RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 EHMT1Q9H9B1 1298 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 C6orf50Q9HD87 102 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 SH3GLB2Q9NR46 395 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 TMEM260Q9NX78 707 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 LIMCH1Q9UPQ0 1083 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 A6NJR5 290 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 ZEB2O60315 1214 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 DTNBO60941 627 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 ELP1O95163 1332 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 TGFB3P10600 412 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 ITGB5P18084 799 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 UBA1P22314 1058 aaKnown RBP10.71□□□□□ -0.69
LDLR-211ENST00000560173 GNA11P29992 359 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 SREBF1P36956 1147 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 CPT1AP50416 773 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 TRIM60Q495X7 471 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 JAKMIP3Q5VZ66 844 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 CXCL17Q6UXB2 119 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 C7orf61Q8IZ16 206 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 NSUN7Q8NE18 718 aaKnown RBP10.71□□□□□ -0.69
LDLR-211ENST00000560173 GLT1D1Q96MS3 346 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 STARD7Q9NQZ5 370 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 NR2E3Q9Y5X4 410 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 UBIAD1Q9Y5Z9 338 aa10.71□□□□□ -0.69
LDLR-211ENST00000560173 SPATA31C2B4DYI2 1134 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 FIBPO43427 364 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 JAK2O60674 1132 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 CABYRO75952 493 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 GGPS1O95749 300 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 MMP3P08254 477 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 NLRP5P59047 1200 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 SP2Q02086 613 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 NPY5RQ15761 445 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 BRDTQ58F21 947 aaPredicted RBP10.7□□□□□ -0.7
LDLR-211ENST00000560173 CELF3Q5SZQ8 465 aaKnown RBP10.7□□□□□ -0.7
LDLR-211ENST00000560173 MCTP2Q6DN12 878 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 NLRX1Q86UT6 975 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 DAGLBQ8NCG7 672 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 BICD2Q8TD16 824 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 RASGRP4Q8TDF6 673 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 AFG1LQ8WV93 481 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 CRYGNQ8WXF5 182 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 GPRASP2Q96D09 838 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 POLR3EQ9NVU0 708 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 RTEL1Q9NZ71 1219 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 ORC3Q9UBD5 711 aaPredicted RBP10.7□□□□□ -0.7
LDLR-211ENST00000560173 ATP11BQ9Y2G3 1177 aa10.7□□□□□ -0.7
LDLR-211ENST00000560173 A0A0U1RQG5 324 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 KPNA6O60684 536 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 MYL3P08590 195 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 HOXD8P13378 290 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 FDPSP14324 419 aaKnown RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 ARHGAP4P98171 946 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 PURAQ00577 322 aaKnown RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 TLE2Q04725 743 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 LAMC2Q13753 1193 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 MYSM1Q5VVJ2 828 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 CCDC83Q8IWF9 413 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 DHX37Q8IY37 1157 aaKnown RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 SLC43A3Q8NBI5 491 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 IL27Q8NEV9 243 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 PPTC7Q8NI37 304 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 WASF1Q92558 559 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 CDHR1Q96JP9 859 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 ZSCAN31Q96LW9 406 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 MTG1Q9BT17 334 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 COL25A1Q9BXS0 654 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 BCAS3Q9H6U6 928 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 JADE2Q9NQC1 790 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 SH2B1Q9NRF2 756 aaPredicted RBP10.69□□□□□ -0.7
LDLR-211ENST00000560173 PCDHA4Q9UN74 947 aa10.69□□□□□ -0.7
LDLR-211ENST00000560173 SCN10AQ9Y5Y9 1956 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 GRIN2DO15399 1336 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 M0R2N6 131 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 ARVCFO00192 962 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 ST18O60284 1047 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 SORBS3O60504 671 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 CYP3A4P08684 503 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 KCNA2P16389 499 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 CDK7P50613 346 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 PSMC6P62333 389 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 MTMR1Q13613 665 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 NEDD9Q14511 834 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 HSDL1Q3SXM5 330 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 CEP55Q53EZ4 464 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 GALNT17Q6IS24 598 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 METTL7BQ6UX53 244 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 ANKRD33Q7Z3H0 272 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 CYP2W1Q8TAV3 490 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 VTI1AQ96AJ9 217 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 SPATA33Q96N06 139 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 TOX2Q96NM4 488 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 SENP7Q9BQF6 1050 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 MXRA8Q9BRK3 442 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 LLPHQ9BRT6 129 aaKnown RBP10.68□□□□□ -0.7
LDLR-211ENST00000560173 ALG1Q9BT22 464 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 PHF20Q9BVI0 1012 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 GJB4Q9NTQ9 266 aa10.68□□□□□ -0.7
LDLR-211ENST00000560173 ZMYND8Q9ULU4 1186 aaPredicted RBP10.68□□□□□ -0.7
LDLR-211ENST00000560173 KCNJ14Q9UNX9 436 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms