RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PIK3C2BO00750 1634 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 TCP10L2B9ZVM9 353 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 ACTN3Q08043 901 aaPredicted RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 TMED1Q13445 227 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.5□□□□□ -0.41
VPS39-201ENST00000318006 NEK9Q8TD19 979 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 HAUS1Q96CS2 278 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 HVCN1Q96D96 273 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 POLR2MP0CAP2 368 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 GGCXP38435 758 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 PLTPP55058 493 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 MRPS9P82933 396 aaKnown RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 ZBED6P86452 979 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 DYNC1I2Q13409 638 aaKnown RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 ST13P4Q8IZP2 240 aaPredicted RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 PBKQ96KB5 322 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 SH3GL3Q99963 347 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 BRD2P25440 801 aaKnown RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 CXCR5P32302 372 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 MAN1A1P33908 653 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 ESRRGP62508 458 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 NR5A1Q13285 461 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 PRKG1Q13976 671 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 ABCB5Q2M3G0 1257 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 GLE1Q53GS7 698 aaKnown RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 CASC4Q6P4E1 433 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 RSAD2Q8WXG1 361 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 DHTKD1Q96HY7 919 aaPredicted RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 IWS1Q96ST2 819 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 CXorf56Q9H5V9 222 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 TMEM232C9JQI7 657 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 FOSP01100 380 aaPredicted RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 CUL1Q13616 776 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 CCDC144BQ3MJ40 725 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 MORC4Q8TE76 937 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 CUEDC2Q9H467 287 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 AZI2Q9H6S1 392 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 YY1AP1Q9H869 796 aa12.5□□□□□ -0.41
VPS39-201ENST00000318006 XAB2Q9HCS7 855 aaKnown RBP12.5□□□□□ -0.41
VPS39-201ENST00000318006 PTPRMP28827 1452 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 RPAP1Q9BWH6 1393 aaPredicted RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 LMNAP02545 664 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 METTL14Q9HCE5 456 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 SRP68Q9UHB9 627 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 KCNG1Q9UIX4 513 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 GIPC1O14908 333 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 MFAP3LO75121 409 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 MOCS3O95396 460 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 SLC7A5Q01650 507 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 FAM26FQ5R3K3 315 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 AMNQ9BXJ7 453 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 SLC39A2Q9NP94 309 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 PANK4Q9NVE7 773 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 USP27XA6NNY8 438 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 PRPF3O43395 683 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 TTLL1O95922 423 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 CAPN12Q6ZSI9 719 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 PARP9Q8IXQ6 854 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 RASGRP4Q8TDF6 673 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 SPDL1Q96EA4 605 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 ZMAT2Q96NC0 199 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 RAB20Q9NX57 234 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 SERPINB13Q9UIV8 391 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 NFU1Q9UMS0 254 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 IVNS1ABPQ9Y6Y0 642 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 TNS3Q68CZ2 1445 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 RASGRF2O14827 1237 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 ECM2O94769 699 aaPredicted RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 ALAS1P13196 640 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 MECOMQ03112 1051 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 GRM1Q13255 1194 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 TOB2Q14106 344 aaPredicted RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 CAPRIN2Q6IMN6 1127 aaKnown RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 TMTC3Q6ZXV5 915 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 AK8Q96MA6 479 aa12.49□□□□□ -0.41
VPS39-201ENST00000318006 NHEJ1Q9H9Q4 299 aaPredicted RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 GPHNQ9NQX3 736 aaPredicted RBP12.49□□□□□ -0.41
VPS39-201ENST00000318006 POLR1AO95602 1720 aaPredicted RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 NRKQ7Z2Y5 1582 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 POC1B-GALNT4F8VUJ3 575 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 SLFN14P0C7P3 912 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 PHEXP78562 749 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 GRAPQ13588 217 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 RCN2Q14257 317 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 ANKRD20A4Q4UJ75 823 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 ANKRD20A8PQ5CZ79 823 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 ANKRD20A2Q5SQ80 823 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 ANKRD20A1Q5TYW2 823 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 GRAPLQ8TC17 118 aaPredicted RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 ELAC2Q9BQ52 826 aaKnown RBP12.48□□□□□ -0.41
VPS39-201ENST00000318006 AS3MTQ9HBK9 375 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 CDHR2Q9BYE9 1310 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 CYP2D7A0A087X1C5 515 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 USP17L8P0C7I0 530 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 TOGARAM2Q6ZUX3 1019 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 OTUD6AQ7L8S5 288 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 KSR1Q8IVT5 923 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 CDAN1Q8IWY9 1227 aa12.48□□□□□ -0.41
VPS39-201ENST00000318006 RDH13Q8NBN7 331 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms