RNA–Protein interactions for RNA: ENST00000636977.1

CLN3-253, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,969 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-253ENST00000636977 RETREG2Q8NC44 543 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 CDK5RAP3Q96JB5 506 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 PURBQ96QR8 312 aaKnown RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 TRIM66O15016 1216 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 MOCS3O95396 460 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 EIF4A3P38919 411 aaKnown RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 CACNB1Q02641 598 aaPredicted RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 EZH2Q15910 746 aaKnown RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 SHROOM1Q2M3G4 852 aaPredicted RBP16.55■□□□□ 0.24
CLN3-253ENST00000636977 WDR93Q6P2C0 686 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 CCDC170Q8IYT3 715 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 COG1Q8WTW3 980 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 RAD54LQ92698 747 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 JMJD4Q9H9V9 463 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 EHD2Q9NZN4 543 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 SALL4Q9UJQ4 1053 aa16.55■□□□□ 0.24
CLN3-253ENST00000636977 LRRC53A6NM62 1247 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 ATP2B4P23634 1241 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 FXR2P51116 673 aaKnown RBP eCLIP16.54■□□□□ 0.24
CLN3-253ENST00000636977 VAV2P52735 878 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 RRAGAQ7L523 313 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 ADGRF4Q8IZF3 695 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 RIN2Q8WYP3 895 aaPredicted RBP16.54■□□□□ 0.24
CLN3-253ENST00000636977 HAS1Q92839 578 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 GAKO14976 1311 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 ESYT2A0FGR8 921 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 IPO7O95373 1038 aaKnown RBP16.54■□□□□ 0.24
CLN3-253ENST00000636977 SERPINB2P05120 415 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 CXCR5P32302 372 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 NT5C2P49902 561 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 CRY2Q49AN0 593 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 LRRC55Q6ZSA7 311 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 KCTD1Q719H9 257 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 CAGE1Q8TC20 777 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 KCNG1Q9UIX4 513 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 PLAGL2Q9UPG8 496 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 PCDHA13Q9Y5I0 950 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 TAF1LQ8IZX4 1826 aa16.54■□□□□ 0.24
CLN3-253ENST00000636977 GYS1P13807 737 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 SCNN1DP51172 638 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 KIF5AQ12840 1032 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 CERS5Q8N5B7 392 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 HDAC7Q8WUI4 952 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 IFIH1Q9BYX4 1025 aaKnown RBP16.53■□□□□ 0.24
CLN3-253ENST00000636977 MYH10P35580 1976 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 NPHP3-ACAD11A0A0J9YXS1 232 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 A0A1W2PQJ5 194 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 PLCG2P16885 1265 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 KIF11P52732 1056 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 GABPAQ06546 454 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 ZNF662Q6ZS27 426 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 TXLNBQ8N3L3 684 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 EXOC4Q96A65 974 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 FAM163AQ96GL9 167 aaPredicted RBP16.53■□□□□ 0.24
CLN3-253ENST00000636977 USP17L10C9JJH3 530 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 NCK2O43639 380 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 SSBP05455 408 aaKnown RBP eCLIP16.53■□□□□ 0.24
CLN3-253ENST00000636977 SMARCA1P28370 1054 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 SEMA3FQ13275 785 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 RASSF4Q9H2L5 321 aa16.53■□□□□ 0.24
CLN3-253ENST00000636977 TUBB4BP68371 445 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 SPA17Q15506 151 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 ZSCAN26Q16670 478 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 FIGNQ5HY92 759 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 TMC4Q7Z404 712 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 STK17AQ9UEE5 414 aa16.52■□□□□ 0.24
CLN3-253ENST00000636977 GFPT1Q06210 699 aaPredicted RBP16.52■□□□□ 0.23
CLN3-253ENST00000636977 KCNMA1Q12791 1236 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 TMEM266Q2M3C6 531 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 COBLL1Q53SF7 1204 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 KRT79Q5XKE5 535 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 CREG2Q8IUH2 290 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 GUF1Q8N442 669 aaKnown RBP16.52■□□□□ 0.23
CLN3-253ENST00000636977 BAP1Q92560 729 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 NLRC4Q9NPP4 1024 aa16.52■□□□□ 0.23
CLN3-253ENST00000636977 LTBP4Q8N2S1 1624 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 IGKV6D-41A0A0C4DH26 115 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 PVALEFA0A1B0GWK0 134 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 FAM196BA6NMK8 535 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 E9PMD0 336 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 RAD21O60216 631 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 EIF3JO75822 258 aaKnown RBP16.51■□□□□ 0.23
CLN3-253ENST00000636977 SNHG28P0DPA3 235 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 MATR3P43243 847 aaKnown RBP eCLIP16.51■□□□□ 0.23
CLN3-253ENST00000636977 EHHADHQ08426 723 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 ZNF543Q08ER8 600 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 GPS2Q13227 327 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 MAN2A1Q16706 1144 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 NFRKBQ6P4R8 1299 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 CERKQ8TCT0 537 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 DNAJC19Q96DA6 116 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 TANGO6Q9C0B7 1094 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 SH2D4AQ9H788 454 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 DDX25Q9UHL0 483 aaKnown RBP16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP21Q9UK80 565 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L15C9J2P7 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L13C9JLJ4 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L11C9JVI0 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L18D6R9N7 530 aa16.51■□□□□ 0.23
CLN3-253ENST00000636977 USP17L22D6RA61 530 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms