RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 PPTC7Q8NI37 304 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 AFG1LQ8WV93 481 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 TBC1D5Q92609 795 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 COPS5Q92905 334 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 VWCEQ96DN2 955 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 SCLYQ96I15 445 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 MAP3K14Q99558 947 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 RIOX1Q9H6W3 641 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 COL20A1Q9P218 1284 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 MAD2L2Q9UI95 211 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 PCDHA1Q9Y5I3 950 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 MUC3AQ02505 3323 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 ZBBXA8MT70 800 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 KIF28PB7ZC32 967 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 PPFIA4O75335 1185 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 STAM2O75886 525 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 CFBP00751 764 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 GSPT1P15170 499 aaKnown RBP15.81■□□□□ 0.12
TRIM28-211ENST00000597968 PTGISQ16647 500 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 LY6KQ17RY6 165 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 TMEM67Q5HYA8 995 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 RALYLQ86SE5 291 aaKnown RBP15.81■□□□□ 0.12
TRIM28-211ENST00000597968 NCOA7Q8NI08 942 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 PRDM12Q9H4Q4 367 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 VAT1LQ9HCJ6 419 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 MRVI1Q9Y6F6 885 aa15.81■□□□□ 0.12
TRIM28-211ENST00000597968 EFCAB14O75071 495 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 F2P00734 622 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 CYP21A2P08686 494 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 POU3F3P20264 500 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-211ENST00000597968 CHMLP26374 656 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 SMARCA1P28370 1054 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 GRM4Q14833 912 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 PPP2R2DQ66LE6 453 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 VSIG10LQ86VR7 867 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 STAG2Q8N3U4 1231 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 PDCD2LQ9BRP1 358 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 TSPYL2Q9H2G4 693 aaPredicted RBP15.8■□□□□ 0.12
TRIM28-211ENST00000597968 NKX2-4Q9H2Z4 354 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 GTF2IRD1Q9UHL9 959 aa15.8■□□□□ 0.12
TRIM28-211ENST00000597968 YBX2Q9Y2T7 364 aaKnown RBP15.8■□□□□ 0.12
TRIM28-211ENST00000597968 CHD7Q9P2D1 2997 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 PNMA6FA0A0J9YX94 578 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 GCOM1H8Y6P7 765 aaPredicted RBP15.79■□□□□ 0.12
TRIM28-211ENST00000597968 OPLAHO14841 1288 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 IFIT3O14879 490 aaKnown RBP15.79■□□□□ 0.12
TRIM28-211ENST00000597968 POLR2MP0CAP2 368 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 EIF2AK2P19525 551 aaKnown RBP15.79■□□□□ 0.12
TRIM28-211ENST00000597968 PDE4AP27815 886 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 TROAPQ12815 778 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 CYB5R4Q7L1T6 521 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 DHX37Q8IY37 1157 aaKnown RBP15.79■□□□□ 0.12
TRIM28-211ENST00000597968 C7orf31Q8N865 590 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 KAT2BQ92831 832 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 IL25Q9H293 177 aa15.79■□□□□ 0.12
TRIM28-211ENST00000597968 HAS3O00219 553 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 SGSM2O43147 1006 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 SELPP16109 830 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 PTK7Q13308 1070 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 WTAPQ15007 396 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 PGM5Q15124 567 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 GNPTABQ3T906 1256 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 MYSM1Q5VVJ2 828 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 DEFB128Q7Z7B8 93 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 CATIPQ7Z7H3 387 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 TMTC2Q8N394 836 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 MAP4K1Q92918 833 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 THEGQ9P2T0 379 aa15.78■□□□□ 0.12
TRIM28-211ENST00000597968 E7EWF7 191 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 CXCL10P02778 98 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 CCND2P30279 289 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 PSEN2P49810 448 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 ADGRE1Q14246 886 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 CELF3Q5SZQ8 465 aaKnown RBP15.77■□□□□ 0.12
TRIM28-211ENST00000597968 GDF6Q6KF10 455 aaPredicted RBP15.77■□□□□ 0.12
TRIM28-211ENST00000597968 USP38Q8NB14 1042 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 LZTS2Q9BRK4 669 aa15.77■□□□□ 0.12
TRIM28-211ENST00000597968 FTOQ9C0B1 505 aaKnown RBP eCLIP15.77■□□□□ 0.12
TRIM28-211ENST00000597968 KIAA1217Q5T5P2 1943 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 TANC1Q9C0D5 1861 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 FRMPD4Q14CM0 1322 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 ABHD14A-ACY1A0A1B0GW23 586 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 PPP1R11O60927 126 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-211ENST00000597968 RGS20O76081 388 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 KIF5BP33176 963 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 KCNJ6P48051 423 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 MRPS5P82675 430 aaKnown RBP15.76■□□□□ 0.11
TRIM28-211ENST00000597968 MFSD10Q14728 455 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 XRRA1Q6P2D8 792 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 CNKSR3Q6P9H4 555 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 LRRC8DQ7L1W4 858 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 CHST3Q7LGC8 479 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 HERC6Q8IVU3 1022 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 CTAGE1Q96RT6 745 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 SPZ1Q9BXG8 430 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 XIRP2A4UGR9 3374 aa15.76■□□□□ 0.11
TRIM28-211ENST00000597968 EMSYQ7Z589 1322 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 GTPBP6O43824 516 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-211ENST00000597968 CAND2O75155 1236 aa15.75■□□□□ 0.11
TRIM28-211ENST00000597968 DDAH1O94760 285 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 86.6 ms