RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 EPHB4P54760 987 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 ZNF445P59923 1031 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 ABHD18Q0P651 414 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 R3HDM1Q15032 1099 aaKnown RBP3.54□□□□□ -1.84
SPG11-223ENST00000560858 SLFN13Q68D06 897 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 WWC2Q6AWC2 1192 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 STK32CQ86UX6 486 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 SLC9A7Q96T83 725 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 TMEM168Q9H0V1 697 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 L2HGDHQ9H9P8 463 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 NGRNQ9NPE2 291 aaKnown RBP3.54□□□□□ -1.84
SPG11-223ENST00000560858 FHOD1Q9Y613 1164 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 KDM5BQ9UGL1 1544 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 GRIN2BQ13224 1484 aa3.54□□□□□ -1.84
SPG11-223ENST00000560858 SETD5Q9C0A6 1442 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 CARMIL1Q5VZK9 1371 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 TARBP1Q13395 1621 aaKnown RBP3.53□□□□□ -1.84
SPG11-223ENST00000560858 C9IYK1 514 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 GREM1O60565 184 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 CYP7B1O75881 506 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 IFNGR1P15260 489 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 EIF4A3P38919 411 aaKnown RBP3.53□□□□□ -1.84
SPG11-223ENST00000560858 DPTQ07507 201 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 FOXE3Q13461 319 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 PRR31Q5SQ13 230 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 RCSD1Q6JBY9 416 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 TMC4Q7Z404 712 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 WWC2-AS2Q96NR7 200 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 AP5M1Q9H0R1 490 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 GP6Q9HCN6 339 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.53□□□□□ -1.84
SPG11-223ENST00000560858 DIS3Q9Y2L1 958 aaKnown RBP3.53□□□□□ -1.84
SPG11-223ENST00000560858 ADAMTS12P58397 1594 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 UGGT2Q9NYU1 1516 aa3.53□□□□□ -1.84
SPG11-223ENST00000560858 FGD6Q6ZV73 1430 aa3.53□□□□□ -1.85
SPG11-223ENST00000560858 AKNAQ7Z591 1439 aa3.53□□□□□ -1.85
SPG11-223ENST00000560858 A0A087WZG4 1122 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 MEIS3P2A8K0S8 358 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 B4GALT4O60513 344 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 NTRK1P04629 796 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 ITGA4P13612 1032 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 CD247P20963 164 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 ITGAEP38570 1179 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 SEPHS1P49903 392 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 PMS1P54277 932 aaKnown RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 ITGA1P56199 1179 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 CLCQ05315 142 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 PRKD1Q15139 912 aaPredicted RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 TCEAL1Q15170 157 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 SEZ6Q53EL9 994 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 DCP2Q8IU60 420 aaKnown RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 KBTBD2Q8IY47 623 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 Q8TCH9 128 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 ZNF296Q8WUU4 475 aaPredicted RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 SYT3Q9BQG1 590 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 MTA3Q9BTC8 594 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 CSRNP2Q9H175 543 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 NOL6Q9H6R4 1146 aaKnown RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 KCNQ5Q9NR82 932 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 KBTBD4Q9NVX7 518 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 GULP1Q9UBP9 304 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 FBLN5Q9UBX5 448 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 URB2Q14146 1524 aaKnown RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 TCOF1Q13428 1488 aaKnown RBP3.52□□□□□ -1.85
SPG11-223ENST00000560858 CROCC2H7BZ55 1655 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 HFM1A2PYH4 1435 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 FHOD3Q2V2M9 1422 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 FMN1Q68DA7 1419 aa3.52□□□□□ -1.85
SPG11-223ENST00000560858 WDR62O43379 1518 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 TRBV23OR9-2A0A075B6M9 112 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 FAM86C2PA6NEL3 165 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 SORBS3O60504 671 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 PPP1R11O60927 126 aaPredicted RBP3.51□□□□□ -1.85
SPG11-223ENST00000560858 MCM7P33993 719 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 IL13P35225 146 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 NANOS3P60323 173 aaKnown RBP3.51□□□□□ -1.85
SPG11-223ENST00000560858 MIIPQ5JXC2 388 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 DCAF15Q66K64 600 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 MIB1Q86YT6 1006 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 DNAJC10Q8IXB1 793 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 FAM26EQ8N5C1 309 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 AMER2Q8N7J2 671 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 RNF34Q969K3 372 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 ZDHHC15Q96MV8 337 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 IKZF4Q9H2S9 585 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 MRS2Q9HD23 443 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 SIT1Q9Y3P8 196 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 IVNS1ABPQ9Y6Y0 642 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 CCDC18Q5T9S5 1454 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 ADGBQ8N7X0 1667 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 NESP48681 1621 aa3.51□□□□□ -1.85
SPG11-223ENST00000560858 MAGI3Q5TCQ9 1506 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 RAD54L2Q9Y4B4 1467 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 NPHP3-ACAD11A0A0J9YXS1 232 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 NPHS1O60500 1241 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 ZNF202O95125 648 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 FUCA1P04066 466 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 TP53P04637 393 aaPredicted RBP3.5□□□□□ -1.85
SPG11-223ENST00000560858 ZNF28P17035 718 aa3.5□□□□□ -1.85
SPG11-223ENST00000560858 NKX3-2P78367 333 aa3.5□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms