RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 VSIG10LQ86VR7 867 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 SMARCC2Q8TAQ2 1214 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 SLC26A6Q9BXS9 759 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 RIC8AQ9NPQ8 531 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 Q9Y3F1 56 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 DNAH12Q6ZR08 3092 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 ESYT2A0FGR8 921 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 SOX1O00570 391 aaPredicted RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 CPLX1O14810 134 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 RGS20O76081 388 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 ARIH2O95376 493 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 LARGE1O95461 756 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 C6orf222P0C671 652 aaPredicted RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 MYCLP12524 364 aaPredicted RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 CCND2P30279 289 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 ANP32AP39687 249 aaKnown RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 AKAP17AQ02040 695 aaKnown RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 TTLL4Q14679 1199 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 CCDC62Q6P9F0 684 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 CPLX2Q6PUV4 134 aaKnown RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 TRIM22Q8IYM9 498 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 TSEN34Q9BSV6 310 aaKnown RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 SENP6Q9GZR1 1112 aaPredicted RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 AP5M1Q9H0R1 490 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 GLT8D2Q9H1C3 349 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 SLKQ9H2G2 1235 aaPredicted RBP10.75□□□□□ -0.69
LDLR-211ENST00000560173 SPC25Q9HBM1 224 aa10.75□□□□□ -0.69
LDLR-211ENST00000560173 ALPK3Q96L96 1907 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 SMCO2A6NFE2 343 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 MOXD2PA6NHM9 499 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 SPDYE3A6NKU9 549 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 NKRFO15226 690 aaKnown RBP eCLIP10.74□□□□□ -0.69
LDLR-211ENST00000560173 DYNC1LI2O43237 492 aaPredicted RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 CDKL5O76039 1030 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 TXNP10599 105 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 ACLYP53396 1101 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 MRPS9P82933 396 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 BEX3Q00994 111 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 SSRP1Q08945 709 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 KCNA10Q16322 511 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 FSCN1Q16658 493 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 ME3Q16798 604 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 LRRC26Q2I0M4 334 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 GNASQ5JWF2 1037 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 XRRA1Q6P2D8 792 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 SEPT14Q6ZU15 432 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 PCSK9Q8NBP7 692 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 CCDC12Q8WUD4 166 aaPredicted RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 COPS5Q92905 334 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 GTF3C6Q969F1 213 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 FERMT2Q96AC1 680 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 LRCH3Q96II8 777 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 ZMYND12Q9H0C1 365 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 UPF2Q9HAU5 1272 aaKnown RBP10.74□□□□□ -0.69
LDLR-211ENST00000560173 STK36Q9NRP7 1315 aa10.74□□□□□ -0.69
LDLR-211ENST00000560173 A0A1W2PPC1 479 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 A0A1W2PQ45 241 aaPredicted RBP10.73□□□□□ -0.69
LDLR-211ENST00000560173 A0A1W2PQY0 241 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 STAM2O75886 525 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 DEXIO95424 95 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 CTDNEP1O95476 244 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 CLK2P49760 499 aaKnown RBP10.73□□□□□ -0.69
LDLR-211ENST00000560173 ARHGAP1Q07960 439 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 AP3B2Q13367 1082 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 SNX17Q15036 470 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 RABEP1Q15276 862 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 PCNX4Q63HM2 1172 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 NECAB1Q8N987 351 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 CCDC148Q8NFR7 591 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 OR6J1Q8NGC5 347 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 ZFP91Q96JP5 570 aaPredicted RBP10.73□□□□□ -0.69
LDLR-211ENST00000560173 TBC1D32Q96NH3 1257 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 INPP4AQ96PE3 977 aaPredicted RBP10.73□□□□□ -0.69
LDLR-211ENST00000560173 VPS54Q9P1Q0 977 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 DDX41Q9UJV9 622 aaKnown RBP10.73□□□□□ -0.69
LDLR-211ENST00000560173 PCDHA6Q9UN73 950 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 PCDHA8Q9Y5H6 950 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 MRVI1Q9Y6F6 885 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 KIAA1217Q5T5P2 1943 aa10.73□□□□□ -0.69
LDLR-211ENST00000560173 ADAMTS3O15072 1205 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 EVI5O60447 810 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 FOSP01100 380 aaPredicted RBP10.72□□□□□ -0.69
LDLR-211ENST00000560173 GH1P01241 217 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 ASGR1P07306 291 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 ICAM3P32942 547 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 ATN1P54259 1190 aaPredicted RBP10.72□□□□□ -0.69
LDLR-211ENST00000560173 RTP1P59025 263 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 ST3GAL1Q11201 340 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 SEMA3FQ13275 785 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 LY6KQ17RY6 165 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 GNPTABQ3T906 1256 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 C1orf53Q5VUE5 145 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 KCNV1Q6PIU1 500 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 SLC39A5Q6ZMH5 540 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 FAM177A1Q8N128 213 aaPredicted RBP10.72□□□□□ -0.69
LDLR-211ENST00000560173 REXO1Q8N1G1 1221 aaKnown RBP10.72□□□□□ -0.69
LDLR-211ENST00000560173 EMID1Q96A84 441 aaPredicted RBP10.72□□□□□ -0.69
LDLR-211ENST00000560173 PGBD1Q96JS3 809 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 AIFM3Q96NN9 605 aa10.72□□□□□ -0.69
LDLR-211ENST00000560173 ANO3Q9BYT9 981 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 113 ms