RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SEC23AQ15436 765 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 MSL1Q68DK7 614 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 SEC16BQ96JE7 1060 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 CARD10Q9BWT7 1032 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 ADAMTS1Q9UHI8 967 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 RIC1Q4ADV7 1423 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 TMCO5BA8MYB1 307 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 CEP104O60308 925 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 KLRC1P26715 233 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 HSD17B3P37058 310 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 TECP42680 631 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 CTSWP56202 376 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 FUT2Q10981 343 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 LETM2Q2VYF4 491 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 HEATR3Q7Z4Q2 680 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 TBC1D1Q86TI0 1168 aaPredicted RBP15.84■□□□□ 0.13
SDC1-201ENST00000254351 KSR1Q8IVT5 923 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 CAVIN3Q969G5 261 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 ISCA1Q9BUE6 129 aa15.84■□□□□ 0.13
SDC1-201ENST00000254351 RNF41Q9H4P4 317 aaPredicted RBP15.84■□□□□ 0.13
SDC1-201ENST00000254351 GOLGB1Q14789 3259 aaKnown RBP15.84■□□□□ 0.13
SDC1-201ENST00000254351 SCG2P13521 617 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 SCTRP47872 440 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 TBC1D5Q92609 795 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 TNFRSF25Q93038 417 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 STAMBPL1Q96FJ0 436 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 NUP58Q9BVL2 599 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 CCDC113Q9H0I3 377 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 NDST4Q9H3R1 872 aa15.83■□□□□ 0.13
SDC1-201ENST00000254351 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.83■□□□□ 0.13
SDC1-201ENST00000254351 BUB1BO60566 1050 aaPredicted RBP15.83■□□□□ 0.12
SDC1-201ENST00000254351 BMP15O95972 392 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 TROAPQ12815 778 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 NEUROG2Q9H2A3 272 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 PLAGL2Q9UPG8 496 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 USP17L12C9JPN9 530 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 USP17L21D6R901 530 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 KIF1CO43896 1103 aaKnown RBP15.83■□□□□ 0.12
SDC1-201ENST00000254351 GOLGA8HP0CJ92 632 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 IFNAR2P48551 515 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 PUM3Q15397 648 aaKnown RBP15.83■□□□□ 0.12
SDC1-201ENST00000254351 TXNRD1Q16881 649 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 KIAA0753Q2KHM9 967 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 KRT71Q3SY84 523 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 ANKRD20A8PQ5CZ79 823 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 DZIP3Q86Y13 1208 aaKnown RBP15.83■□□□□ 0.12
SDC1-201ENST00000254351 CACNA2D3Q8IZS8 1091 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 GIMAP8Q8ND71 665 aaPredicted RBP15.83■□□□□ 0.12
SDC1-201ENST00000254351 SELENOSQ9BQE4 189 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 ABCC12Q96J65 1359 aa15.83■□□□□ 0.12
SDC1-201ENST00000254351 CCDC189A1A4V9 331 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 CYP2D6P10635 497 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 COPB2P35606 906 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 ERVK-9P63128 1117 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 IFFO1Q0D2I5 559 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 RAPGEF1Q13905 1077 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 STAG2Q8N3U4 1231 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 MARCH10Q8NA82 808 aaPredicted RBP15.82■□□□□ 0.12
SDC1-201ENST00000254351 RAPGEF5Q92565 580 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 HVCN1Q96D96 273 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 CELF4Q9BZC1 486 aaKnown RBP15.82■□□□□ 0.12
SDC1-201ENST00000254351 SEMA6BQ9H3T3 888 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 FBXL5Q9UKA1 691 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 ASAP1Q9ULH1 1129 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 ADAMTS2O95450 1211 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 POLR2FP61218 127 aaKnown RBP15.82■□□□□ 0.12
SDC1-201ENST00000254351 TMTC3Q6ZXV5 915 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 VAT1LQ9HCJ6 419 aa15.82■□□□□ 0.12
SDC1-201ENST00000254351 UQCRFS1P1P0C7P4 283 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 GCFC2P16383 781 aaKnown RBP15.81■□□□□ 0.12
SDC1-201ENST00000254351 GYG1P46976 350 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 MKRN4PQ13434 485 aaPredicted RBP15.81■□□□□ 0.12
SDC1-201ENST00000254351 ECM29Q5VYK3 1845 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 VGLL2Q8N8G2 317 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 AMACRQ9UHK6 382 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 MAGEB6P1A0A0J9YX57 407 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 DAPK3O43293 454 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 CSF1RP07333 972 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 CCNE1P24864 410 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 ALX1Q15699 326 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 VWA3BQ502W6 1294 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 SGSM3Q96HU1 749 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 GDF3Q9NR23 364 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 CD2APQ9Y5K6 639 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 ENO4A6NNW6 628 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 SLC5A1P13866 664 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 GCKP35557 465 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 CABP7Q86V35 215 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 BLIDQ8IZY5 108 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 FAXDC2Q96IV6 333 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 ATP8A1Q9Y2Q0 1164 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 ARFGEF2Q9Y6D5 1785 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 PKD1L3Q7Z443 1732 aa15.81■□□□□ 0.12
SDC1-201ENST00000254351 RTL9Q8NET4 1388 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 CCNT1O60563 726 aaKnown RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 CCNHP51946 323 aaPredicted RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 ZNF844Q08AG5 666 aa15.8■□□□□ 0.12
SDC1-201ENST00000254351 PRPF4BQ13523 1007 aaKnown RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 UAP1Q16222 522 aaPredicted RBP15.8■□□□□ 0.12
SDC1-201ENST00000254351 FAM133AQ8N9E0 248 aa15.8■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms