RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 SUPT16HQ9Y5B9 1047 aaKnown RBP15.9■□□□□ 0.14
TRIM28-211ENST00000597968 TNKSO95271 1327 aa15.9■□□□□ 0.14
TRIM28-211ENST00000597968 LAMA4Q16363 1823 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 B4E1Z4 1266 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 TXNP10599 105 aaKnown RBP15.89■□□□□ 0.13
TRIM28-211ENST00000597968 GRIN2CQ14957 1233 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 STXBP2Q15833 593 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 ADGRF4Q8IZF3 695 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 GAS2L1Q99501 681 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-211ENST00000597968 ZKSCAN3Q9BRR0 538 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 COL25A1Q9BXS0 654 aaPredicted RBP15.89■□□□□ 0.13
TRIM28-211ENST00000597968 TRPV6Q9H1D0 765 aa15.89■□□□□ 0.13
TRIM28-211ENST00000597968 PARNO95453 639 aaKnown RBP15.88■□□□□ 0.13
TRIM28-211ENST00000597968 MYL3P08590 195 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 GOLGA8HP0CJ92 632 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 ACRP10323 421 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 PSMC6P62333 389 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 TRDNQ13061 729 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 USH1GQ495M9 461 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 TMEM63BQ5T3F8 832 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 IFIT1BQ5T764 474 aaKnown RBP15.88■□□□□ 0.13
TRIM28-211ENST00000597968 CCDC62Q6P9F0 684 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 SESTD1Q86VW0 696 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 FBXO11Q86XK2 927 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 RUFY2Q8WXA3 655 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 EMID1Q96A84 441 aaPredicted RBP15.88■□□□□ 0.13
TRIM28-211ENST00000597968 UBA5Q9GZZ9 404 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 WNT8AQ9H1J5 351 aa15.88■□□□□ 0.13
TRIM28-211ENST00000597968 ACTN1P12814 892 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 BFSP2Q13515 415 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 KCNV1Q6PIU1 500 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 CCDC155Q8N6L0 562 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 SYTL5Q8TDW5 730 aaPredicted RBP15.87■□□□□ 0.13
TRIM28-211ENST00000597968 RMDN3Q96TC7 470 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 AMNQ9BXJ7 453 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 SLC28A3Q9HAS3 691 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 SLC4A7Q9Y6M7 1214 aa15.87■□□□□ 0.13
TRIM28-211ENST00000597968 DDX49Q9Y6V7 483 aaKnown RBP15.87■□□□□ 0.13
TRIM28-211ENST00000597968 EIF3JO75822 258 aaKnown RBP15.86■□□□□ 0.13
TRIM28-211ENST00000597968 GH1P01241 217 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 CASTP20810 708 aaKnown RBP15.86■□□□□ 0.13
TRIM28-211ENST00000597968 CCL23P55773 120 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 IRX6P78412 446 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-211ENST00000597968 QRICH1Q2TAL8 776 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 NBPF20Q3BBV1 942 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 CAGE1Q8TC20 777 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 PHOSPHO2Q8TCD6 241 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 MTMR8Q96EF0 704 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 JMJD4Q9H9V9 463 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 PCDHA11Q9Y5I1 949 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 U3KPZ7 1027 aaPredicted RBP15.86■□□□□ 0.13
TRIM28-211ENST00000597968 UMODL1Q5DID0 1318 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 SCN10AQ9Y5Y9 1956 aa15.86■□□□□ 0.13
TRIM28-211ENST00000597968 ZBTB5O15062 677 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 DHX16O60231 1041 aaKnown RBP15.85■□□□□ 0.13
TRIM28-211ENST00000597968 HSD17B4P51659 736 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 SEC23AQ15436 765 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 TTC22Q5TAA0 569 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 OTOP2Q7RTS6 562 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 RETREG2Q8NC44 543 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 KATNAL1Q9BW62 490 aa15.85■□□□□ 0.13
TRIM28-211ENST00000597968 TRMT13Q9NUP7 481 aaKnown RBP15.85■□□□□ 0.13
TRIM28-211ENST00000597968 CXXC1Q9P0U4 656 aaPredicted RBP15.85■□□□□ 0.13
TRIM28-211ENST00000597968 SPTBN5Q9NRC6 3674 aaKnown RBP15.84■□□□□ 0.13
TRIM28-211ENST00000597968 ERICH2A1L162 156 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 BAIAP3O94812 1187 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 TGFB3P10600 412 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 PTGS1P23219 599 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 PBX2P40425 430 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 RBL2Q08999 1139 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 LAMC2Q13753 1193 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 SART3Q15020 963 aaKnown RBP15.84■□□□□ 0.13
TRIM28-211ENST00000597968 DGKDQ16760 1214 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 FAM47CQ5HY64 1035 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 ARHGEF16Q5VV41 709 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 STOX1Q6ZVD7 989 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 AFAP1L1Q8TED9 768 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 TAAR1Q96RJ0 339 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 SLC9A7Q96T83 725 aa15.84■□□□□ 0.13
TRIM28-211ENST00000597968 CHD9Q3L8U1 2897 aa15.83■□□□□ 0.13
TRIM28-211ENST00000597968 CUL9Q8IWT3 2517 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 PALM3A6NDB9 673 aaPredicted RBP15.83■□□□□ 0.12
TRIM28-211ENST00000597968 GRXCR1A8MXD5 290 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 KLRF2D3W0D1 207 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 ARIH2O95376 493 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 NR3C2P08235 984 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 MMP3P08254 477 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 IQCF3P0C7M6 154 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 ARHGAP1Q07960 439 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 ATXN2LQ8WWM7 1075 aaKnown RBP15.83■□□□□ 0.12
TRIM28-211ENST00000597968 MTA3Q9BTC8 594 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 CPVLQ9H3G5 476 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 PXMP2Q9NR77 195 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 DDX41Q9UJV9 622 aaKnown RBP15.83■□□□□ 0.12
TRIM28-211ENST00000597968 NOD1Q9Y239 953 aa15.83■□□□□ 0.12
TRIM28-211ENST00000597968 CYP2C9P11712 490 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 HOXD8P13378 290 aaPredicted RBP15.82■□□□□ 0.12
TRIM28-211ENST00000597968 ATP2A2P16615 1042 aaKnown RBP15.82■□□□□ 0.12
TRIM28-211ENST00000597968 TJAP1Q5JTD0 557 aa15.82■□□□□ 0.12
TRIM28-211ENST00000597968 SEPT14Q6ZU15 432 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms