RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-223	ENST00000560858	RBM10	P98175	930 aa	Known RBP	3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	PSMD2	Q13200	908 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	LRRFIP1	Q32MZ4	808 aa	Known RBP	3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	ZNF575	Q86XF7	245 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	PALM2	Q8IXS6	379 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	C7orf61	Q8IZ16	206 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	LZTR1	Q8N653	840 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	TXNDC5	Q8NBS9	432 aa	Known RBP	3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	NETO2	Q8NC67	525 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	EHMT1	Q9H9B1	1298 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	RXFP1	Q9HBX9	757 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	CD248	Q9HCU0	757 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	BRMS1	Q9HCU9	246 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	JADE2	Q9NQC1	790 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	TESMIN	Q9Y4I5	508 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	LTBP3	Q9NS15	1303 aa		3.59	□□□□□ -1.83
SPG11-223	ENST00000560858	ABCA10	Q8WWZ4	1543 aa		3.59	□□□□□ -1.84
SPG11-223	ENST00000560858	GCC2	Q8IWJ2	1684 aa		3.59	□□□□□ -1.84
SPG11-223	ENST00000560858	C9orf118	A6NHY6	69 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	DDX3X	O00571	662 aa	Known RBP eCLIP	3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	CCDC144CP	Q8IYA2	1237 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	DNER	Q8NFT8	737 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	USP33	Q8TEY7	942 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	FCRL3	Q96P31	734 aa	Predicted RBP	3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	GORASP1	Q9BQQ3	440 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	SF3B6	Q9Y3B4	125 aa	Known RBP	3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	GTF3C3	Q9Y5Q9	886 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	CCNB3	Q8WWL7	1395 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	LRRC9	Q6ZRR7	1453 aa		3.58	□□□□□ -1.84
SPG11-223	ENST00000560858	FHAD1	B1AJZ9	1412 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858		H0Y8X5	98 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	MUSK	O15146	869 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	POLR1A	O95602	1720 aa	Predicted RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	CYP1A1	P04798	512 aa	Predicted RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	NME1	P15531	152 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	POU4F1	Q01851	419 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	EAPP	Q56P03	285 aa	Predicted RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	SNAPC4	Q5SXM2	1469 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	TTBK1	Q5TCY1	1321 aa	Predicted RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	C9orf131	Q5VYM1	1079 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	HECW1	Q76N89	1606 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	ZC3H18	Q86VM9	953 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	RNF19A	Q9NV58	838 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	SUCO	Q9UBS9	1254 aa	Known RBP	3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	PARP2	Q9UGN5	583 aa		3.57	□□□□□ -1.84
SPG11-223	ENST00000560858	PBRM1	Q86U86	1689 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	LAMC3	Q9Y6N6	1575 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	TOPBP1	Q92547	1522 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	NPIPB8	E9PQR5	432 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	GPR42	O15529	346 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	B4GALT3	O60512	393 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	SELENOP	P49908	381 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	PPP2CB	P62714	309 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	PPP2CA	P67775	309 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	DAB2	P98082	770 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	XPC	Q01831	940 aa	Predicted RBP	3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	ANKRD39	Q53RE8	183 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	CD300LD	Q6UXZ3	194 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	ETV3L	Q6ZN32	361 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	ARHGEF18	Q6ZSZ5	1173 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	REXO1	Q8N1G1	1221 aa	Known RBP	3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	IGDCC4	Q8TDY8	1250 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	LRRC3	Q9BY71	257 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	RWDD3	Q9Y3V2	267 aa		3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	SUPT16H	Q9Y5B9	1047 aa	Known RBP	3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	SUPT6H	Q7KZ85	1726 aa	Known RBP	3.56	□□□□□ -1.84
SPG11-223	ENST00000560858	PTPN23	Q9H3S7	1636 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	ARHGEF11	O15085	1522 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	EHBP1L1	Q8N3D4	1523 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	POLA1	P09884	1462 aa	Predicted RBP	3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	FANCD2	Q9BXW9	1451 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	CADPS	Q9ULU8	1353 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	TNFRSF10C	O14798	259 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	ZNF623	O75123	536 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	PPFIA2	O75334	1257 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	C8B	P07358	591 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	CTSH	P09668	335 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	GART	P22102	1010 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	MCM4	P33991	863 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	HS1BP3	Q53T59	392 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	SPDYA	Q5MJ70	313 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	PRAMEF18	Q5VWM3	479 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	EEF1DP3	Q658K8	133 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	INTS3	Q68E01	1043 aa	Known RBP	3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	FBXL19	Q6PCT2	694 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	GK5	Q6ZS86	529 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	FIBCD1	Q8N539	461 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	SMARCC1	Q92922	1105 aa	Predicted RBP	3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	BRF1	Q92994	677 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	CHFR	Q96EP1	664 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	CEP89	Q96ST8	783 aa		3.55	□□□□□ -1.84
SPG11-223	ENST00000560858	CASKIN1	Q8WXD9	1431 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	PHLDB1	Q86UU1	1377 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	RAB3GAP2	Q9H2M9	1393 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	PATE3	B3GLJ2	98 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	SHOX	O15266	292 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	CD3E	P07766	207 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	ACR	P10323	421 aa		3.54	□□□□□ -1.84
SPG11-223	ENST00000560858	ZNF165	P49910	485 aa		3.54	□□□□□ -1.84

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