RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RMDN3Q96TC7 470 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 MPHOSPH6Q99547 160 aaKnown RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 NCOA5Q9HCD5 579 aaKnown RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 XPNPEP3Q9NQH7 507 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 V9GY48 417 aaPredicted RBP10.8□□□□□ -0.68
LDLR-211ENST00000560173 UNC80Q8N2C7 3258 aa10.8□□□□□ -0.68
LDLR-211ENST00000560173 LAMA3Q16787 3333 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 RBM47A0AV96 593 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 B4DLN1 442 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 PIK3CDO00329 1044 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 DNM1LO00429 736 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 ADAMTS4O75173 837 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 DUSP11O75319 330 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 EIF2AK2P19525 551 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 MRPL12P52815 198 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 CCT2P78371 535 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 LRRC41Q15345 812 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 NTRK3Q16288 839 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 TYW1BQ6NUM6 668 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 PPP1R18Q6NYC8 613 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 EEPD1Q7L9B9 569 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 NECAB2Q7Z6G3 386 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 ARRDC4Q8NCT1 418 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 IWS1Q96ST2 819 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 LARP6Q9BRS8 491 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 UPF3AQ9H1J1 476 aaKnown RBP10.79□□□□□ -0.68
LDLR-211ENST00000560173 PRO3102Q9H379 93 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 PXMP2Q9NR77 195 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 PDGFCQ9NRA1 345 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 FRMPD4Q14CM0 1322 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 SYNRGQ9UMZ2 1314 aa10.79□□□□□ -0.68
LDLR-211ENST00000560173 C11orf97A0A1B0GVM6 126 aaPredicted RBP10.78□□□□□ -0.68
LDLR-211ENST00000560173 hCG_1984214I3L0E3 225 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 STXBP3O00186 592 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 PGK1P00558 417 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 IFNAR1P17181 557 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 SMPD1P17405 629 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 ADCYAP1R1P41586 468 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 AK2P54819 239 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 TNFAIP2Q03169 654 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 ANKRD1Q15327 319 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 PFKFB3Q16875 520 aaPredicted RBP10.78□□□□□ -0.68
LDLR-211ENST00000560173 GJC2Q5T442 439 aaPredicted RBP10.78□□□□□ -0.68
LDLR-211ENST00000560173 ARHGEF16Q5VV41 709 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 IQSEC1Q6DN90 963 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 FCHSD1Q86WN1 690 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 ZNF713Q8N859 430 aaPredicted RBP10.78□□□□□ -0.68
LDLR-211ENST00000560173 IL31RAQ8NI17 732 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 PHKBQ93100 1093 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 KIF2CQ99661 725 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 PDCD2LQ9BRP1 358 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 C11orf49Q9H6J7 331 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 PSTPIP2Q9H939 334 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 BARHL2Q9NY43 387 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 TPCN1Q9ULQ1 816 aa10.78□□□□□ -0.68
LDLR-211ENST00000560173 GNEQ9Y223 722 aaKnown RBP10.78□□□□□ -0.68
LDLR-211ENST00000560173 MYADML2A6NDP7 307 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 KBTBD13C9JR72 458 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 MEIS2O14770 477 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 PRPF3O43395 683 aaKnown RBP10.77□□□□□ -0.69
LDLR-211ENST00000560173 PFKFB2O60825 505 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 NR3C2P08235 984 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 SCG2P13521 617 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 PTGS1P23219 599 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 CST5P28325 142 aaPredicted RBP10.77□□□□□ -0.69
LDLR-211ENST00000560173 RBM25P49756 843 aaKnown RBP10.77□□□□□ -0.69
LDLR-211ENST00000560173 NEK4P51957 841 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 NAPAP54920 295 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 GJA9P57773 515 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 NKX3-2P78367 333 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 PGM5Q15124 567 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 STXBP2Q15833 593 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 PKN1Q16512 942 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 TMEM63BQ5T3F8 832 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 USP17L6PQ6QN14 398 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 RNF180Q86T96 592 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 TEX2Q8IWB9 1127 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 KLHDC9Q8NEP7 349 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 SCFD2Q8WU76 684 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 DPF3Q92784 378 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 CUL5Q93034 780 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 HTATIP2Q9BUP3 242 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 RNF26Q9BY78 433 aaPredicted RBP10.77□□□□□ -0.69
LDLR-211ENST00000560173 BACH2Q9BYV9 841 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 C22orf23Q9BZE7 217 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 WDR11Q9BZH6 1224 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 PHF24Q9UPV7 400 aa10.77□□□□□ -0.69
LDLR-211ENST00000560173 CTAGE5O15320 804 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 PPFIA3O75145 1194 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 EIF3JO75822 258 aaKnown RBP10.76□□□□□ -0.69
LDLR-211ENST00000560173 MYCNP04198 464 aaPredicted RBP10.76□□□□□ -0.69
LDLR-211ENST00000560173 ADCY7P51828 1080 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 IRX5P78411 483 aaPredicted RBP10.76□□□□□ -0.69
LDLR-211ENST00000560173 SCRN1Q12765 414 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 STK3Q13188 491 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 UBE2SQ16763 222 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 DUSP28Q4G0W2 176 aa10.76□□□□□ -0.69
LDLR-211ENST00000560173 CCSAPQ6IQ19 270 aaPredicted RBP10.76□□□□□ -0.69
LDLR-211ENST00000560173 NOL8Q76FK4 1167 aaKnown RBP10.76□□□□□ -0.69
LDLR-211ENST00000560173 TLK2Q86UE8 772 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 207.4 ms