RNA–Protein interactions for RNA: ENST00000374487.6

HMGCL-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 2

Gene HMGCL, Length 2,151 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-202ENST00000374487 SYT10Q6XYQ8 523 aa13.59□□□□□ -0.23
HMGCL-202ENST00000374487 CABP7Q86V35 215 aa13.59□□□□□ -0.23
HMGCL-202ENST00000374487 TC2NQ8N9U0 490 aa13.59□□□□□ -0.23
HMGCL-202ENST00000374487 COA7Q96BR5 231 aa13.59□□□□□ -0.23
HMGCL-202ENST00000374487 CAPNS2Q96L46 248 aa13.59□□□□□ -0.23
HMGCL-202ENST00000374487 ADD3Q9UEY8 706 aaKnown RBP13.59□□□□□ -0.23
HMGCL-202ENST00000374487 AKR1B15C9JRZ8 316 aaPredicted RBP13.58□□□□□ -0.24
HMGCL-202ENST00000374487 SNHG28P0DPA3 235 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 SHMT1P34896 483 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 TECP42680 631 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 SPAG1Q07617 926 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 APTXQ7Z2E3 356 aaKnown RBP13.58□□□□□ -0.24
HMGCL-202ENST00000374487 IGSF22Q8N9C0 903 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 CUEDC2Q9H467 287 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 GDAQ9Y2T3 454 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 USP2O75604 605 aaPredicted RBP13.58□□□□□ -0.24
HMGCL-202ENST00000374487 PRCPP42785 496 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 ZNF543Q08ER8 600 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 ORC2Q13416 577 aaPredicted RBP13.58□□□□□ -0.24
HMGCL-202ENST00000374487 STIM1Q13586 685 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 CCDC96Q2M329 555 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 PPP4R3BQ5MIZ7 849 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 TMEM139Q8IV31 216 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 CPLX3Q8WVH0 158 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 KBTBD4Q9NVX7 518 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 TMEM260Q9NX78 707 aa13.58□□□□□ -0.24
HMGCL-202ENST00000374487 PNMA6FA0A0J9YX94 578 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 DDTLA6NHG4 134 aaPredicted RBP13.57□□□□□ -0.24
HMGCL-202ENST00000374487 FAM196BA6NMK8 535 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 N4BP3O15049 544 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 RAD21O60216 631 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 TPM1P09493 284 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 PLCG1P19174 1290 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 CCT6AP40227 531 aaKnown RBP13.57□□□□□ -0.24
HMGCL-202ENST00000374487 SYCP1Q15431 976 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 GPATCH4Q5T3I0 446 aaKnown RBP13.57□□□□□ -0.24
HMGCL-202ENST00000374487 ZSCAN29Q8IWY8 852 aaPredicted RBP13.57□□□□□ -0.24
HMGCL-202ENST00000374487 ADGRF4Q8IZF3 695 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 CCDC47Q96A33 483 aaKnown RBP13.57□□□□□ -0.24
HMGCL-202ENST00000374487 CCDC17Q96LX7 622 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 MAGEF1Q9HAY2 307 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 TMOD2Q9NZR1 351 aa13.57□□□□□ -0.24
HMGCL-202ENST00000374487 FAM155AB1AL88 458 aaPredicted RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 TXKP42681 527 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 ZNF157P51786 506 aaPredicted RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 ETF1P62495 437 aaKnown RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 KCNB1Q14721 858 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 CALCRLQ16602 461 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 KMT5BQ4FZB7 885 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 CNKSR2Q8WXI2 1034 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 CALML4Q96GE6 196 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 TRIM34Q9BYJ4 488 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 JMJD4Q9H9V9 463 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 PPP2R2CQ9Y2T4 447 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 GOLGA6L9A6NEM1 432 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 KCNJ18B7U540 433 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 AMPD3Q01432 767 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 RBL2Q08999 1139 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 NCBP1Q09161 790 aaKnown RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 SEMA3FQ13275 785 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 TNFAIP1Q13829 316 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 KCNJ12Q14500 433 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 KRT31Q15323 416 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 TCP11X2Q5H9J9 407 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 RGMBQ6NW40 437 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 POTEDQ86YR6 584 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 ADSSL1Q8N142 457 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 PDCL2Q8N4E4 241 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 ANKRD7Q92527 254 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 PANX2Q96RD6 677 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 ARID3AQ99856 593 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 EHD4Q9H223 541 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 VPS16Q9H269 839 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 DHX36Q9H2U1 1008 aaKnown RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 LIMA1Q9UHB6 759 aaKnown RBP13.56□□□□□ -0.24
HMGCL-202ENST00000374487 DNAI1Q9UI46 699 aa13.56□□□□□ -0.24
HMGCL-202ENST00000374487 LRRC10BA6NIK2 292 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 PSMA7O14818 248 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 SLC16A2P36021 539 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 TNNI2P48788 182 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 TMEM266Q2M3C6 531 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 TTBK2Q6IQ55 1244 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 KCTD1Q719H9 257 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 REXO1L1PQ8IX06 675 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 FAM151AQ8WW52 585 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 ZNF215Q9UL58 517 aaPredicted RBP13.55□□□□□ -0.24
HMGCL-202ENST00000374487 FOCADQ5VW36 1801 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 RHOBTB3O94955 611 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 SLU7O95391 586 aaKnown RBP13.55□□□□□ -0.24
HMGCL-202ENST00000374487 NF2P35240 595 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 PBX1P40424 430 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 PPP1R18Q6NYC8 613 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 FAM83AQ86UY5 434 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 ZKSCAN4Q969J2 545 aaPredicted RBP13.55□□□□□ -0.24
HMGCL-202ENST00000374487 IDI2Q9BXS1 227 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 RAB34Q9BZG1 259 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 RIC8AQ9NPQ8 531 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 PI4KBQ9UBF8 816 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 LRWD1Q9UFC0 647 aa13.55□□□□□ -0.24
HMGCL-202ENST00000374487 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms