RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 WHAMMP3Q1A5X7 153 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 PAPD7Q5XG87 772 aaKnown RBP11.29□□□□□ -0.6
COPB1-201ENST00000249923 TEX11Q8IYF3 940 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 CNBD1Q8NA66 436 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 RASSF4Q9H2L5 321 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 TXKP42681 527 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 DNM2P50570 870 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 MRPS25P82663 173 aaKnown RBP11.29□□□□□ -0.6
COPB1-201ENST00000249923 GABPAQ06546 454 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 SHROOM1Q2M3G4 852 aaPredicted RBP11.29□□□□□ -0.6
COPB1-201ENST00000249923 CENPPQ6IPU0 288 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 ZNF804AQ7Z570 1209 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 LRRC47Q8N1G4 583 aaKnown RBP11.29□□□□□ -0.6
COPB1-201ENST00000249923 AK8Q96MA6 479 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 ARHGAP20Q9P2F6 1191 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 SALL4Q9UJQ4 1053 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 ADAM21Q9UKJ8 722 aa11.29□□□□□ -0.6
COPB1-201ENST00000249923 SIPA1L1O43166 1804 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 FAM170AA1A519 330 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 ATP2B2Q01814 1243 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 MXD3Q9BW11 206 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CAPN6Q9Y6Q1 641 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 IGKV6D-41A0A0C4DH26 115 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CTAGE15A4D2H0 777 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CTAGE8P0CG41 777 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 AKR1B1P15121 316 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 SF3A3Q12874 501 aaKnown RBP eCLIP11.28□□□□□ -0.6
COPB1-201ENST00000249923 MFSD14BQ5SR56 506 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CCDC122Q5T0U0 273 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 LRRC55Q6ZSA7 311 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 KRT25Q7Z3Z0 450 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CTAGE6Q86UF2 777 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CTAGE4Q8IX94 777 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 ERGIC2Q96RQ1 377 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 FAM107BQ9H098 131 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 MYH10P35580 1976 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 SNHG28P0DPA3 235 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 TRIM21P19474 475 aaKnown RBP11.28□□□□□ -0.6
COPB1-201ENST00000249923 GSTO1P78417 241 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 TBC1D8BQ0IIM8 1120 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 TTC19Q6DKK2 380 aaPredicted RBP11.28□□□□□ -0.6
COPB1-201ENST00000249923 ZNF662Q6ZS27 426 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 GSPT2Q8IYD1 628 aaKnown RBP11.28□□□□□ -0.6
COPB1-201ENST00000249923 REXO1Q8N1G1 1221 aaKnown RBP11.28□□□□□ -0.6
COPB1-201ENST00000249923 CERS5Q8N5B7 392 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CERKQ8TCT0 537 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 HAS1Q92839 578 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 UIMC1Q96RL1 719 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 CENPHQ9H3R5 247 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 HAUS4Q9H6D7 363 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 POLD4Q9HCU8 107 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 DAGLAQ9Y4D2 1042 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 PLIN4Q96Q06 1357 aa11.28□□□□□ -0.6
COPB1-201ENST00000249923 RFC4P35249 363 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 GTF2A1P52655 376 aaPredicted RBP11.27□□□□□ -0.61
COPB1-201ENST00000249923 CASP8Q14790 479 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 UBE2SQ16763 222 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 COBLL1Q53SF7 1204 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 DYMQ7RTS9 669 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 TXLNBQ8N3L3 684 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 ANKRD20A12PQ8NF67 263 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 CUEDC2Q9H467 287 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 MTMR4Q9NYA4 1195 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 QSER1Q2KHR3 1735 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 H0YHG0 523 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 GYS1P13807 737 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 ZBED6P86452 979 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 APBA1Q02410 837 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 TTBK2Q6IQ55 1244 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 WDR93Q6P2C0 686 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 AEBP2Q6ZN18 517 aaPredicted RBP11.27□□□□□ -0.61
COPB1-201ENST00000249923 TBC1D16Q8TBP0 767 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 RRP36Q96EU6 259 aaKnown RBP11.27□□□□□ -0.61
COPB1-201ENST00000249923 FAM163AQ96GL9 167 aaPredicted RBP11.27□□□□□ -0.61
COPB1-201ENST00000249923 LZTS2Q9BRK4 669 aa11.27□□□□□ -0.61
COPB1-201ENST00000249923 ANKRD31Q8N7Z5 1873 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 EIF3CLB5ME19 914 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 CLK2P49760 499 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 NAP1L1P55209 391 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 LRRC41Q15345 812 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 PSMB7Q99436 277 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 EIF3CQ99613 913 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 NOC4LQ9BVI4 516 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 MYH4Q9Y623 1939 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 ESYT2A0FGR8 921 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 FXR2P51116 673 aaKnown RBP eCLIP11.26□□□□□ -0.611e-7■■■■□ 25
COPB1-201ENST00000249923 DDR1Q08345 913 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 TRAPPC3LQ5T215 181 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 BAP1Q92560 729 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 JAKMIP2Q96AA8 810 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 NGLY1Q96IV0 654 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 P2RX7Q99572 595 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 MLXIPQ9HAP2 919 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 MAGEF1Q9HAY2 307 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 C6orf50Q9HD87 102 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 SMARCAL1Q9NZC9 954 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 LRWD1Q9UFC0 647 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 NRXN2Q9P2S2 1712 aa11.26□□□□□ -0.61
COPB1-201ENST00000249923 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.26□□□□□ -0.61
COPB1-201ENST00000249923 MACROD2A1Z1Q3 448 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms