RNA–Protein interactions for RNA: ENST00000641720.1

PHGDH-225, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 548 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-225ENST00000641720 KIF14Q15058 1648 aa12.64□□□□□ -0.39
PHGDH-225ENST00000641720 LTBP4Q8N2S1 1624 aa12.64□□□□□ -0.39
PHGDH-225ENST00000641720 CERKQ8TCT0 537 aa12.64□□□□□ -0.39
PHGDH-225ENST00000641720 CDC42BPBQ9Y5S2 1711 aa12.64□□□□□ -0.39
PHGDH-225ENST00000641720 SPATA31D1Q6ZQQ2 1576 aa12.64□□□□□ -0.39
PHGDH-225ENST00000641720 ABCA6Q8N139 1617 aa12.63□□□□□ -0.39
PHGDH-225ENST00000641720 DIP2CQ9Y2E4 1556 aa12.63□□□□□ -0.39
PHGDH-225ENST00000641720 ARID4BQ4LE39 1312 aaPredicted RBP12.6□□□□□ -0.39
PHGDH-225ENST00000641720 ATP10AO60312 1499 aa12.59□□□□□ -0.39
PHGDH-225ENST00000641720 PLCH2O75038 1416 aa12.59□□□□□ -0.39
PHGDH-225ENST00000641720 C9orf84Q5VXU9 1444 aa12.59□□□□□ -0.39
PHGDH-225ENST00000641720 KIDINS220Q9ULH0 1771 aa12.58□□□□□ -0.4
PHGDH-225ENST00000641720 ITSN2Q9NZM3 1697 aa12.57□□□□□ -0.4
PHGDH-225ENST00000641720 SCAPERQ9BY12 1400 aa12.56□□□□□ -0.4
PHGDH-225ENST00000641720 MROH2AA6NES4 1674 aa12.56□□□□□ -0.4
PHGDH-225ENST00000641720 PREX2Q70Z35 1606 aa12.55□□□□□ -0.4
PHGDH-225ENST00000641720 SOCS7O14512 581 aa12.55□□□□□ -0.4
PHGDH-225ENST00000641720 ZNF142P52746 1687 aaPredicted RBP12.54□□□□□ -0.4
PHGDH-225ENST00000641720 CDC42BPAQ5VT25 1732 aa12.54□□□□□ -0.4
PHGDH-225ENST00000641720 IQSEC2Q5JU85 1478 aa12.54□□□□□ -0.4
PHGDH-225ENST00000641720 AGLP35573 1532 aa12.54□□□□□ -0.4
PHGDH-225ENST00000641720 PTPRTO14522 1441 aa12.54□□□□□ -0.4
PHGDH-225ENST00000641720 ZNF518AQ6AHZ1 1483 aa12.52□□□□□ -0.41
PHGDH-225ENST00000641720 ABCC1P33527 1531 aa12.52□□□□□ -0.41
PHGDH-225ENST00000641720 CSRNP3Q8WYN3 585 aa12.51□□□□□ -0.41
PHGDH-225ENST00000641720 DISP3Q9P2K9 1392 aa12.51□□□□□ -0.41
PHGDH-225ENST00000641720 PLEKHD1A6NEE1 506 aa12.5□□□□□ -0.41
PHGDH-225ENST00000641720 CEBPAP49715 358 aaPredicted RBP12.5□□□□□ -0.41
PHGDH-225ENST00000641720 UHRF1BP1Q6BDS2 1440 aa12.5□□□□□ -0.41
PHGDH-225ENST00000641720 SUPT6HQ7KZ85 1726 aaKnown RBP12.49□□□□□ -0.41
PHGDH-225ENST00000641720 MLH3Q9UHC1 1453 aa12.49□□□□□ -0.41
PHGDH-225ENST00000641720 NCOA1Q15788 1441 aa12.49□□□□□ -0.41
PHGDH-225ENST00000641720 EEA1Q15075 1411 aa12.48□□□□□ -0.41
PHGDH-225ENST00000641720 MLECQ14165 292 aa12.48□□□□□ -0.41
PHGDH-225ENST00000641720 MYO3AQ8NEV4 1616 aa12.48□□□□□ -0.41
PHGDH-225ENST00000641720 ARHGAP35Q9NRY4 1499 aa12.47□□□□□ -0.41
PHGDH-225ENST00000641720 PLPPR3Q6T4P5 718 aa12.47□□□□□ -0.41
PHGDH-225ENST00000641720 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.46□□□□□ -0.41
PHGDH-225ENST00000641720 HNRNPUL2Q1KMD3 747 aaKnown RBP12.46□□□□□ -0.41
PHGDH-225ENST00000641720 CHIC1Q5VXU3 224 aa12.46□□□□□ -0.41
PHGDH-225ENST00000641720 CAMSAP1Q5T5Y3 1602 aa12.45□□□□□ -0.42
PHGDH-225ENST00000641720 PLXNC1O60486 1568 aa12.45□□□□□ -0.42
PHGDH-225ENST00000641720 ARHGAP5Q13017 1502 aa12.45□□□□□ -0.42
PHGDH-225ENST00000641720 TROQ12816 1431 aaPredicted RBP12.45□□□□□ -0.42
PHGDH-225ENST00000641720 CLTCQ00610 1675 aaKnown RBP12.44□□□□□ -0.42
PHGDH-225ENST00000641720 TRAPPC8Q9Y2L5 1435 aa12.44□□□□□ -0.42
PHGDH-225ENST00000641720 SAMD9LQ8IVG5 1584 aa12.43□□□□□ -0.42
PHGDH-225ENST00000641720 INO80Q9ULG1 1556 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-225ENST00000641720 POLR1AO95602 1720 aaPredicted RBP12.42□□□□□ -0.42
PHGDH-225ENST00000641720 AFAP1Q8N556 730 aa12.41□□□□□ -0.42
PHGDH-225ENST00000641720 ALKQ9UM73 1620 aa12.4□□□□□ -0.42
PHGDH-225ENST00000641720 TCOF1Q13428 1488 aaKnown RBP12.4□□□□□ -0.42
PHGDH-225ENST00000641720 FAM9AQ8IZU1 332 aaPredicted RBP12.4□□□□□ -0.42
PHGDH-225ENST00000641720 CEP170BQ9Y4F5 1589 aaPredicted RBP12.39□□□□□ -0.43
PHGDH-225ENST00000641720 NPATQ14207 1427 aa12.39□□□□□ -0.43
PHGDH-225ENST00000641720 FMN1Q68DA7 1419 aa12.39□□□□□ -0.43
PHGDH-225ENST00000641720 EFCAB2Q5VUJ9 269 aa12.39□□□□□ -0.43
PHGDH-225ENST00000641720 DMRT2Q9Y5R5 561 aa12.39□□□□□ -0.43
PHGDH-225ENST00000641720 PLA2R1Q13018 1463 aa12.38□□□□□ -0.43
PHGDH-225ENST00000641720 NEURL4Q96JN8 1562 aa12.38□□□□□ -0.43
PHGDH-225ENST00000641720 MED1Q15648 1581 aaPredicted RBP12.37□□□□□ -0.43
PHGDH-225ENST00000641720 CNTLNQ9NXG0 1405 aa12.37□□□□□ -0.43
PHGDH-225ENST00000641720 ADGBQ8N7X0 1667 aa12.35□□□□□ -0.43
PHGDH-225ENST00000641720 RANGAP1P46060 587 aaPredicted RBP12.35□□□□□ -0.43
PHGDH-225ENST00000641720 DNMT1P26358 1616 aaKnown RBP12.35□□□□□ -0.43
PHGDH-225ENST00000641720 SYCP2Q9BX26 1530 aa12.35□□□□□ -0.43
PHGDH-225ENST00000641720 STRCP1A6NGW2 1772 aa12.35□□□□□ -0.43
PHGDH-225ENST00000641720 ATP7AQ04656 1500 aa12.33□□□□□ -0.44
PHGDH-225ENST00000641720 PTPRKQ15262 1439 aa12.33□□□□□ -0.44
PHGDH-225ENST00000641720 ZNF335Q9H4Z2 1342 aaPredicted RBP12.32□□□□□ -0.44
PHGDH-225ENST00000641720 CLIP1P30622 1438 aa12.31□□□□□ -0.44
PHGDH-225ENST00000641720 CCDC18Q5T9S5 1454 aa12.3□□□□□ -0.44
PHGDH-225ENST00000641720 VWDEQ8N2E2 1590 aa12.3□□□□□ -0.44
PHGDH-225ENST00000641720 CASKIN1Q8WXD9 1431 aa12.29□□□□□ -0.44
PHGDH-225ENST00000641720 XIRP1Q702N8 1843 aaKnown RBP12.29□□□□□ -0.44
PHGDH-225ENST00000641720 ZMYM3Q14202 1370 aa12.29□□□□□ -0.44
PHGDH-225ENST00000641720 GPATCH8Q9UKJ3 1502 aaKnown RBP12.28□□□□□ -0.44
PHGDH-225ENST00000641720 NCKAP5LQ9HCH0 1330 aa12.26□□□□□ -0.45
PHGDH-225ENST00000641720 A2ML1A8K2U0 1454 aa12.26□□□□□ -0.45
PHGDH-225ENST00000641720 ZC3H13Q5T200 1668 aaKnown RBP12.26□□□□□ -0.45
PHGDH-225ENST00000641720 A2MP01023 1474 aa12.25□□□□□ -0.45
PHGDH-225ENST00000641720 FYCO1Q9BQS8 1478 aa12.25□□□□□ -0.45
PHGDH-225ENST00000641720 DEPDC5O75140 1603 aa12.25□□□□□ -0.45
PHGDH-225ENST00000641720 CPS1P31327 1500 aa12.24□□□□□ -0.45
PHGDH-225ENST00000641720 TIAM1Q13009 1591 aa12.24□□□□□ -0.45
PHGDH-225ENST00000641720 KIAA1107Q9UPP5 1409 aa12.24□□□□□ -0.45
PHGDH-225ENST00000641720 CDK11AQ9UQ88 783 aaPredicted RBP12.24□□□□□ -0.45
PHGDH-225ENST00000641720 IQGAP1P46940 1657 aa12.22□□□□□ -0.45
PHGDH-225ENST00000641720 FAM135AQ9P2D6 1515 aa12.21□□□□□ -0.45
PHGDH-225ENST00000641720 MBD5Q9P267 1494 aa12.21□□□□□ -0.45
PHGDH-225ENST00000641720 UBAP1LF5GYI3 381 aa12.2□□□□□ -0.46
PHGDH-225ENST00000641720 PKD2Q13563 968 aa12.2□□□□□ -0.46
PHGDH-225ENST00000641720 MED14O60244 1454 aa12.2□□□□□ -0.46
PHGDH-225ENST00000641720 SHANK2Q9UPX8 1470 aa12.2□□□□□ -0.46
PHGDH-225ENST00000641720 SYNMO15061 1565 aa12.19□□□□□ -0.46
PHGDH-225ENST00000641720 RNF17Q9BXT8 1623 aaKnown RBP12.19□□□□□ -0.46
PHGDH-225ENST00000641720 HSPA1LP34931 641 aa12.18□□□□□ -0.46
PHGDH-225ENST00000641720 PZPP20742 1482 aa12.18□□□□□ -0.46
PHGDH-225ENST00000641720 PLEKHH2Q8IVE3 1493 aa12.18□□□□□ -0.46
PHGDH-225ENST00000641720 CFAP65Q6ZU64 1925 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms