RNA–Protein interactions for RNA: ENST00000641213.1

PHGDH-211, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 2,053 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-211ENST00000641213 DENND4BO75064 1496 aaPredicted RBP24.49■■□□□ 1.51
PHGDH-211ENST00000641213 ROCK1Q13464 1354 aa24.48■■□□□ 1.51
PHGDH-211ENST00000641213 ZNF644Q9H582 1327 aaPredicted RBP24.47■■□□□ 1.51
PHGDH-211ENST00000641213 CHD1O14646 1710 aa24.47■■□□□ 1.51
PHGDH-211ENST00000641213 GTF3C3Q9Y5Q9 886 aa24.46■■□□□ 1.51
PHGDH-211ENST00000641213 TRIM52Q96A61 297 aa24.44■■□□□ 1.5
PHGDH-211ENST00000641213 GPATCH8Q9UKJ3 1502 aaKnown RBP24.43■■□□□ 1.5
PHGDH-211ENST00000641213 CAMSAP2Q08AD1 1489 aa24.43■■□□□ 1.5
PHGDH-211ENST00000641213 KDM5BQ9UGL1 1544 aa24.42■■□□□ 1.5
PHGDH-211ENST00000641213 ADGBQ8N7X0 1667 aa24.42■■□□□ 1.5
PHGDH-211ENST00000641213 CDC42BPAQ5VT25 1732 aa24.4■■□□□ 1.5
PHGDH-211ENST00000641213 CROCC2H7BZ55 1655 aa24.4■■□□□ 1.5
PHGDH-211ENST00000641213 CFDP1Q9UEE9 299 aaPredicted RBP24.39■■□□□ 1.49
PHGDH-211ENST00000641213 ATP10BO94823 1461 aa24.38■■□□□ 1.49
PHGDH-211ENST00000641213 MPHOSPH9Q99550 1183 aa24.38■■□□□ 1.49
PHGDH-211ENST00000641213 PLEKHD1A6NEE1 506 aa24.33■■□□□ 1.48
PHGDH-211ENST00000641213 ABCC10Q5T3U5 1492 aa24.33■■□□□ 1.48
PHGDH-211ENST00000641213 SHROOM2Q13796 1616 aa24.32■■□□□ 1.48
PHGDH-211ENST00000641213 DDX10Q13206 875 aaKnown RBP24.31■■□□□ 1.48
PHGDH-211ENST00000641213 HIRIP3Q9BW71 556 aaPredicted RBP24.31■■□□□ 1.48
PHGDH-211ENST00000641213 PTPRGP23470 1445 aa24.3■■□□□ 1.48
PHGDH-211ENST00000641213 ADGRL2O95490 1459 aa24.29■■□□□ 1.48
PHGDH-211ENST00000641213 NCOA1Q15788 1441 aa24.28■■□□□ 1.48
PHGDH-211ENST00000641213 ZNF777Q9ULD5 760 aaPredicted RBP24.28■■□□□ 1.48
PHGDH-211ENST00000641213 FOXD1Q16676 465 aa24.25■■□□□ 1.47
PHGDH-211ENST00000641213 ANKRD30BQ9BXX2 1392 aa24.24■■□□□ 1.47
PHGDH-211ENST00000641213 PZPP20742 1482 aa24.2■■□□□ 1.47
PHGDH-211ENST00000641213 RPRD2Q5VT52 1461 aaKnown RBP24.2■■□□□ 1.46
PHGDH-211ENST00000641213 ANKRD30AQ9BXX3 1397 aa24.19■■□□□ 1.46
PHGDH-211ENST00000641213 CDC42BPBQ9Y5S2 1711 aa24.19■■□□□ 1.46
PHGDH-211ENST00000641213 SLC4A1APQ9BWU0 796 aaKnown RBP24.19■■□□□ 1.46
PHGDH-211ENST00000641213 SHANK2Q9UPX8 1470 aa24.18■■□□□ 1.46
PHGDH-211ENST00000641213 L3MBTL2Q969R5 705 aa24.16■■□□□ 1.46
PHGDH-211ENST00000641213 PREX2Q70Z35 1606 aa24.16■■□□□ 1.46
PHGDH-211ENST00000641213 ERCC6L2Q5T890 1561 aa24.15■■□□□ 1.46
PHGDH-211ENST00000641213 ARHGEF5Q12774 1597 aa24.14■■□□□ 1.46
PHGDH-211ENST00000641213 KCNH8Q96L42 1107 aa24.14■■□□□ 1.46
PHGDH-211ENST00000641213 C9orf84Q5VXU9 1444 aa24.13■■□□□ 1.45
PHGDH-211ENST00000641213 TEX14Q8IWB6 1497 aa24.13■■□□□ 1.45
PHGDH-211ENST00000641213 ANKRD50Q9ULJ7 1429 aa24.11■■□□□ 1.45
PHGDH-211ENST00000641213 SAMD9LQ8IVG5 1584 aa24.11■■□□□ 1.45
PHGDH-211ENST00000641213 ABCC2Q92887 1545 aa24.09■■□□□ 1.45
PHGDH-211ENST00000641213 HSPA5P11021 654 aaKnown RBP24.07■■□□□ 1.44
PHGDH-211ENST00000641213 MBD5Q9P267 1494 aa24.07■■□□□ 1.44
PHGDH-211ENST00000641213 KIAA1107Q9UPP5 1409 aa24.07■■□□□ 1.44
PHGDH-211ENST00000641213 CLASP1Q7Z460 1538 aa24.07■■□□□ 1.44
PHGDH-211ENST00000641213 TTC37Q6PGP7 1564 aa24.07■■□□□ 1.44
PHGDH-211ENST00000641213 HNRNPMP52272 730 aaKnown RBP eCLIP24.05■■□□□ 1.441e-6■■■■□ 22.8
PHGDH-211ENST00000641213 ANP32CO43423 234 aa24.04■■□□□ 1.44
PHGDH-211ENST00000641213 TSPY4P0CV99 314 aa24.04■■□□□ 1.44
PHGDH-211ENST00000641213 TSPY10P0CW01 314 aa24.04■■□□□ 1.44
PHGDH-211ENST00000641213 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP24.03■■□□□ 1.446e-6■■■■■ 38.2
PHGDH-211ENST00000641213 EIF4G2P78344 907 aaKnown RBP eCLIP24.03■■□□□ 1.447e-14■■■■■ 63.8
PHGDH-211ENST00000641213 MYO5CQ9NQX4 1742 aa24.03■■□□□ 1.44
PHGDH-211ENST00000641213 CCER2I3L3R5 266 aa24.02■■□□□ 1.44
PHGDH-211ENST00000641213 CCDC141Q6ZP82 1450 aa24.02■■□□□ 1.44
PHGDH-211ENST00000641213 KDM5DQ9BY66 1539 aa24.02■■□□□ 1.44
PHGDH-211ENST00000641213 NBPF8Q3BBV2 869 aa24.01■■□□□ 1.43
PHGDH-211ENST00000641213 PKD2Q13563 968 aa24■■□□□ 1.43
PHGDH-211ENST00000641213 WASHC2AQ641Q2 1341 aa23.99■■□□□ 1.43
PHGDH-211ENST00000641213 KIF15Q9NS87 1388 aa23.99■■□□□ 1.43
PHGDH-211ENST00000641213 ARHGAP5Q13017 1502 aa23.98■■□□□ 1.43
PHGDH-211ENST00000641213 ZCCHC11Q5TAX3 1644 aaKnown RBP23.98■■□□□ 1.43
PHGDH-211ENST00000641213 POLR1AO95602 1720 aaPredicted RBP23.97■■□□□ 1.43
PHGDH-211ENST00000641213 NUP155O75694 1391 aa23.97■■□□□ 1.43
PHGDH-211ENST00000641213 SYCP2Q9BX26 1530 aa23.97■■□□□ 1.43
PHGDH-211ENST00000641213 RSPH4AQ5TD94 716 aa23.96■■□□□ 1.43
PHGDH-211ENST00000641213 MAST1Q9Y2H9 1570 aa23.95■■□□□ 1.42
PHGDH-211ENST00000641213 UHRF1BP1LA0JNW5 1464 aa23.92■■□□□ 1.42
PHGDH-211ENST00000641213 SPATA31E1Q6ZUB1 1445 aa23.9■■□□□ 1.42
PHGDH-211ENST00000641213 PLEKHH2Q8IVE3 1493 aa23.87■■□□□ 1.41
PHGDH-211ENST00000641213 C11orf95C9JLR9 678 aaPredicted RBP23.87■■□□□ 1.41
PHGDH-211ENST00000641213 CCDC7Q96M83 1385 aa23.86■■□□□ 1.41
PHGDH-211ENST00000641213 PLXNC1O60486 1568 aa23.86■■□□□ 1.41
PHGDH-211ENST00000641213 CNTLNQ9NXG0 1405 aa23.85■■□□□ 1.41
PHGDH-211ENST00000641213 FAM135AQ9P2D6 1515 aa23.85■■□□□ 1.41
PHGDH-211ENST00000641213 UNC13BO14795 1591 aa23.85■■□□□ 1.41
PHGDH-211ENST00000641213 PLCH2O75038 1416 aa23.82■■□□□ 1.4
PHGDH-211ENST00000641213 ARHGEF12Q9NZN5 1544 aa23.82■■□□□ 1.4
PHGDH-211ENST00000641213 UHRF1BP1Q6BDS2 1440 aa23.8■■□□□ 1.4
PHGDH-211ENST00000641213 KDM5CP41229 1560 aa23.78■■□□□ 1.4
PHGDH-211ENST00000641213 PELP1Q8IZL8 1130 aaKnown RBP23.78■■□□□ 1.4
PHGDH-211ENST00000641213 BCORL1Q5H9F3 1711 aa23.76■■□□□ 1.39
PHGDH-211ENST00000641213 ABCC1P33527 1531 aa23.76■■□□□ 1.39
PHGDH-211ENST00000641213 IQGAP3Q86VI3 1631 aa23.76■■□□□ 1.39
PHGDH-211ENST00000641213 KIF7Q2M1P5 1343 aa23.76■■□□□ 1.39
PHGDH-211ENST00000641213 ZNF326Q5BKZ1 582 aaKnown RBP23.75■■□□□ 1.39
PHGDH-211ENST00000641213 SUPT16HQ9Y5B9 1047 aaKnown RBP23.75■■□□□ 1.39
PHGDH-211ENST00000641213 DUOX2Q9NRD8 1548 aa23.75■■□□□ 1.39
PHGDH-211ENST00000641213 RALGAPBQ86X10 1494 aa23.75■■□□□ 1.39
PHGDH-211ENST00000641213 EFCAB2Q5VUJ9 269 aa23.74■■□□□ 1.39
PHGDH-211ENST00000641213 USP47Q96K76 1375 aa23.73■■□□□ 1.39
PHGDH-211ENST00000641213 ARAP3Q8WWN8 1544 aa23.7■■□□□ 1.39
PHGDH-211ENST00000641213 ERBINQ96RT1 1412 aa23.68■■□□□ 1.38
PHGDH-211ENST00000641213 MAGI2Q86UL8 1455 aa23.68■■□□□ 1.38
PHGDH-211ENST00000641213 TRAPPC8Q9Y2L5 1435 aa23.67■■□□□ 1.38
PHGDH-211ENST00000641213 PLA2R1Q13018 1463 aa23.66■■□□□ 1.38
PHGDH-211ENST00000641213 CCDC144AA2RUR9 1427 aa23.66■■□□□ 1.38
PHGDH-211ENST00000641213 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.66■■□□□ 1.385e-16■■□□□ 13.6
PHGDH-211ENST00000641213 PRKRIP1Q9H875 184 aaPredicted RBP23.66■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms