RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 SF3B2Q13435 895 aaKnown RBP7.83□□□□□ -1.16
SCN1A-217ENST00000637988 NOC3LQ8WTT2 800 aaKnown RBP7.83□□□□□ -1.16
SCN1A-217ENST00000637988 TPRNQ4KMQ1 711 aa7.83□□□□□ -1.16
SCN1A-217ENST00000637988 CCDC34Q96HJ3 373 aa7.83□□□□□ -1.16
SCN1A-217ENST00000637988 CARD11Q9BXL7 1154 aa7.83□□□□□ -1.16
SCN1A-217ENST00000637988 WASHC2AQ641Q2 1341 aa7.82□□□□□ -1.16
SCN1A-217ENST00000637988 CCNB3Q8WWL7 1395 aa7.82□□□□□ -1.16
SCN1A-217ENST00000637988 GPATCH3Q96I76 525 aa7.82□□□□□ -1.16
SCN1A-217ENST00000637988 DNTTIP2Q5QJE6 756 aaKnown RBP7.82□□□□□ -1.16
SCN1A-217ENST00000637988 SPAG9O60271 1321 aaKnown RBP7.82□□□□□ -1.16
SCN1A-217ENST00000637988 KLHL34Q8N239 644 aa7.81□□□□□ -1.16
SCN1A-217ENST00000637988 TNNT2P45379 298 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-217ENST00000637988 VPS53Q5VIR6 699 aa7.81□□□□□ -1.16
SCN1A-217ENST00000637988 KIAA1211Q6ZU35 1233 aa7.81□□□□□ -1.16
SCN1A-217ENST00000637988 CHMP3Q9Y3E7 222 aa7.81□□□□□ -1.16
SCN1A-217ENST00000637988 GGT6Q6P531 493 aa7.81□□□□□ -1.16
SCN1A-217ENST00000637988 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.81□□□□□ -1.16
SCN1A-217ENST00000637988 NEUROD2Q15784 382 aa7.8□□□□□ -1.16
SCN1A-217ENST00000637988 NOL10Q9BSC4 688 aaKnown RBP7.8□□□□□ -1.16
SCN1A-217ENST00000637988 AMOTL1Q8IY63 956 aa7.79□□□□□ -1.16
SCN1A-217ENST00000637988 TMF1P82094 1093 aa7.79□□□□□ -1.16
SCN1A-217ENST00000637988 CEP89Q96ST8 783 aa7.79□□□□□ -1.16
SCN1A-217ENST00000637988 PDS5BQ9NTI5 1447 aa7.78□□□□□ -1.16
SCN1A-217ENST00000637988 STK26Q9P289 416 aa7.78□□□□□ -1.16
SCN1A-217ENST00000637988 NGDNQ8NEJ9 315 aaKnown RBP7.77□□□□□ -1.17
SCN1A-217ENST00000637988 EIF3AQ14152 1382 aaKnown RBP7.77□□□□□ -1.17
SCN1A-217ENST00000637988 MARCH6O60337 910 aa7.77□□□□□ -1.17
SCN1A-217ENST00000637988 HSP90AB1P08238 724 aaKnown RBP7.77□□□□□ -1.17
SCN1A-217ENST00000637988 GTF3C3Q9Y5Q9 886 aa7.77□□□□□ -1.17
SCN1A-217ENST00000637988 HTATSF1O43719 755 aaKnown RBP7.76□□□□□ -1.17
SCN1A-217ENST00000637988 FHAD1B1AJZ9 1412 aa7.76□□□□□ -1.17
SCN1A-217ENST00000637988 SAFB2Q14151 953 aaKnown RBP eCLIP7.76□□□□□ -1.17
SCN1A-217ENST00000637988 PLCB2Q00722 1185 aa7.76□□□□□ -1.17
SCN1A-217ENST00000637988 MORC1Q86VD1 984 aa7.76□□□□□ -1.17
SCN1A-217ENST00000637988 RASSF8Q8NHQ8 419 aa7.75□□□□□ -1.17
SCN1A-217ENST00000637988 GOLGA3Q08378 1498 aa7.75□□□□□ -1.17
SCN1A-217ENST00000637988 WRNQ14191 1432 aaPredicted RBP eCLIP7.75□□□□□ -1.17
SCN1A-217ENST00000637988 FRAT1Q92837 279 aaPredicted RBP7.75□□□□□ -1.17
SCN1A-217ENST00000637988 EEA1Q15075 1411 aa7.75□□□□□ -1.17
SCN1A-217ENST00000637988 IPO8O15397 1037 aaKnown RBP7.74□□□□□ -1.17
SCN1A-217ENST00000637988 STK31Q9BXU1 1019 aa7.74□□□□□ -1.17
SCN1A-217ENST00000637988 TPM4P67936 248 aa7.73□□□□□ -1.17
SCN1A-217ENST00000637988 DRC7Q8IY82 874 aa7.73□□□□□ -1.17
SCN1A-217ENST00000637988 AMPHP49418 695 aa7.73□□□□□ -1.17
SCN1A-217ENST00000637988 CCAR1Q8IX12 1150 aaKnown RBP7.73□□□□□ -1.17
SCN1A-217ENST00000637988 HMGB2P26583 209 aaKnown RBP7.72□□□□□ -1.17
SCN1A-217ENST00000637988 CEP162Q5TB80 1403 aa7.72□□□□□ -1.17
SCN1A-217ENST00000637988 A0A0U1RQG5 324 aaPredicted RBP7.72□□□□□ -1.17
SCN1A-217ENST00000637988 C1orf141Q5JVX7 400 aa7.72□□□□□ -1.17
SCN1A-217ENST00000637988 TERF2IPQ9NYB0 399 aa7.72□□□□□ -1.17
SCN1A-217ENST00000637988 EFCAB2Q5VUJ9 269 aa7.72□□□□□ -1.17
SCN1A-217ENST00000637988 CC2D1BQ5T0F9 858 aaKnown RBP7.71□□□□□ -1.17
SCN1A-217ENST00000637988 LRRFIP1Q32MZ4 808 aaKnown RBP7.71□□□□□ -1.18
SCN1A-217ENST00000637988 USP35Q9P2H5 1018 aa7.71□□□□□ -1.18
SCN1A-217ENST00000637988 VPS37DQ86XT2 251 aa7.71□□□□□ -1.18
SCN1A-217ENST00000637988 WASHC2CQ9Y4E1 1318 aa7.71□□□□□ -1.18
SCN1A-217ENST00000637988 ATF3P18847 181 aa7.71□□□□□ -1.18
SCN1A-217ENST00000637988 PRDM2Q13029 1718 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 FBXW7Q969H0 707 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 NBR1Q14596 966 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 DCAF11Q8TEB1 546 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 WWC2Q6AWC2 1192 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 HSP90B1P14625 803 aaKnown RBP7.7□□□□□ -1.18
SCN1A-217ENST00000637988 SMARCA2P51531 1590 aa7.7□□□□□ -1.18
SCN1A-217ENST00000637988 HSCBQ8IWL3 235 aa7.69□□□□□ -1.18
SCN1A-217ENST00000637988 SYTL4Q96C24 671 aaPredicted RBP7.69□□□□□ -1.18
SCN1A-217ENST00000637988 LMOD3Q0VAK6 560 aa7.69□□□□□ -1.18
SCN1A-217ENST00000637988 CCDC43Q96MW1 224 aaKnown RBP7.69□□□□□ -1.18
SCN1A-217ENST00000637988 RAD21O60216 631 aa7.68□□□□□ -1.18
SCN1A-217ENST00000637988 TTC5Q8N0Z6 440 aa7.68□□□□□ -1.18
SCN1A-217ENST00000637988 RBM33Q96EV2 1170 aaKnown RBP7.68□□□□□ -1.18
SCN1A-217ENST00000637988 AKAP17AQ02040 695 aaKnown RBP7.68□□□□□ -1.18
SCN1A-217ENST00000637988 CHMP4CQ96CF2 233 aa7.68□□□□□ -1.18
SCN1A-217ENST00000637988 TOMM22Q9NS69 142 aa7.68□□□□□ -1.18
SCN1A-217ENST00000637988 BAZ1AQ9NRL2 1556 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-217ENST00000637988 KIF3AQ9Y496 699 aa7.67□□□□□ -1.18
SCN1A-217ENST00000637988 CEP164Q9UPV0 1460 aa7.67□□□□□ -1.18
SCN1A-217ENST00000637988 PPP1R1BQ9UD71 204 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-217ENST00000637988 OSCARQ8IYS5 282 aa7.67□□□□□ -1.18
SCN1A-217ENST00000637988 HMMRO75330 724 aa7.67□□□□□ -1.18
SCN1A-217ENST00000637988 TPM2P07951 284 aa7.67□□□□□ -1.18
SCN1A-217ENST00000637988 SMC4Q9NTJ3 1288 aa7.66□□□□□ -1.18
SCN1A-217ENST00000637988 R3HCC1Q9Y3T6 440 aaKnown RBP7.66□□□□□ -1.18
SCN1A-217ENST00000637988 PSME1Q06323 249 aa7.66□□□□□ -1.18
SCN1A-217ENST00000637988 PDE4CQ08493 712 aa7.66□□□□□ -1.18
SCN1A-217ENST00000637988 UACAQ9BZF9 1416 aa7.66□□□□□ -1.18
SCN1A-217ENST00000637988 CSPP1Q1MSJ5 1256 aa7.65□□□□□ -1.18
SCN1A-217ENST00000637988 CYB5RLQ6IPT4 315 aa7.65□□□□□ -1.18
SCN1A-217ENST00000637988 CECR2Q9BXF3 1484 aa7.65□□□□□ -1.18
SCN1A-217ENST00000637988 LTV1Q96GA3 475 aaPredicted RBP7.65□□□□□ -1.19
SCN1A-217ENST00000637988 PTMSP20962 102 aa7.64□□□□□ -1.19
SCN1A-217ENST00000637988 SYNE3Q6ZMZ3 975 aa7.64□□□□□ -1.19
SCN1A-217ENST00000637988 ROCK2O75116 1388 aaKnown RBP7.64□□□□□ -1.19
SCN1A-217ENST00000637988 CUX2O14529 1486 aa7.64□□□□□ -1.19
SCN1A-217ENST00000637988 ARHGAP35Q9NRY4 1499 aa7.64□□□□□ -1.19
SCN1A-217ENST00000637988 NEXNQ0ZGT2 675 aa7.64□□□□□ -1.19
SCN1A-217ENST00000637988 TSR1Q2NL82 804 aaKnown RBP7.64□□□□□ -1.19
SCN1A-217ENST00000637988 WDHD1O75717 1129 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-217ENST00000637988 TRIM6-TRIM34B2RNG4 842 aa7.63□□□□□ -1.19
SCN1A-217ENST00000637988 KIF3BO15066 747 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms