RNA–Protein interactions for RNA: ENST00000627317.1

PNKP-221, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 767 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-221ENST00000627317 POGZQ7Z3K3 1410 aa23.31■■□□□ 1.32
PNKP-221ENST00000627317 PREX2Q70Z35 1606 aa23.29■■□□□ 1.32
PNKP-221ENST00000627317 ARHGAP5Q13017 1502 aa23.28■■□□□ 1.32
PNKP-221ENST00000627317 SCAPERQ9BY12 1400 aa23.27■■□□□ 1.32
PNKP-221ENST00000627317 EFCAB2Q5VUJ9 269 aa23.26■■□□□ 1.31
PNKP-221ENST00000627317 CDC42BPBQ9Y5S2 1711 aa23.25■■□□□ 1.31
PNKP-221ENST00000627317 MAGI2Q86UL8 1455 aa23.24■■□□□ 1.31
PNKP-221ENST00000627317 YEATS2Q9ULM3 1422 aa23.22■■□□□ 1.31
PNKP-221ENST00000627317 CDC42BPAQ5VT25 1732 aa23.22■■□□□ 1.31
PNKP-221ENST00000627317 ZFYVE16Q7Z3T8 1539 aa23.21■■□□□ 1.31
PNKP-221ENST00000627317 KDM5CP41229 1560 aa23.21■■□□□ 1.31
PNKP-221ENST00000627317 ABCC1P33527 1531 aa23.2■■□□□ 1.3
PNKP-221ENST00000627317 GPATCH8Q9UKJ3 1502 aaKnown RBP23.2■■□□□ 1.3
PNKP-221ENST00000627317 EHBP1L1Q8N3D4 1523 aa23.18■■□□□ 1.3
PNKP-221ENST00000627317 ARHGEF12Q9NZN5 1544 aa23.18■■□□□ 1.3
PNKP-221ENST00000627317 ZNF518AQ6AHZ1 1483 aa23.18■■□□□ 1.3
PNKP-221ENST00000627317 SIGLEC1Q9BZZ2 1709 aa23.16■■□□□ 1.3
PNKP-221ENST00000627317 MTUS2Q5JR59 1369 aa23.16■■□□□ 1.3
PNKP-221ENST00000627317 ADAMTSL3P82987 1691 aa23.16■■□□□ 1.3
PNKP-221ENST00000627317 TIAM1Q13009 1591 aa23.13■■□□□ 1.29
PNKP-221ENST00000627317 SAMD9LQ8IVG5 1584 aa23.13■■□□□ 1.29
PNKP-221ENST00000627317 BCORL1Q5H9F3 1711 aa23.13■■□□□ 1.29
PNKP-221ENST00000627317 ITSN2Q9NZM3 1697 aa23.13■■□□□ 1.29
PNKP-221ENST00000627317 TRAPPC8Q9Y2L5 1435 aa23.12■■□□□ 1.29
PNKP-221ENST00000627317 APLP2Q06481 763 aa23.1■■□□□ 1.29
PNKP-221ENST00000627317 AFAP1Q8N556 730 aa23.1■■□□□ 1.29
PNKP-221ENST00000627317 HECW2Q9P2P5 1572 aa23.1■■□□□ 1.29
PNKP-221ENST00000627317 MLH3Q9UHC1 1453 aa23.09■■□□□ 1.29
PNKP-221ENST00000627317 CCNB3Q8WWL7 1395 aa23.08■■□□□ 1.29
PNKP-221ENST00000627317 MAP3K1Q13233 1512 aa23.08■■□□□ 1.28
PNKP-221ENST00000627317 ATP10AO60312 1499 aa23.07■■□□□ 1.28
PNKP-221ENST00000627317 C9orf84Q5VXU9 1444 aa23.07■■□□□ 1.28
PNKP-221ENST00000627317 DIP2CQ9Y2E4 1556 aa23.06■■□□□ 1.28
PNKP-221ENST00000627317 SYCP2Q9BX26 1530 aa23.06■■□□□ 1.28
PNKP-221ENST00000627317 KIAA1107Q9UPP5 1409 aa23.06■■□□□ 1.28
PNKP-221ENST00000627317 MADDQ8WXG6 1647 aa23.05■■□□□ 1.28
PNKP-221ENST00000627317 REREQ9P2R6 1566 aa23.04■■□□□ 1.28
PNKP-221ENST00000627317 PTPRMP28827 1452 aa23.04■■□□□ 1.28
PNKP-221ENST00000627317 NCOA2Q15596 1464 aa23.04■■□□□ 1.28
PNKP-221ENST00000627317 ABCA6Q8N139 1617 aa23.04■■□□□ 1.28
PNKP-221ENST00000627317 LRRC9Q6ZRR7 1453 aa23.03■■□□□ 1.28
PNKP-221ENST00000627317 PLEKHH2Q8IVE3 1493 aa23.02■■□□□ 1.28
PNKP-221ENST00000627317 ARID4BQ4LE39 1312 aaPredicted RBP23.02■■□□□ 1.28
PNKP-221ENST00000627317 CFDP1Q9UEE9 299 aaPredicted RBP23.01■■□□□ 1.27
PNKP-221ENST00000627317 SUPT6HQ7KZ85 1726 aaKnown RBP23■■□□□ 1.27
PNKP-221ENST00000627317 KIDINS220Q9ULH0 1771 aa22.99■■□□□ 1.27
PNKP-221ENST00000627317 MBD5Q9P267 1494 aa22.98■■□□□ 1.27
PNKP-221ENST00000627317 ZNF777Q9ULD5 760 aaPredicted RBP22.97■■□□□ 1.27
PNKP-221ENST00000627317 INO80Q9ULG1 1556 aaPredicted RBP22.96■■□□□ 1.27
PNKP-221ENST00000627317 ZNF644Q9H582 1327 aaPredicted RBP22.95■■□□□ 1.26
PNKP-221ENST00000627317 AGLP35573 1532 aa22.94■■□□□ 1.26
PNKP-221ENST00000627317 HNRNPMP52272 730 aaKnown RBP eCLIP22.94■■□□□ 1.26
PNKP-221ENST00000627317 KANK4Q5T7N3 995 aaPredicted RBP22.94■■□□□ 1.26
PNKP-221ENST00000627317 RIMS1Q86UR5 1692 aaKnown RBP22.93■■□□□ 1.26
PNKP-221ENST00000627317 ATP7AQ04656 1500 aa22.92■■□□□ 1.26
PNKP-221ENST00000627317 CAMSAP2Q08AD1 1489 aa22.9■■□□□ 1.26
PNKP-221ENST00000627317 SPAG9O60271 1321 aaKnown RBP22.89■■□□□ 1.26
PNKP-221ENST00000627317 PLXNC1O60486 1568 aa22.89■■□□□ 1.25
PNKP-221ENST00000627317 FER1L4A9Z1Z3 1794 aa22.88■■□□□ 1.25
PNKP-221ENST00000627317 MLECQ14165 292 aa22.85■■□□□ 1.25
PNKP-221ENST00000627317 CCDC141Q6ZP82 1450 aa22.84■■□□□ 1.25
PNKP-221ENST00000627317 MYT1LQ9UL68 1186 aa22.83■■□□□ 1.25
PNKP-221ENST00000627317 ARHGEF5Q12774 1597 aa22.83■■□□□ 1.25
PNKP-221ENST00000627317 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
PNKP-221ENST00000627317 MYOM3Q5VTT5 1437 aa22.82■■□□□ 1.24
PNKP-221ENST00000627317 LMTK3Q96Q04 1460 aa22.81■■□□□ 1.24
PNKP-221ENST00000627317 MIA2Q96PC5 1412 aa22.81■■□□□ 1.24
PNKP-221ENST00000627317 A2MP01023 1474 aa22.8■■□□□ 1.24
PNKP-221ENST00000627317 ADGBQ8N7X0 1667 aa22.77■■□□□ 1.24
PNKP-221ENST00000627317 PPARGC1BQ86YN6 1023 aaKnown RBP22.76■■□□□ 1.23
PNKP-221ENST00000627317 RSPH4AQ5TD94 716 aa22.73■■□□□ 1.23
PNKP-221ENST00000627317 MAST1Q9Y2H9 1570 aa22.72■■□□□ 1.23
PNKP-221ENST00000627317 CNTLNQ9NXG0 1405 aa22.71■■□□□ 1.23
PNKP-221ENST00000627317 DHX29Q7Z478 1369 aaKnown RBP22.7■■□□□ 1.22
PNKP-221ENST00000627317 C3P01024 1663 aa22.68■■□□□ 1.22
PNKP-221ENST00000627317 CEBPAP49715 358 aaPredicted RBP22.68■■□□□ 1.22
PNKP-221ENST00000627317 TCOF1Q13428 1488 aaKnown RBP22.67■■□□□ 1.22
PNKP-221ENST00000627317 FGD6Q6ZV73 1430 aa22.67■■□□□ 1.22
PNKP-221ENST00000627317 MROH2AA6NES4 1674 aa22.67■■□□□ 1.22
PNKP-221ENST00000627317 PTPN23Q9H3S7 1636 aa22.66■■□□□ 1.22
PNKP-221ENST00000627317 PLPPR3Q6T4P5 718 aa22.64■■□□□ 1.21
PNKP-221ENST00000627317 PREX1Q8TCU6 1659 aa22.64■■□□□ 1.21
PNKP-221ENST00000627317 SHANK2Q9UPX8 1470 aa22.63■■□□□ 1.21
PNKP-221ENST00000627317 ABCC5O15440 1437 aa22.62■■□□□ 1.21
PNKP-221ENST00000627317 CROCC2H7BZ55 1655 aa22.61■■□□□ 1.21
PNKP-221ENST00000627317 TSPY4P0CV99 314 aa22.6■■□□□ 1.21
PNKP-221ENST00000627317 TSPY10P0CW01 314 aa22.6■■□□□ 1.21
PNKP-221ENST00000627317 CLTCQ00610 1675 aaKnown RBP22.59■■□□□ 1.21
PNKP-221ENST00000627317 NPATQ14207 1427 aa22.59■■□□□ 1.21
PNKP-221ENST00000627317 FAM135AQ9P2D6 1515 aa22.59■■□□□ 1.21
PNKP-221ENST00000627317 PPP6R1Q9UPN7 881 aa22.59■■□□□ 1.21
PNKP-221ENST00000627317 ZMYM3Q14202 1370 aa22.59■■□□□ 1.21
PNKP-221ENST00000627317 DNMT1P26358 1616 aaKnown RBP22.58■■□□□ 1.21
PNKP-221ENST00000627317 DAPK1P53355 1430 aa22.57■■□□□ 1.2
PNKP-221ENST00000627317 HSPA2P54652 639 aa22.57■■□□□ 1.2
PNKP-221ENST00000627317 ESF1Q9H501 851 aaKnown RBP22.57■■□□□ 1.2
PNKP-221ENST00000627317 GGT6Q6P531 493 aa22.56■■□□□ 1.2
PNKP-221ENST00000627317 RNF17Q9BXT8 1623 aaKnown RBP22.56■■□□□ 1.2
PNKP-221ENST00000627317 UHRF1BP1Q6BDS2 1440 aa22.56■■□□□ 1.2
PNKP-221ENST00000627317 EIF2AK4Q9P2K8 1649 aaKnown RBP22.54■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms