RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 PHLDB1Q86UU1 1377 aa29.78■■■□□ 2.36
SQSTM1-216ENST00000626660 ARHGAP5Q13017 1502 aa29.78■■■□□ 2.36
SQSTM1-216ENST00000626660 EFCAB2Q5VUJ9 269 aa29.77■■■□□ 2.36
SQSTM1-216ENST00000626660 KDM6BO15054 1643 aa29.77■■■□□ 2.36
SQSTM1-216ENST00000626660 CDC42BPBQ9Y5S2 1711 aa29.76■■■□□ 2.35
SQSTM1-216ENST00000626660 ITSN2Q9NZM3 1697 aa29.75■■■□□ 2.35
SQSTM1-216ENST00000626660 GPATCH8Q9UKJ3 1502 aaKnown RBP29.74■■■□□ 2.35
SQSTM1-216ENST00000626660 AKNAQ7Z591 1439 aa29.71■■■□□ 2.35
SQSTM1-216ENST00000626660 CFDP1Q9UEE9 299 aaPredicted RBP29.68■■■□□ 2.34
SQSTM1-216ENST00000626660 ADGRL1O94910 1474 aa29.65■■■□□ 2.34
SQSTM1-216ENST00000626660 ZNF777Q9ULD5 760 aaPredicted RBP29.63■■■□□ 2.33
SQSTM1-216ENST00000626660 COL17A1Q9UMD9 1497 aaPredicted RBP29.62■■■□□ 2.33
SQSTM1-216ENST00000626660 DENND4BO75064 1496 aaPredicted RBP29.61■■■□□ 2.33
SQSTM1-216ENST00000626660 MYOM3Q5VTT5 1437 aa29.6■■■□□ 2.33
SQSTM1-216ENST00000626660 SCAPERQ9BY12 1400 aa29.6■■■□□ 2.33
SQSTM1-216ENST00000626660 SAMD9LQ8IVG5 1584 aa29.58■■■□□ 2.33
SQSTM1-216ENST00000626660 PLEKHH2Q8IVE3 1493 aa29.57■■■□□ 2.32
SQSTM1-216ENST00000626660 ABCC1P33527 1531 aa29.56■■■□□ 2.32
SQSTM1-216ENST00000626660 KDM4FA0A1W2PPD8 638 aa29.56■■■□□ 2.32
SQSTM1-216ENST00000626660 PPARGC1BQ86YN6 1023 aaKnown RBP29.56■■■□□ 2.32
SQSTM1-216ENST00000626660 RAPGEF3O95398 923 aa29.54■■■□□ 2.32
SQSTM1-216ENST00000626660 RICTORQ6R327 1708 aa29.54■■■□□ 2.32
SQSTM1-216ENST00000626660 MIA2Q96PC5 1412 aa29.53■■■□□ 2.32
SQSTM1-216ENST00000626660 POGZQ7Z3K3 1410 aa29.52■■■□□ 2.32
SQSTM1-216ENST00000626660 KIAA1107Q9UPP5 1409 aa29.5■■■□□ 2.31
SQSTM1-216ENST00000626660 FRMPD1Q5SYB0 1578 aa29.5■■■□□ 2.31
SQSTM1-216ENST00000626660 SYCP2Q9BX26 1530 aa29.5■■■□□ 2.31
SQSTM1-216ENST00000626660 CAMSAP2Q08AD1 1489 aa29.49■■■□□ 2.31
SQSTM1-216ENST00000626660 ZNF518AQ6AHZ1 1483 aa29.48■■■□□ 2.31
SQSTM1-216ENST00000626660 ZNF644Q9H582 1327 aaPredicted RBP29.48■■■□□ 2.31
SQSTM1-216ENST00000626660 ARHGEF12Q9NZN5 1544 aa29.47■■■□□ 2.31
SQSTM1-216ENST00000626660 FGD6Q6ZV73 1430 aa29.46■■■□□ 2.31
SQSTM1-216ENST00000626660 HNRNPMP52272 730 aaKnown RBP eCLIP29.45■■■□□ 2.312e-7■■■□□ 16
SQSTM1-216ENST00000626660 PTPN23Q9H3S7 1636 aa29.43■■■□□ 2.3
SQSTM1-216ENST00000626660 ZMYM4Q5VZL5 1548 aa29.43■■■□□ 2.3
SQSTM1-216ENST00000626660 TRAPPC8Q9Y2L5 1435 aa29.43■■■□□ 2.3
SQSTM1-216ENST00000626660 AFAP1Q8N556 730 aa29.41■■■□□ 2.3
SQSTM1-216ENST00000626660 KDM5CP41229 1560 aa29.4■■■□□ 2.3
SQSTM1-216ENST00000626660 MAGI2Q86UL8 1455 aa29.37■■■□□ 2.29
SQSTM1-216ENST00000626660 MBD5Q9P267 1494 aa29.37■■■□□ 2.29
SQSTM1-216ENST00000626660 TCOF1Q13428 1488 aaKnown RBP29.36■■■□□ 2.29
SQSTM1-216ENST00000626660 RSPH4AQ5TD94 716 aa29.36■■■□□ 2.29
SQSTM1-216ENST00000626660 MYT1LQ9UL68 1186 aa29.36■■■□□ 2.29
SQSTM1-216ENST00000626660 ARHGEF5Q12774 1597 aa29.35■■■□□ 2.29
SQSTM1-216ENST00000626660 HECW2Q9P2P5 1572 aa29.35■■■□□ 2.29
SQSTM1-216ENST00000626660 CCDC141Q6ZP82 1450 aa29.35■■■□□ 2.29
SQSTM1-216ENST00000626660 ZFYVE16Q7Z3T8 1539 aa29.34■■■□□ 2.29
SQSTM1-216ENST00000626660 ARHGEF40Q8TER5 1519 aa29.32■■■□□ 2.28
SQSTM1-216ENST00000626660 SPAG9O60271 1321 aaKnown RBP29.32■■■□□ 2.28
SQSTM1-216ENST00000626660 MLH3Q9UHC1 1453 aa29.31■■■□□ 2.28
SQSTM1-216ENST00000626660 FAM50AQ14320 339 aaKnown RBP29.31■■■□□ 2.28
SQSTM1-216ENST00000626660 YEATS2Q9ULM3 1422 aa29.27■■■□□ 2.28
SQSTM1-216ENST00000626660 TSPY4P0CV99 314 aa29.26■■■□□ 2.27
SQSTM1-216ENST00000626660 TSPY10P0CW01 314 aa29.26■■■□□ 2.27
SQSTM1-216ENST00000626660 KIDINS220Q9ULH0 1771 aa29.26■■■□□ 2.27
SQSTM1-216ENST00000626660 ATP7AQ04656 1500 aa29.25■■■□□ 2.27
SQSTM1-216ENST00000626660 INO80Q9ULG1 1556 aaPredicted RBP29.25■■■□□ 2.27
SQSTM1-216ENST00000626660 DNMT1P26358 1616 aaKnown RBP29.24■■■□□ 2.27
SQSTM1-216ENST00000626660 RTEL1-TNFRSF6BF6WH68 1400 aa29.22■■■□□ 2.27
SQSTM1-216ENST00000626660 ATP10AO60312 1499 aa29.21■■■□□ 2.27
SQSTM1-216ENST00000626660 DIP2CQ9Y2E4 1556 aa29.21■■■□□ 2.27
SQSTM1-216ENST00000626660 CROCC2H7BZ55 1655 aa29.21■■■□□ 2.27
SQSTM1-216ENST00000626660 DAPK1P53355 1430 aa29.2■■■□□ 2.27
SQSTM1-216ENST00000626660 ABCA6Q8N139 1617 aa29.2■■■□□ 2.27
SQSTM1-216ENST00000626660 RRBP1Q9P2E9 1410 aaKnown RBP29.2■■■□□ 2.26
SQSTM1-216ENST00000626660 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.19■■■□□ 2.269e-8■□□□□ 10.7
SQSTM1-216ENST00000626660 ABCC5O15440 1437 aa29.19■■■□□ 2.26
SQSTM1-216ENST00000626660 MAST1Q9Y2H9 1570 aa29.18■■■□□ 2.26
SQSTM1-216ENST00000626660 ILDR1Q86SU0 546 aaPredicted RBP29.18■■■□□ 2.26
SQSTM1-216ENST00000626660 C9orf84Q5VXU9 1444 aa29.18■■■□□ 2.26
SQSTM1-216ENST00000626660 SHANK2Q9UPX8 1470 aa29.17■■■□□ 2.26
SQSTM1-216ENST00000626660 ADGBQ8N7X0 1667 aa29.13■■■□□ 2.25
SQSTM1-216ENST00000626660 REREQ9P2R6 1566 aa29.12■■■□□ 2.25
SQSTM1-216ENST00000626660 ARID4BQ4LE39 1312 aaPredicted RBP29.12■■■□□ 2.25
SQSTM1-216ENST00000626660 A2MP01023 1474 aa29.08■■■□□ 2.25
SQSTM1-216ENST00000626660 PLXNC1O60486 1568 aa29.08■■■□□ 2.25
SQSTM1-216ENST00000626660 CHIC2Q9UKJ5 165 aa29.07■■■□□ 2.24
SQSTM1-216ENST00000626660 ITGAEP38570 1179 aa29.05■■■□□ 2.24
SQSTM1-216ENST00000626660 ANKRD30AQ9BXX3 1397 aa29.04■■■□□ 2.24
SQSTM1-216ENST00000626660 SIGLEC1Q9BZZ2 1709 aa29.03■■■□□ 2.24
SQSTM1-216ENST00000626660 AGLP35573 1532 aa29.02■■■□□ 2.24
SQSTM1-216ENST00000626660 DHX29Q7Z478 1369 aaKnown RBP29.01■■■□□ 2.24
SQSTM1-216ENST00000626660 ADGRL2O95490 1459 aa29.01■■■□□ 2.23
SQSTM1-216ENST00000626660 KIF15Q9NS87 1388 aa29■■■□□ 2.23
SQSTM1-216ENST00000626660 PTPRKQ15262 1439 aa28.99■■■□□ 2.23
SQSTM1-216ENST00000626660 RRP7BPQ9NSQ0 103 aa28.98■■■□□ 2.23
SQSTM1-216ENST00000626660 DUOX2Q9NRD8 1548 aa28.98■■■□□ 2.23
SQSTM1-216ENST00000626660 BCORL1Q5H9F3 1711 aa28.97■■■□□ 2.23
SQSTM1-216ENST00000626660 NCOA1Q15788 1441 aa28.97■■■□□ 2.23
SQSTM1-216ENST00000626660 ROCK1Q13464 1354 aa28.94■■■□□ 2.22
SQSTM1-216ENST00000626660 MLECQ14165 292 aa28.94■■■□□ 2.22
SQSTM1-216ENST00000626660 EIF2AK4Q9P2K8 1649 aaKnown RBP28.9■■■□□ 2.22
SQSTM1-216ENST00000626660 ERBINQ96RT1 1412 aa28.89■■■□□ 2.22
SQSTM1-216ENST00000626660 KIF3BO15066 747 aa28.89■■■□□ 2.22
SQSTM1-216ENST00000626660 ADAMTSL3P82987 1691 aa28.89■■■□□ 2.21
SQSTM1-216ENST00000626660 FER1L4A9Z1Z3 1794 aa28.85■■■□□ 2.21
SQSTM1-216ENST00000626660 GGT6Q6P531 493 aa28.84■■■□□ 2.21
SQSTM1-216ENST00000626660 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
SQSTM1-216ENST00000626660 ESF1Q9H501 851 aaKnown RBP28.82■■■□□ 2.2
SQSTM1-216ENST00000626660 ANKRD50Q9ULJ7 1429 aa28.82■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms