RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 TIAM1Q13009 1591 aa17.35■□□□□ 0.37
LINC00538-201ENST00000626109 MAP3K1Q13233 1512 aa17.34■□□□□ 0.37
LINC00538-201ENST00000626109 CFAP43Q8NDM7 1665 aa17.34■□□□□ 0.37
LINC00538-201ENST00000626109 CDK11AQ9UQ88 783 aaPredicted RBP17.33■□□□□ 0.37
LINC00538-201ENST00000626109 PLEKHD1A6NEE1 506 aa17.3■□□□□ 0.36
LINC00538-201ENST00000626109 MAPKBP1O60336 1514 aa17.29■□□□□ 0.36
LINC00538-201ENST00000626109 ASXL2Q76L83 1435 aa17.29■□□□□ 0.36
LINC00538-201ENST00000626109 MTUS2Q5JR59 1369 aa17.28■□□□□ 0.36
LINC00538-201ENST00000626109 WDR7Q9Y4E6 1490 aa17.27■□□□□ 0.36
LINC00538-201ENST00000626109 TROQ12816 1431 aaPredicted RBP17.26■□□□□ 0.35
LINC00538-201ENST00000626109 LRRC9Q6ZRR7 1453 aa17.26■□□□□ 0.35
LINC00538-201ENST00000626109 EHBP1L1Q8N3D4 1523 aa17.26■□□□□ 0.35
LINC00538-201ENST00000626109 MAGI3Q5TCQ9 1506 aa17.25■□□□□ 0.35
LINC00538-201ENST00000626109 KANK4Q5T7N3 995 aaPredicted RBP17.23■□□□□ 0.35
LINC00538-201ENST00000626109 KIF14Q15058 1648 aa17.21■□□□□ 0.35
LINC00538-201ENST00000626109 KCNH8Q96L42 1107 aa17.2■□□□□ 0.34
LINC00538-201ENST00000626109 NPM3O75607 178 aaKnown RBP17.19■□□□□ 0.34
LINC00538-201ENST00000626109 SUPT6HQ7KZ85 1726 aaKnown RBP17.18■□□□□ 0.34
LINC00538-201ENST00000626109 ABCC10Q5T3U5 1492 aa17.16■□□□□ 0.34
LINC00538-201ENST00000626109 NCOA2Q15596 1464 aa17.15■□□□□ 0.34
LINC00538-201ENST00000626109 DIP2BQ9P265 1576 aa17.15■□□□□ 0.34
LINC00538-201ENST00000626109 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.13■□□□□ 0.33
LINC00538-201ENST00000626109 GLI2P10070 1586 aa17.13■□□□□ 0.33
LINC00538-201ENST00000626109 ABCA9Q8IUA7 1624 aa17.12■□□□□ 0.33
LINC00538-201ENST00000626109 FAM69CQ0P6D2 419 aa17.11■□□□□ 0.33
LINC00538-201ENST00000626109 TTC37Q6PGP7 1564 aa17.11■□□□□ 0.33
LINC00538-201ENST00000626109 CCNB3Q8WWL7 1395 aa17.1■□□□□ 0.33
LINC00538-201ENST00000626109 BCL11AQ9H165 835 aa17.09■□□□□ 0.33
LINC00538-201ENST00000626109 PDIA4P13667 645 aaKnown RBP17.09■□□□□ 0.33
LINC00538-201ENST00000626109 TRHP20396 242 aaPredicted RBP17.07■□□□□ 0.32
LINC00538-201ENST00000626109 CD109Q6YHK3 1445 aa17.07■□□□□ 0.32
LINC00538-201ENST00000626109 KIF13AQ9H1H9 1805 aa17.07■□□□□ 0.32
LINC00538-201ENST00000626109 MAP3K4Q9Y6R4 1608 aa17.06■□□□□ 0.32
LINC00538-201ENST00000626109 ITSN2Q9NZM3 1697 aa17.06■□□□□ 0.32
LINC00538-201ENST00000626109 MYO5CQ9NQX4 1742 aa17.06■□□□□ 0.32
LINC00538-201ENST00000626109 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
LINC00538-201ENST00000626109 PHLDB1Q86UU1 1377 aa17.06■□□□□ 0.32
LINC00538-201ENST00000626109 MYOM3Q5VTT5 1437 aa17.05■□□□□ 0.32
LINC00538-201ENST00000626109 CDC42BPAQ5VT25 1732 aa17.04■□□□□ 0.32
LINC00538-201ENST00000626109 PREX2Q70Z35 1606 aa17.04■□□□□ 0.32
LINC00538-201ENST00000626109 PLCH2O75038 1416 aa17.04■□□□□ 0.32
LINC00538-201ENST00000626109 CHMP4AQ9BY43 222 aa17.03■□□□□ 0.32
LINC00538-201ENST00000626109 ARAP3Q8WWN8 1544 aa17.03■□□□□ 0.32
LINC00538-201ENST00000626109 ARHGAP5Q13017 1502 aa17.02■□□□□ 0.32
LINC00538-201ENST00000626109 CFDP1Q9UEE9 299 aaPredicted RBP17.02■□□□□ 0.31
LINC00538-201ENST00000626109 MIA2Q96PC5 1412 aa17■□□□□ 0.31
LINC00538-201ENST00000626109 CDC42BPBQ9Y5S2 1711 aa17■□□□□ 0.31
LINC00538-201ENST00000626109 FGD6Q6ZV73 1430 aa16.99■□□□□ 0.31
LINC00538-201ENST00000626109 EFCAB2Q5VUJ9 269 aa16.99■□□□□ 0.31
LINC00538-201ENST00000626109 FANCAO15360 1455 aa16.98■□□□□ 0.31
LINC00538-201ENST00000626109 TEX14Q8IWB6 1497 aa16.98■□□□□ 0.31
LINC00538-201ENST00000626109 CCER1Q8TC90 406 aaPredicted RBP16.98■□□□□ 0.31
LINC00538-201ENST00000626109 CFAP74Q9C0B2 1584 aa16.98■□□□□ 0.31
LINC00538-201ENST00000626109 TSPOAP1O95153 1857 aa16.97■□□□□ 0.31
LINC00538-201ENST00000626109 ZNF777Q9ULD5 760 aaPredicted RBP16.96■□□□□ 0.31
LINC00538-201ENST00000626109 PPRC1Q5VV67 1664 aaKnown RBP16.95■□□□□ 0.3
LINC00538-201ENST00000626109 PPP6R1Q9UPN7 881 aa16.95■□□□□ 0.3
LINC00538-201ENST00000626109 NEO1Q92859 1461 aa16.95■□□□□ 0.3
LINC00538-201ENST00000626109 PTPN23Q9H3S7 1636 aa16.95■□□□□ 0.3
LINC00538-201ENST00000626109 RRBP1Q9P2E9 1410 aaKnown RBP16.94■□□□□ 0.3
LINC00538-201ENST00000626109 CAMSAP2Q08AD1 1489 aa16.94■□□□□ 0.3
LINC00538-201ENST00000626109 SAMD9LQ8IVG5 1584 aa16.93■□□□□ 0.3
LINC00538-201ENST00000626109 PLEKHH2Q8IVE3 1493 aa16.93■□□□□ 0.3
LINC00538-201ENST00000626109 CDK11BP21127 795 aaKnown RBP16.93■□□□□ 0.3
LINC00538-201ENST00000626109 TCOF1Q13428 1488 aaKnown RBP16.92■□□□□ 0.3
LINC00538-201ENST00000626109 AKNAQ7Z591 1439 aa16.92■□□□□ 0.3
LINC00538-201ENST00000626109 FAM50AQ14320 339 aaKnown RBP16.91■□□□□ 0.3
LINC00538-201ENST00000626109 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
LINC00538-201ENST00000626109 ADGRL1O94910 1474 aa16.91■□□□□ 0.3
LINC00538-201ENST00000626109 ABCC1P33527 1531 aa16.9■□□□□ 0.3
LINC00538-201ENST00000626109 KIAA1107Q9UPP5 1409 aa16.88■□□□□ 0.29
LINC00538-201ENST00000626109 SYCP2Q9BX26 1530 aa16.88■□□□□ 0.29
LINC00538-201ENST00000626109 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.88■□□□□ 0.29
LINC00538-201ENST00000626109 SAMD1Q6SPF0 538 aaPredicted RBP16.88■□□□□ 0.29
LINC00538-201ENST00000626109 SCAPERQ9BY12 1400 aa16.87■□□□□ 0.29
LINC00538-201ENST00000626109 UBE2Q2Q8WVN8 375 aa16.86■□□□□ 0.29
LINC00538-201ENST00000626109 HNRNPMP52272 730 aaKnown RBP eCLIP16.84■□□□□ 0.29
LINC00538-201ENST00000626109 ARHGEF12Q9NZN5 1544 aa16.84■□□□□ 0.29
LINC00538-201ENST00000626109 DENND4BO75064 1496 aaPredicted RBP16.84■□□□□ 0.29
LINC00538-201ENST00000626109 IGSF3O75054 1194 aa16.84■□□□□ 0.29
LINC00538-201ENST00000626109 NBR1Q14596 966 aa16.84■□□□□ 0.29
LINC00538-201ENST00000626109 ARHGEF5Q12774 1597 aa16.84■□□□□ 0.29
LINC00538-201ENST00000626109 MBD5Q9P267 1494 aa16.83■□□□□ 0.29
LINC00538-201ENST00000626109 RSPH4AQ5TD94 716 aa16.83■□□□□ 0.28
LINC00538-201ENST00000626109 CCDC141Q6ZP82 1450 aa16.83■□□□□ 0.28
LINC00538-201ENST00000626109 CNKSR2Q8WXI2 1034 aa16.82■□□□□ 0.28
LINC00538-201ENST00000626109 DNMT1P26358 1616 aaKnown RBP16.82■□□□□ 0.28
LINC00538-201ENST00000626109 POGZQ7Z3K3 1410 aa16.82■□□□□ 0.28
LINC00538-201ENST00000626109 TRAPPC8Q9Y2L5 1435 aa16.81■□□□□ 0.28
LINC00538-201ENST00000626109 ZNF518AQ6AHZ1 1483 aa16.81■□□□□ 0.28
LINC00538-201ENST00000626109 DAPK1P53355 1430 aa16.81■□□□□ 0.28
LINC00538-201ENST00000626109 ABCC5O15440 1437 aa16.79■□□□□ 0.28
LINC00538-201ENST00000626109 ITGAEP38570 1179 aa16.79■□□□□ 0.28
LINC00538-201ENST00000626109 KDM6BO15054 1643 aa16.79■□□□□ 0.28
LINC00538-201ENST00000626109 RAPGEF3O95398 923 aa16.78■□□□□ 0.28
LINC00538-201ENST00000626109 TSPY4P0CV99 314 aa16.78■□□□□ 0.28
LINC00538-201ENST00000626109 TSPY10P0CW01 314 aa16.78■□□□□ 0.28
LINC00538-201ENST00000626109 AFAP1Q8N556 730 aa16.78■□□□□ 0.28
LINC00538-201ENST00000626109 CROCC2H7BZ55 1655 aa16.77■□□□□ 0.28
LINC00538-201ENST00000626109 RICTORQ6R327 1708 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms