RNA–Protein interactions for RNA: ENST00000626000.1

SNRPA1-216, Transcript of small nuclear ribonucleoprotein polypeptide A', humanhuman

TSL 5 BASIC

Gene SNRPA1, Length 539 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1-216ENST00000626000 APLP2Q06481 763 aa22.06■■□□□ 1.12
SNRPA1-216ENST00000626000 ADGRL1O94910 1474 aa22.06■■□□□ 1.12
SNRPA1-216ENST00000626000 CDC42BPAQ5VT25 1732 aa22.04■■□□□ 1.12
SNRPA1-216ENST00000626000 SUPT6HQ7KZ85 1726 aaKnown RBP22.04■■□□□ 1.12
SNRPA1-216ENST00000626000 ITSN2Q9NZM3 1697 aa22.03■■□□□ 1.12
SNRPA1-216ENST00000626000 CDC42BPBQ9Y5S2 1711 aa22.03■■□□□ 1.12
SNRPA1-216ENST00000626000 CCNB3Q8WWL7 1395 aa22.02■■□□□ 1.12
SNRPA1-216ENST00000626000 RICTORQ6R327 1708 aa22.01■■□□□ 1.11
SNRPA1-216ENST00000626000 LRRC9Q6ZRR7 1453 aa22.01■■□□□ 1.11
SNRPA1-216ENST00000626000 ZMYM4Q5VZL5 1548 aa22■■□□□ 1.11
SNRPA1-216ENST00000626000 SCAPERQ9BY12 1400 aa21.99■■□□□ 1.11
SNRPA1-216ENST00000626000 MAGI2Q86UL8 1455 aa21.99■■□□□ 1.11
SNRPA1-216ENST00000626000 PLEKHH2Q8IVE3 1493 aa21.99■■□□□ 1.11
SNRPA1-216ENST00000626000 GPATCH8Q9UKJ3 1502 aaKnown RBP21.99■■□□□ 1.11
SNRPA1-216ENST00000626000 POGZQ7Z3K3 1410 aa21.98■■□□□ 1.11
SNRPA1-216ENST00000626000 ZNF518AQ6AHZ1 1483 aa21.98■■□□□ 1.11
SNRPA1-216ENST00000626000 FRMPD1Q5SYB0 1578 aa21.98■■□□□ 1.11
SNRPA1-216ENST00000626000 RAPGEF3O95398 923 aa21.95■■□□□ 1.1
SNRPA1-216ENST00000626000 NCOA2Q15596 1464 aa21.95■■□□□ 1.1
SNRPA1-216ENST00000626000 ABCC1P33527 1531 aa21.95■■□□□ 1.1
SNRPA1-216ENST00000626000 CFDP1Q9UEE9 299 aaPredicted RBP21.94■■□□□ 1.1
SNRPA1-216ENST00000626000 KIAA1107Q9UPP5 1409 aa21.92■■□□□ 1.1
SNRPA1-216ENST00000626000 ARHGEF40Q8TER5 1519 aa21.91■■□□□ 1.1
SNRPA1-216ENST00000626000 KDM5CP41229 1560 aa21.9■■□□□ 1.1
SNRPA1-216ENST00000626000 ZFYVE16Q7Z3T8 1539 aa21.89■■□□□ 1.09
SNRPA1-216ENST00000626000 SAMD9LQ8IVG5 1584 aa21.88■■□□□ 1.09
SNRPA1-216ENST00000626000 HECW2Q9P2P5 1572 aa21.86■■□□□ 1.09
SNRPA1-216ENST00000626000 ZNF777Q9ULD5 760 aaPredicted RBP21.85■■□□□ 1.09
SNRPA1-216ENST00000626000 MLH3Q9UHC1 1453 aa21.84■■□□□ 1.09
SNRPA1-216ENST00000626000 SYCP2Q9BX26 1530 aa21.84■■□□□ 1.09
SNRPA1-216ENST00000626000 MIA2Q96PC5 1412 aa21.83■■□□□ 1.09
SNRPA1-216ENST00000626000 KANK4Q5T7N3 995 aaPredicted RBP21.82■■□□□ 1.08
SNRPA1-216ENST00000626000 RSPH4AQ5TD94 716 aa21.81■■□□□ 1.08
SNRPA1-216ENST00000626000 MYOM3Q5VTT5 1437 aa21.8■■□□□ 1.08
SNRPA1-216ENST00000626000 ARHGEF12Q9NZN5 1544 aa21.8■■□□□ 1.08
SNRPA1-216ENST00000626000 TRAPPC8Q9Y2L5 1435 aa21.8■■□□□ 1.08
SNRPA1-216ENST00000626000 AFAP1Q8N556 730 aa21.79■■□□□ 1.08
SNRPA1-216ENST00000626000 ATP10AO60312 1499 aa21.78■■□□□ 1.08
SNRPA1-216ENST00000626000 C9orf84Q5VXU9 1444 aa21.78■■□□□ 1.08
SNRPA1-216ENST00000626000 CAMSAP2Q08AD1 1489 aa21.77■■□□□ 1.08
SNRPA1-216ENST00000626000 MYT1LQ9UL68 1186 aa21.77■■□□□ 1.08
SNRPA1-216ENST00000626000 YEATS2Q9ULM3 1422 aa21.77■■□□□ 1.08
SNRPA1-216ENST00000626000 REREQ9P2R6 1566 aa21.77■■□□□ 1.08
SNRPA1-216ENST00000626000 SPAG9O60271 1321 aaKnown RBP21.75■■□□□ 1.07
SNRPA1-216ENST00000626000 ARHGEF5Q12774 1597 aa21.74■■□□□ 1.07
SNRPA1-216ENST00000626000 CCDC141Q6ZP82 1450 aa21.73■■□□□ 1.07
SNRPA1-216ENST00000626000 MBD5Q9P267 1494 aa21.73■■□□□ 1.07
SNRPA1-216ENST00000626000 HNRNPMP52272 730 aaKnown RBP eCLIP21.73■■□□□ 1.07
SNRPA1-216ENST00000626000 SENP3Q9H4L4 574 aaPredicted RBP21.73■■□□□ 1.07
SNRPA1-216ENST00000626000 ARID4BQ4LE39 1312 aaPredicted RBP21.73■■□□□ 1.07
SNRPA1-216ENST00000626000 ATP7AQ04656 1500 aa21.72■■□□□ 1.07
SNRPA1-216ENST00000626000 INO80Q9ULG1 1556 aaPredicted RBP21.72■■□□□ 1.07
SNRPA1-216ENST00000626000 DIP2CQ9Y2E4 1556 aa21.72■■□□□ 1.07
SNRPA1-216ENST00000626000 RTEL1-TNFRSF6BF6WH68 1400 aa21.72■■□□□ 1.07
SNRPA1-216ENST00000626000 KIDINS220Q9ULH0 1771 aa21.71■■□□□ 1.07
SNRPA1-216ENST00000626000 ABCA6Q8N139 1617 aa21.7■■□□□ 1.06
SNRPA1-216ENST00000626000 KDM4FA0A1W2PPD8 638 aa21.7■■□□□ 1.06
SNRPA1-216ENST00000626000 BCORL1Q5H9F3 1711 aa21.69■■□□□ 1.06
SNRPA1-216ENST00000626000 ZNF644Q9H582 1327 aaPredicted RBP21.69■■□□□ 1.06
SNRPA1-216ENST00000626000 AGLP35573 1532 aa21.67■■□□□ 1.06
SNRPA1-216ENST00000626000 FGD6Q6ZV73 1430 aa21.67■■□□□ 1.06
SNRPA1-216ENST00000626000 ADAMTSL3P82987 1691 aa21.66■■□□□ 1.06
SNRPA1-216ENST00000626000 TSPY4P0CV99 314 aa21.66■■□□□ 1.06
SNRPA1-216ENST00000626000 TSPY10P0CW01 314 aa21.66■■□□□ 1.06
SNRPA1-216ENST00000626000 ADGBQ8N7X0 1667 aa21.66■■□□□ 1.06
SNRPA1-216ENST00000626000 PTPN23Q9H3S7 1636 aa21.66■■□□□ 1.06
SNRPA1-216ENST00000626000 TCOF1Q13428 1488 aaKnown RBP21.64■■□□□ 1.05
SNRPA1-216ENST00000626000 MAST1Q9Y2H9 1570 aa21.62■■□□□ 1.05
SNRPA1-216ENST00000626000 A2MP01023 1474 aa21.6■■□□□ 1.05
SNRPA1-216ENST00000626000 SHANK2Q9UPX8 1470 aa21.59■■□□□ 1.05
SNRPA1-216ENST00000626000 PLXNC1O60486 1568 aa21.59■■□□□ 1.05
SNRPA1-216ENST00000626000 SIGLEC1Q9BZZ2 1709 aa21.58■■□□□ 1.04
SNRPA1-216ENST00000626000 MADDQ8WXG6 1647 aa21.57■■□□□ 1.04
SNRPA1-216ENST00000626000 DNMT1P26358 1616 aaKnown RBP21.56■■□□□ 1.04
SNRPA1-216ENST00000626000 CROCC2H7BZ55 1655 aa21.56■■□□□ 1.04
SNRPA1-216ENST00000626000 FER1L4A9Z1Z3 1794 aa21.56■■□□□ 1.04
SNRPA1-216ENST00000626000 PHF23Q9BUL5 403 aaPredicted RBP21.54■■□□□ 1.04
SNRPA1-216ENST00000626000 PTPRMP28827 1452 aa21.53■■□□□ 1.04
SNRPA1-216ENST00000626000 DHX29Q7Z478 1369 aaKnown RBP21.53■■□□□ 1.04
SNRPA1-216ENST00000626000 DAPK1P53355 1430 aa21.52■■□□□ 1.04
SNRPA1-216ENST00000626000 CNTLNQ9NXG0 1405 aa21.52■■□□□ 1.04
SNRPA1-216ENST00000626000 RIMS1Q86UR5 1692 aaKnown RBP21.51■■□□□ 1.03
SNRPA1-216ENST00000626000 ESF1Q9H501 851 aaKnown RBP21.51■■□□□ 1.03
SNRPA1-216ENST00000626000 PPP6R1Q9UPN7 881 aa21.51■■□□□ 1.03
SNRPA1-216ENST00000626000 FAM135AQ9P2D6 1515 aa21.5■■□□□ 1.03
SNRPA1-216ENST00000626000 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.5■■□□□ 1.03
SNRPA1-216ENST00000626000 ABCC5O15440 1437 aa21.5■■□□□ 1.03
SNRPA1-216ENST00000626000 MLECQ14165 292 aa21.5■■□□□ 1.03
SNRPA1-216ENST00000626000 FAM50AQ14320 339 aaKnown RBP21.47■■□□□ 1.03
SNRPA1-216ENST00000626000 EIF2AK4Q9P2K8 1649 aaKnown RBP21.47■■□□□ 1.03
SNRPA1-216ENST00000626000 DUOX2Q9NRD8 1548 aa21.46■■□□□ 1.03
SNRPA1-216ENST00000626000 ANKRD30AQ9BXX3 1397 aa21.46■■□□□ 1.03
SNRPA1-216ENST00000626000 MROH2AA6NES4 1674 aa21.44■■□□□ 1.02
SNRPA1-216ENST00000626000 ADGRL2O95490 1459 aa21.42■■□□□ 1.02
SNRPA1-216ENST00000626000 ERBINQ96RT1 1412 aa21.42■■□□□ 1.02
SNRPA1-216ENST00000626000 KIF15Q9NS87 1388 aa21.42■■□□□ 1.02
SNRPA1-216ENST00000626000 RRBP1Q9P2E9 1410 aaKnown RBP21.39■■□□□ 1.02
SNRPA1-216ENST00000626000 KIF3BO15066 747 aa21.39■■□□□ 1.01
SNRPA1-216ENST00000626000 RNF17Q9BXT8 1623 aaKnown RBP21.38■■□□□ 1.01
SNRPA1-216ENST00000626000 NCOA1Q15788 1441 aa21.38■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms