RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 KLHL34Q8N239 644 aa11□□□□□ -0.65
TCF4-249ENST00000625716 SYNJ2O15056 1496 aa11□□□□□ -0.65
TCF4-249ENST00000625716 PYGBP11216 843 aa10.99□□□□□ -0.65
TCF4-249ENST00000625716 IFNLR1Q8IU57 520 aaPredicted RBP10.99□□□□□ -0.65
TCF4-249ENST00000625716 ABCA5Q8WWZ7 1642 aa10.98□□□□□ -0.65
TCF4-249ENST00000625716 PBRM1Q86U86 1689 aa10.97□□□□□ -0.65
TCF4-249ENST00000625716 ARHGEF11O15085 1522 aa10.95□□□□□ -0.66
TCF4-249ENST00000625716 COLQQ9Y215 455 aaPredicted RBP10.95□□□□□ -0.66
TCF4-249ENST00000625716 RIMBP3CA6NJZ7 1639 aa10.95□□□□□ -0.66
TCF4-249ENST00000625716 RIMBP3BA6NNM3 1639 aa10.95□□□□□ -0.66
TCF4-249ENST00000625716 RIMBP3Q9UFD9 1639 aa10.95□□□□□ -0.66
TCF4-249ENST00000625716 CYB5RLQ6IPT4 315 aa10.93□□□□□ -0.66
TCF4-249ENST00000625716 PCDHB8Q9UN66 801 aa10.93□□□□□ -0.66
TCF4-249ENST00000625716 TRIM35Q9UPQ4 493 aa10.93□□□□□ -0.66
TCF4-249ENST00000625716 ERICH3Q5RHP9 1530 aa10.92□□□□□ -0.66
TCF4-249ENST00000625716 FHAD1B1AJZ9 1412 aa10.92□□□□□ -0.66
TCF4-249ENST00000625716 TMEM106CQ9BVX2 250 aa10.91□□□□□ -0.66
TCF4-249ENST00000625716 GRIN2AQ12879 1464 aa10.9□□□□□ -0.66
TCF4-249ENST00000625716 GSE1Q14687 1217 aa10.89□□□□□ -0.67
TCF4-249ENST00000625716 KIF27Q86VH2 1401 aa10.89□□□□□ -0.67
TCF4-249ENST00000625716 ADAMTS12P58397 1594 aa10.89□□□□□ -0.67
TCF4-249ENST00000625716 CLASP1Q7Z460 1538 aa10.89□□□□□ -0.67
TCF4-249ENST00000625716 CHRM1P11229 460 aaPredicted RBP10.87□□□□□ -0.67
TCF4-249ENST00000625716 SPOCK2Q92563 424 aa10.87□□□□□ -0.67
TCF4-249ENST00000625716 IER5LQ5T953 404 aa10.86□□□□□ -0.67
TCF4-249ENST00000625716 IGF1RP08069 1367 aa10.84□□□□□ -0.67
TCF4-249ENST00000625716 ARAP1Q96P48 1450 aa10.84□□□□□ -0.67
TCF4-249ENST00000625716 NUP160Q12769 1436 aa10.84□□□□□ -0.67
TCF4-249ENST00000625716 SEC24BO95487 1268 aa10.82□□□□□ -0.68
TCF4-249ENST00000625716 CEP170Q5SW79 1584 aa10.82□□□□□ -0.68
TCF4-249ENST00000625716 MAMSTRQ6ZN01 415 aa10.81□□□□□ -0.68
TCF4-249ENST00000625716 IRX5P78411 483 aaPredicted RBP10.8□□□□□ -0.68
TCF4-249ENST00000625716 CUL7Q14999 1698 aa10.79□□□□□ -0.68
TCF4-249ENST00000625716 CARMIL1Q5VZK9 1371 aa10.79□□□□□ -0.68
TCF4-249ENST00000625716 JPH4Q96JJ6 628 aa10.79□□□□□ -0.68
TCF4-249ENST00000625716 ZNF467Q7Z7K2 595 aaPredicted RBP10.77□□□□□ -0.69
TCF4-249ENST00000625716 CIZ1Q9ULV3 898 aaPredicted RBP10.77□□□□□ -0.69
TCF4-249ENST00000625716 PRG4Q92954 1404 aaPredicted RBP10.76□□□□□ -0.69
TCF4-249ENST00000625716 SCUBE2Q9NQ36 999 aa10.75□□□□□ -0.69
TCF4-249ENST00000625716 KIAA0586Q9BVV6 1533 aa10.74□□□□□ -0.69
TCF4-249ENST00000625716 SHROOM2Q13796 1616 aa10.74□□□□□ -0.69
TCF4-249ENST00000625716 LCE2DQ5TA82 110 aaPredicted RBP10.74□□□□□ -0.69
TCF4-249ENST00000625716 ERCC6L2Q5T890 1561 aa10.73□□□□□ -0.69
TCF4-249ENST00000625716 PLCG2P16885 1265 aa10.72□□□□□ -0.69
TCF4-249ENST00000625716 PSEN1P49768 467 aa10.72□□□□□ -0.69
TCF4-249ENST00000625716 RUSC2Q8N2Y8 1516 aa10.72□□□□□ -0.69
TCF4-249ENST00000625716 OCEL1Q9H607 264 aa10.71□□□□□ -0.69
TCF4-249ENST00000625716 RAPGEF2Q9Y4G8 1499 aa10.71□□□□□ -0.69
TCF4-249ENST00000625716 CARMIL2Q6F5E8 1435 aa10.68□□□□□ -0.7
TCF4-249ENST00000625716 PDCD7Q8N8D1 485 aaKnown RBP10.68□□□□□ -0.7
TCF4-249ENST00000625716 TTBK1Q5TCY1 1321 aaPredicted RBP10.67□□□□□ -0.7
TCF4-249ENST00000625716 PDAP1Q13442 181 aaKnown RBP10.67□□□□□ -0.7
TCF4-249ENST00000625716 IQGAP2Q13576 1575 aa10.65□□□□□ -0.7
TCF4-249ENST00000625716 POTEMA6NI47 508 aa10.65□□□□□ -0.7
TCF4-249ENST00000625716 FAM163AQ96GL9 167 aaPredicted RBP10.65□□□□□ -0.7
TCF4-249ENST00000625716 POTEGQ6S5H5 508 aa10.64□□□□□ -0.71
TCF4-249ENST00000625716 PTPRGP23470 1445 aa10.64□□□□□ -0.71
TCF4-249ENST00000625716 ILDR1Q86SU0 546 aaPredicted RBP10.63□□□□□ -0.71
TCF4-249ENST00000625716 TNIKQ9UKE5 1360 aa10.63□□□□□ -0.71
TCF4-249ENST00000625716 EEA1Q15075 1411 aa10.62□□□□□ -0.71
TCF4-249ENST00000625716 FAM9AQ8IZU1 332 aaPredicted RBP10.62□□□□□ -0.71
TCF4-249ENST00000625716 MKRN3Q13064 507 aaKnown RBP10.61□□□□□ -0.71
TCF4-249ENST00000625716 SLAIN1Q8ND83 568 aa10.61□□□□□ -0.71
TCF4-249ENST00000625716 RNF25Q96BH1 459 aaPredicted RBP10.61□□□□□ -0.71
TCF4-249ENST00000625716 PRXQ9BXM0 1461 aa10.61□□□□□ -0.71
TCF4-249ENST00000625716 GOLGA2Q08379 1002 aa10.59□□□□□ -0.71
TCF4-249ENST00000625716 CABP2Q9NPB3 220 aa10.59□□□□□ -0.71
TCF4-249ENST00000625716 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.59□□□□□ -0.71
TCF4-249ENST00000625716 DPY19L2Q6NUT2 758 aa10.58□□□□□ -0.72
TCF4-249ENST00000625716 UGGT2Q9NYU1 1516 aa10.58□□□□□ -0.72
TCF4-249ENST00000625716 GOLGA3Q08378 1498 aa10.57□□□□□ -0.72
TCF4-249ENST00000625716 DISP1Q96F81 1524 aa10.57□□□□□ -0.72
TCF4-249ENST00000625716 ADCY10Q96PN6 1610 aa10.55□□□□□ -0.72
TCF4-249ENST00000625716 CTTNBP2Q8WZ74 1663 aa10.55□□□□□ -0.72
TCF4-249ENST00000625716 FAM69CQ0P6D2 419 aa10.55□□□□□ -0.72
TCF4-249ENST00000625716 UACAQ9BZF9 1416 aa10.54□□□□□ -0.72
TCF4-249ENST00000625716 KIAA0556O60303 1618 aa10.54□□□□□ -0.72
TCF4-249ENST00000625716 MAPKBP1O60336 1514 aa10.53□□□□□ -0.72
TCF4-249ENST00000625716 RANGAP1P46060 587 aaPredicted RBP10.52□□□□□ -0.73
TCF4-249ENST00000625716 P3H3Q8IVL6 736 aa10.52□□□□□ -0.73
TCF4-249ENST00000625716 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.52□□□□□ -0.73
TCF4-249ENST00000625716 ABCC2Q92887 1545 aa10.52□□□□□ -0.73
TCF4-249ENST00000625716 UHRF1BP1LA0JNW5 1464 aa10.51□□□□□ -0.73
TCF4-249ENST00000625716 ABCC10Q5T3U5 1492 aa10.51□□□□□ -0.73
TCF4-249ENST00000625716 RIOK3O14730 519 aaKnown RBP10.51□□□□□ -0.73
TCF4-249ENST00000625716 EFCAB3Q8N7B9 438 aa10.51□□□□□ -0.73
TCF4-249ENST00000625716 ST18O60284 1047 aa10.5□□□□□ -0.73
TCF4-249ENST00000625716 UBTFP17480 764 aaKnown RBP10.5□□□□□ -0.73
TCF4-249ENST00000625716 L3MBTL3Q96JM7 780 aaPredicted RBP10.5□□□□□ -0.73
TCF4-249ENST00000625716 PLB1Q6P1J6 1458 aa10.49□□□□□ -0.73
TCF4-249ENST00000625716 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.47□□□□□ -0.73
TCF4-249ENST00000625716 ZFP91Q96JP5 570 aaPredicted RBP10.47□□□□□ -0.73
TCF4-249ENST00000625716 ASXL2Q76L83 1435 aa10.47□□□□□ -0.73
TCF4-249ENST00000625716 KIF21BO75037 1637 aa10.47□□□□□ -0.73
TCF4-249ENST00000625716 PLSCR2Q9NRY7 297 aa10.46□□□□□ -0.73
TCF4-249ENST00000625716 KIF13AQ9H1H9 1805 aa10.45□□□□□ -0.74
TCF4-249ENST00000625716 DIP2BQ9P265 1576 aa10.45□□□□□ -0.74
TCF4-249ENST00000625716 KDM5BQ9UGL1 1544 aa10.45□□□□□ -0.74
TCF4-249ENST00000625716 VGFO15240 615 aaPredicted RBP10.44□□□□□ -0.74
TCF4-249ENST00000625716 ARID3CA6NKF2 412 aa10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms