RNA–Protein interactions for RNA: ENST00000624354.3

VCL-207, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 3,307 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-207ENST00000624354 GCC2Q8IWJ2 1684 aa11.94□□□□□ -0.5
VCL-207ENST00000624354 PRKRIP1Q9H875 184 aaPredicted RBP11.93□□□□□ -0.5
VCL-207ENST00000624354 ANO8Q9HCE9 1232 aaPredicted RBP11.93□□□□□ -0.5
VCL-207ENST00000624354 EPRSP07814 1512 aaKnown RBP11.92□□□□□ -0.5
VCL-207ENST00000624354 CCDC7Q96M83 1385 aa11.92□□□□□ -0.5
VCL-207ENST00000624354 MRC2Q9UBG0 1479 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 NCOA1Q15788 1441 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 FOXD1Q16676 465 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 PPP4R2Q9NY27 417 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 CCDC184Q52MB2 194 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 FAM9BQ8IZU0 186 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 MRS2Q9HD23 443 aa11.91□□□□□ -0.5
VCL-207ENST00000624354 KDM6BO15054 1643 aa11.9□□□□□ -0.51
VCL-207ENST00000624354 C11orf95C9JLR9 678 aaPredicted RBP11.89□□□□□ -0.51
VCL-207ENST00000624354 ANKRD30BQ9BXX2 1392 aa11.88□□□□□ -0.51
VCL-207ENST00000624354 CDK13Q14004 1512 aaKnown RBP11.88□□□□□ -0.51
VCL-207ENST00000624354 ZBED9Q6R2W3 1325 aa11.88□□□□□ -0.51
VCL-207ENST00000624354 IQGAP2Q13576 1575 aa11.88□□□□□ -0.51
VCL-207ENST00000624354 ROCK1Q13464 1354 aa11.88□□□□□ -0.51
VCL-207ENST00000624354 RPRD2Q5VT52 1461 aaKnown RBP11.87□□□□□ -0.51
VCL-207ENST00000624354 CNGB1Q14028 1251 aaPredicted RBP11.87□□□□□ -0.51
VCL-207ENST00000624354 WDR62O43379 1518 aa11.87□□□□□ -0.51
VCL-207ENST00000624354 NBPF8Q3BBV2 869 aa11.87□□□□□ -0.51
VCL-207ENST00000624354 SLC4A1APQ9BWU0 796 aaKnown RBP11.86□□□□□ -0.51
VCL-207ENST00000624354 DAPK1P53355 1430 aa11.86□□□□□ -0.51
VCL-207ENST00000624354 KIF7Q2M1P5 1343 aa11.85□□□□□ -0.51
VCL-207ENST00000624354 TARBP1Q13395 1621 aaKnown RBP11.85□□□□□ -0.51
VCL-207ENST00000624354 TEX14Q8IWB6 1497 aa11.84□□□□□ -0.51
VCL-207ENST00000624354 ABCC5O15440 1437 aa11.83□□□□□ -0.52
VCL-207ENST00000624354 SPATA31E1Q6ZUB1 1445 aa11.83□□□□□ -0.52
VCL-207ENST00000624354 SENP3-EIF4A1A0A087X0R7 540 aa11.82□□□□□ -0.52
VCL-207ENST00000624354 B4GALNT3Q6L9W6 998 aa11.81□□□□□ -0.52
VCL-207ENST00000624354 ZNF644Q9H582 1327 aaPredicted RBP11.81□□□□□ -0.52
VCL-207ENST00000624354 SALL2Q9Y467 1007 aaPredicted RBP11.8□□□□□ -0.52
VCL-207ENST00000624354 ADAMTS12P58397 1594 aa11.8□□□□□ -0.52
VCL-207ENST00000624354 DNMT1P26358 1616 aaKnown RBP11.79□□□□□ -0.52
VCL-207ENST00000624354 PBRM1Q86U86 1689 aa11.79□□□□□ -0.52
VCL-207ENST00000624354 NBR1Q14596 966 aa11.78□□□□□ -0.52
VCL-207ENST00000624354 POLR3GLQ9BT43 218 aa11.76□□□□□ -0.53
VCL-207ENST00000624354 CFDP1Q9UEE9 299 aaPredicted RBP11.76□□□□□ -0.53
VCL-207ENST00000624354 NUP153P49790 1475 aaKnown RBP11.76□□□□□ -0.53
VCL-207ENST00000624354 NOP58Q9Y2X3 529 aaKnown RBP11.76□□□□□ -0.53
VCL-207ENST00000624354 SMG6Q86US8 1419 aaKnown RBP11.75□□□□□ -0.53
VCL-207ENST00000624354 KIAA0586Q9BVV6 1533 aa11.75□□□□□ -0.53
VCL-207ENST00000624354 ZNF326Q5BKZ1 582 aaKnown RBP11.75□□□□□ -0.53
VCL-207ENST00000624354 USP47Q96K76 1375 aa11.75□□□□□ -0.53
VCL-207ENST00000624354 PZPP20742 1482 aa11.75□□□□□ -0.53
VCL-207ENST00000624354 NUDCQ9Y266 331 aa11.74□□□□□ -0.53
VCL-207ENST00000624354 ARID4BQ4LE39 1312 aaPredicted RBP11.74□□□□□ -0.53
VCL-207ENST00000624354 DHX29Q7Z478 1369 aaKnown RBP11.74□□□□□ -0.53
VCL-207ENST00000624354 JPH4Q96JJ6 628 aa11.74□□□□□ -0.53
VCL-207ENST00000624354 KIAA1107Q9UPP5 1409 aa11.74□□□□□ -0.53
VCL-207ENST00000624354 DISP1Q96F81 1524 aa11.73□□□□□ -0.53
VCL-207ENST00000624354 KIAA0556O60303 1618 aa11.73□□□□□ -0.53
VCL-207ENST00000624354 POLR1AO95602 1720 aaPredicted RBP11.73□□□□□ -0.53
VCL-207ENST00000624354 PKD2Q13563 968 aa11.73□□□□□ -0.53
VCL-207ENST00000624354 TROQ12816 1431 aaPredicted RBP11.72□□□□□ -0.53
VCL-207ENST00000624354 CCDC136Q96JN2 1154 aa11.72□□□□□ -0.53
VCL-207ENST00000624354 IFT140Q96RY7 1462 aa11.72□□□□□ -0.53
VCL-207ENST00000624354 ZNF777Q9ULD5 760 aaPredicted RBP11.72□□□□□ -0.53
VCL-207ENST00000624354 CAMSAP2Q08AD1 1489 aa11.72□□□□□ -0.53
VCL-207ENST00000624354 MBD5Q9P267 1494 aa11.72□□□□□ -0.53
VCL-207ENST00000624354 RTL5Q5HYW3 569 aaPredicted RBP11.71□□□□□ -0.53
VCL-207ENST00000624354 RAPGEF6Q8TEU7 1601 aa11.71□□□□□ -0.53
VCL-207ENST00000624354 PRG4Q92954 1404 aaPredicted RBP11.71□□□□□ -0.53
VCL-207ENST00000624354 ROCK2O75116 1388 aaKnown RBP11.71□□□□□ -0.54
VCL-207ENST00000624354 ANKRD30AQ9BXX3 1397 aa11.71□□□□□ -0.54
VCL-207ENST00000624354 TMC1Q8TDI8 760 aa11.7□□□□□ -0.54
VCL-207ENST00000624354 RNF123Q5XPI4 1314 aa11.7□□□□□ -0.54
VCL-207ENST00000624354 ADGRL2O95490 1459 aa11.69□□□□□ -0.54
VCL-207ENST00000624354 GPATCH8Q9UKJ3 1502 aaKnown RBP11.68□□□□□ -0.54
VCL-207ENST00000624354 PNISRQ8TF01 805 aaKnown RBP11.68□□□□□ -0.54
VCL-207ENST00000624354 UBE2Q2Q8WVN8 375 aa11.68□□□□□ -0.54
VCL-207ENST00000624354 EIF4G3O43432 1585 aaKnown RBP11.68□□□□□ -0.54
VCL-207ENST00000624354 PAK3O75914 559 aaPredicted RBP11.68□□□□□ -0.54
VCL-207ENST00000624354 CARD11Q9BXL7 1154 aa11.68□□□□□ -0.54
VCL-207ENST00000624354 ANKRD50Q9ULJ7 1429 aa11.67□□□□□ -0.54
VCL-207ENST00000624354 KIF14Q15058 1648 aa11.67□□□□□ -0.54
VCL-207ENST00000624354 IL27Q8NEV9 243 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 GRIN2AQ12879 1464 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 ITSN2Q9NZM3 1697 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 BCORL1Q5H9F3 1711 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 KIF15Q9NS87 1388 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 UHRF1BP1Q6BDS2 1440 aa11.66□□□□□ -0.54
VCL-207ENST00000624354 RTN4Q9NQC3 1192 aaKnown RBP11.65□□□□□ -0.54
VCL-207ENST00000624354 KDM5CP41229 1560 aa11.65□□□□□ -0.54
VCL-207ENST00000624354 ADGBQ8N7X0 1667 aa11.65□□□□□ -0.54
VCL-207ENST00000624354 NUP155O75694 1391 aa11.65□□□□□ -0.54
VCL-207ENST00000624354 RALGAPBQ86X10 1494 aa11.65□□□□□ -0.54
VCL-207ENST00000624354 ANP32AP39687 249 aaKnown RBP11.64□□□□□ -0.55
VCL-207ENST00000624354 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.64□□□□□ -0.55
VCL-207ENST00000624354 PLB1Q6P1J6 1458 aa11.64□□□□□ -0.55
VCL-207ENST00000624354 KTN1Q86UP2 1357 aaKnown RBP11.63□□□□□ -0.55
VCL-207ENST00000624354 RALBP1Q15311 655 aa11.63□□□□□ -0.55
VCL-207ENST00000624354 BRD4O60885 1362 aaPredicted RBP11.63□□□□□ -0.55
VCL-207ENST00000624354 MYBBP1AQ9BQG0 1328 aaKnown RBP11.62□□□□□ -0.55
VCL-207ENST00000624354 ST20-MTHFSA0A0A6YYL1 179 aa11.62□□□□□ -0.55
VCL-207ENST00000624354 PLEKHD1A6NEE1 506 aa11.62□□□□□ -0.55
VCL-207ENST00000624354 TSPY4P0CV99 314 aa11.62□□□□□ -0.55
VCL-207ENST00000624354 TSPY10P0CW01 314 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms