RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 AMER1Q5JTC6 1135 aaPredicted RBP11.26□□□□□ -0.61
VCL-206ENST00000623461 CC2D1BQ5T0F9 858 aaKnown RBP11.26□□□□□ -0.61
VCL-206ENST00000623461 RAB3GAP2Q9H2M9 1393 aa11.26□□□□□ -0.61
VCL-206ENST00000623461 TMF1P82094 1093 aa11.26□□□□□ -0.61
VCL-206ENST00000623461 CALD1Q05682 793 aaKnown RBP11.26□□□□□ -0.61
VCL-206ENST00000623461 FAM161AQ3B820 660 aa11.25□□□□□ -0.61
VCL-206ENST00000623461 TPRNQ4KMQ1 711 aa11.25□□□□□ -0.61
VCL-206ENST00000623461 ZBED9Q6R2W3 1325 aa11.25□□□□□ -0.61
VCL-206ENST00000623461 SMARCA2P51531 1590 aa11.24□□□□□ -0.61
VCL-206ENST00000623461 PKNOX2Q96KN3 472 aa11.24□□□□□ -0.61
VCL-206ENST00000623461 CENPQQ7L2Z9 268 aaPredicted RBP11.24□□□□□ -0.61
VCL-206ENST00000623461 PHLDB1Q86UU1 1377 aa11.23□□□□□ -0.61
VCL-206ENST00000623461 NEUROD2Q15784 382 aa11.23□□□□□ -0.61
VCL-206ENST00000623461 PHF14O94880 888 aa11.22□□□□□ -0.61
VCL-206ENST00000623461 MAP7D2Q96T17 732 aa11.22□□□□□ -0.61
VCL-206ENST00000623461 ARID3AQ99856 593 aa11.22□□□□□ -0.61
VCL-206ENST00000623461 ARHGAP35Q9NRY4 1499 aa11.21□□□□□ -0.61
VCL-206ENST00000623461 RGL3Q3MIN7 710 aa11.21□□□□□ -0.61
VCL-206ENST00000623461 MTERF4Q7Z6M4 381 aaKnown RBP11.21□□□□□ -0.61
VCL-206ENST00000623461 ROCK2O75116 1388 aaKnown RBP11.21□□□□□ -0.61
VCL-206ENST00000623461 CSPP1Q1MSJ5 1256 aa11.21□□□□□ -0.61
VCL-206ENST00000623461 IPO8O15397 1037 aaKnown RBP11.21□□□□□ -0.62
VCL-206ENST00000623461 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.21□□□□□ -0.62
VCL-206ENST00000623461 DHX57Q6P158 1386 aaKnown RBP11.21□□□□□ -0.62
VCL-206ENST00000623461 SOGA1O94964 1423 aa11.19□□□□□ -0.62
VCL-206ENST00000623461 FAM43AQ8N2R8 423 aa11.19□□□□□ -0.62
VCL-206ENST00000623461 ANO8Q9HCE9 1232 aaPredicted RBP11.19□□□□□ -0.62
VCL-206ENST00000623461 HTATSF1O43719 755 aaKnown RBP11.18□□□□□ -0.62
VCL-206ENST00000623461 KCNH8Q96L42 1107 aa11.18□□□□□ -0.62
VCL-206ENST00000623461 TPM2P07951 284 aa11.18□□□□□ -0.62
VCL-206ENST00000623461 MFAP1P55081 439 aaKnown RBP11.17□□□□□ -0.62
VCL-206ENST00000623461 RRP1P56182 461 aaKnown RBP11.17□□□□□ -0.62
VCL-206ENST00000623461 HAP1P54257 671 aaPredicted RBP11.17□□□□□ -0.62
VCL-206ENST00000623461 CFDP1Q9UEE9 299 aaPredicted RBP11.17□□□□□ -0.62
VCL-206ENST00000623461 GOLGA2Q08379 1002 aa11.16□□□□□ -0.62
VCL-206ENST00000623461 KCNJ4P48050 445 aa11.15□□□□□ -0.62
VCL-206ENST00000623461 NLRP13Q86W25 1043 aa11.15□□□□□ -0.62
VCL-206ENST00000623461 GOLGA6L1Q8N7Z2 621 aa11.15□□□□□ -0.62
VCL-206ENST00000623461 NFKBIBQ15653 356 aa11.14□□□□□ -0.63
VCL-206ENST00000623461 TPM4P67936 248 aa11.14□□□□□ -0.63
VCL-206ENST00000623461 FGD1P98174 961 aa11.14□□□□□ -0.63
VCL-206ENST00000623461 ZNF771Q7L3S4 317 aaPredicted RBP11.14□□□□□ -0.63
VCL-206ENST00000623461 KIF15Q9NS87 1388 aa11.14□□□□□ -0.63
VCL-206ENST00000623461 PLEKHD1A6NEE1 506 aa11.13□□□□□ -0.63
VCL-206ENST00000623461 FMN1Q68DA7 1419 aa11.13□□□□□ -0.63
VCL-206ENST00000623461 ZBTB7CA1YPR0 619 aa11.13□□□□□ -0.63
VCL-206ENST00000623461 DCAF11Q8TEB1 546 aa11.13□□□□□ -0.63
VCL-206ENST00000623461 CHMP5Q9NZZ3 219 aa11.13□□□□□ -0.63
VCL-206ENST00000623461 MRE11P49959 708 aa11.12□□□□□ -0.63
VCL-206ENST00000623461 KANK4Q5T7N3 995 aaPredicted RBP11.12□□□□□ -0.63
VCL-206ENST00000623461 DDX49Q9Y6V7 483 aaKnown RBP11.12□□□□□ -0.63
VCL-206ENST00000623461 SLC4A3P48751 1232 aa11.12□□□□□ -0.63
VCL-206ENST00000623461 MYBBP1AQ9BQG0 1328 aaKnown RBP11.12□□□□□ -0.63
VCL-206ENST00000623461 EXOC6Q8TAG9 804 aa11.11□□□□□ -0.63
VCL-206ENST00000623461 FAM13BQ9NYF5 915 aa11.11□□□□□ -0.63
VCL-206ENST00000623461 PRKRIP1Q9H875 184 aaPredicted RBP11.11□□□□□ -0.63
VCL-206ENST00000623461 ST18O60284 1047 aa11.11□□□□□ -0.63
VCL-206ENST00000623461 BAZ1BQ9UIG0 1483 aaKnown RBP11.11□□□□□ -0.63
VCL-206ENST00000623461 SETQ01105 290 aaPredicted RBP11.1□□□□□ -0.63
VCL-206ENST00000623461 ITPRIPQ8IWB1 547 aa11.1□□□□□ -0.63
VCL-206ENST00000623461 U2SURPO15042 1029 aaKnown RBP11.1□□□□□ -0.63
VCL-206ENST00000623461 KIAA1211Q6ZU35 1233 aa11.1□□□□□ -0.63
VCL-206ENST00000623461 CENPJQ9HC77 1338 aaPredicted RBP11.1□□□□□ -0.63
VCL-206ENST00000623461 OS9Q13438 667 aaPredicted RBP11.09□□□□□ -0.63
VCL-206ENST00000623461 MORC1Q86VD1 984 aa11.09□□□□□ -0.63
VCL-206ENST00000623461 MPHOSPH9Q99550 1183 aa11.09□□□□□ -0.63
VCL-206ENST00000623461 RRP9O43818 475 aaKnown RBP11.09□□□□□ -0.63
VCL-206ENST00000623461 KIF16BQ96L93 1317 aa11.09□□□□□ -0.63
VCL-206ENST00000623461 IL27Q8NEV9 243 aa11.09□□□□□ -0.63
VCL-206ENST00000623461 TOP2AP11388 1531 aaKnown RBP11.07□□□□□ -0.64
VCL-206ENST00000623461 CGNL1Q0VF96 1302 aa11.07□□□□□ -0.64
VCL-206ENST00000623461 CRBNQ96SW2 442 aa11.07□□□□□ -0.64
VCL-206ENST00000623461 TEX35Q5T0J7 233 aa11.07□□□□□ -0.64
VCL-206ENST00000623461 PODXL2Q9NZ53 605 aa11.06□□□□□ -0.64
VCL-206ENST00000623461 GPS2Q13227 327 aa11.06□□□□□ -0.64
VCL-206ENST00000623461 BRPF3Q9ULD4 1205 aa11.06□□□□□ -0.64
VCL-206ENST00000623461 ISY1Q9ULR0 285 aaKnown RBP11.05□□□□□ -0.64
VCL-206ENST00000623461 CCDC88BA6NC98 1476 aa11.05□□□□□ -0.64
VCL-206ENST00000623461 L3MBTL2Q969R5 705 aa11.04□□□□□ -0.64
VCL-206ENST00000623461 ATP6V1DQ9Y5K8 247 aa11.04□□□□□ -0.64
VCL-206ENST00000623461 EIF3AQ14152 1382 aaKnown RBP11.04□□□□□ -0.64
VCL-206ENST00000623461 CARMIL1Q5VZK9 1371 aa11.04□□□□□ -0.64
VCL-206ENST00000623461 CCDC39Q9UFE4 941 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 NAP1L2Q9ULW6 460 aaPredicted RBP11.03□□□□□ -0.64
VCL-206ENST00000623461 AAMPQ13685 434 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 FOXD4L1Q9NU39 408 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 DIAPH3Q9NSV4 1193 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 ABCC8Q09428 1581 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 SMC4Q9NTJ3 1288 aa11.03□□□□□ -0.64
VCL-206ENST00000623461 UBE2Q2Q8WVN8 375 aa11.02□□□□□ -0.64
VCL-206ENST00000623461 CCDC66A2RUB6 948 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 NGEFQ8N5V2 710 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 PKD2Q13563 968 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 SMARCA4P51532 1647 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 E9PSI1 815 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 HMMRO75330 724 aa11.02□□□□□ -0.65
VCL-206ENST00000623461 NUCB2P80303 420 aa11.01□□□□□ -0.65
VCL-206ENST00000623461 NOM1Q5C9Z4 860 aaKnown RBP11.01□□□□□ -0.65
VCL-206ENST00000623461 CCDC173Q0VFZ6 552 aa11.01□□□□□ -0.65
VCL-206ENST00000623461 R3HCC1Q9Y3T6 440 aaKnown RBP11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms