RNA–Protein interactions for RNA: ENST00000620996.4

VTA1-205, Transcript of vesicle trafficking 1, humanhuman

TSL 3 BASIC

Gene VTA1, Length 3,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1-205ENST00000620996 ABCC5O15440 1437 aa14.33□□□□□ -0.11
VTA1-205ENST00000620996 SHROOM2Q13796 1616 aa14.33□□□□□ -0.12
VTA1-205ENST00000620996 ITSN2Q9NZM3 1697 aa14.31□□□□□ -0.12
VTA1-205ENST00000620996 HNRNPMP52272 730 aaKnown RBP eCLIP14.31□□□□□ -0.12
VTA1-205ENST00000620996 CLASP1Q7Z460 1538 aa14.31□□□□□ -0.12
VTA1-205ENST00000620996 FOXD1Q16676 465 aa14.3□□□□□ -0.12
VTA1-205ENST00000620996 TONSLQ96HA7 1378 aa14.3□□□□□ -0.12
VTA1-205ENST00000620996 TSPY4P0CV99 314 aa14.29□□□□□ -0.12
VTA1-205ENST00000620996 TSPY10P0CW01 314 aa14.29□□□□□ -0.12
VTA1-205ENST00000620996 DNMT1P26358 1616 aaKnown RBP14.28□□□□□ -0.12
VTA1-205ENST00000620996 ADCY10Q96PN6 1610 aa14.28□□□□□ -0.12
VTA1-205ENST00000620996 OSCARQ8IYS5 282 aa14.28□□□□□ -0.12
VTA1-205ENST00000620996 ABCC2Q92887 1545 aa14.28□□□□□ -0.12
VTA1-205ENST00000620996 KDM6BO15054 1643 aa14.28□□□□□ -0.12
VTA1-205ENST00000620996 MPHOSPH9Q99550 1183 aa14.27□□□□□ -0.13
VTA1-205ENST00000620996 ABCC10Q5T3U5 1492 aa14.26□□□□□ -0.13
VTA1-205ENST00000620996 SLC4A1APQ9BWU0 796 aaKnown RBP14.26□□□□□ -0.13
VTA1-205ENST00000620996 AKNAQ7Z591 1439 aa14.25□□□□□ -0.13
VTA1-205ENST00000620996 GCC2Q8IWJ2 1684 aa14.25□□□□□ -0.13
VTA1-205ENST00000620996 ROCK1Q13464 1354 aa14.25□□□□□ -0.13
VTA1-205ENST00000620996 ANKRD30AQ9BXX3 1397 aa14.24□□□□□ -0.13
VTA1-205ENST00000620996 CDC42BPAQ5VT25 1732 aa14.24□□□□□ -0.13
VTA1-205ENST00000620996 ARHGAP5Q13017 1502 aa14.23□□□□□ -0.13
VTA1-205ENST00000620996 HIRIP3Q9BW71 556 aaPredicted RBP14.22□□□□□ -0.13
VTA1-205ENST00000620996 C9orf84Q5VXU9 1444 aa14.21□□□□□ -0.13
VTA1-205ENST00000620996 NCOA1Q15788 1441 aa14.21□□□□□ -0.14
VTA1-205ENST00000620996 PPP1R15AO75807 674 aaPredicted RBP14.19□□□□□ -0.14
VTA1-205ENST00000620996 TTC37Q6PGP7 1564 aa14.19□□□□□ -0.14
VTA1-205ENST00000620996 MIER1Q8N108 512 aa14.19□□□□□ -0.14
VTA1-205ENST00000620996 ZCCHC11Q5TAX3 1644 aaKnown RBP14.19□□□□□ -0.14
VTA1-205ENST00000620996 NPM1P06748 294 aaKnown RBP eCLIP14.18□□□□□ -0.14
VTA1-205ENST00000620996 YTHDC1Q96MU7 727 aaKnown RBP14.18□□□□□ -0.14
VTA1-205ENST00000620996 TIMELESSQ9UNS1 1208 aa14.18□□□□□ -0.14
VTA1-205ENST00000620996 MYT1LQ9UL68 1186 aa14.18□□□□□ -0.14
VTA1-205ENST00000620996 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.18□□□□□ -0.14
VTA1-205ENST00000620996 ANKRD50Q9ULJ7 1429 aa14.17□□□□□ -0.14
VTA1-205ENST00000620996 KIF15Q9NS87 1388 aa14.16□□□□□ -0.14
VTA1-205ENST00000620996 EFCAB2Q5VUJ9 269 aa14.15□□□□□ -0.14
VTA1-205ENST00000620996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.15□□□□□ -0.141e-6■■□□□ 12.9
VTA1-205ENST00000620996 SYCP2Q9BX26 1530 aa14.15□□□□□ -0.14
VTA1-205ENST00000620996 UHRF1BP1LA0JNW5 1464 aa14.15□□□□□ -0.14
VTA1-205ENST00000620996 SAMD9LQ8IVG5 1584 aa14.15□□□□□ -0.14
VTA1-205ENST00000620996 ADGBQ8N7X0 1667 aa14.15□□□□□ -0.14
VTA1-205ENST00000620996 BCL11AQ9H165 835 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 PREX2Q70Z35 1606 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 KDM5BQ9UGL1 1544 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 CCDC141Q6ZP82 1450 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 NUP155O75694 1391 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 PKD2Q13563 968 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 CDC42BPBQ9Y5S2 1711 aa14.14□□□□□ -0.15
VTA1-205ENST00000620996 CROCC2H7BZ55 1655 aa14.13□□□□□ -0.15
VTA1-205ENST00000620996 DENND4BO75064 1496 aaPredicted RBP14.12□□□□□ -0.15
VTA1-205ENST00000620996 ADGRL2O95490 1459 aa14.12□□□□□ -0.15
VTA1-205ENST00000620996 ACIN1Q9UKV3 1341 aaKnown RBP14.12□□□□□ -0.15
VTA1-205ENST00000620996 MBD5Q9P267 1494 aa14.11□□□□□ -0.15
VTA1-205ENST00000620996 RSPH4AQ5TD94 716 aa14.11□□□□□ -0.15
VTA1-205ENST00000620996 PRKCSHP14314 528 aaPredicted RBP14.11□□□□□ -0.15
VTA1-205ENST00000620996 ZNF326Q5BKZ1 582 aaKnown RBP14.11□□□□□ -0.15
VTA1-205ENST00000620996 MYO5CQ9NQX4 1742 aa14.11□□□□□ -0.15
VTA1-205ENST00000620996 SHANK2Q9UPX8 1470 aa14.1□□□□□ -0.15
VTA1-205ENST00000620996 L3MBTL2Q969R5 705 aa14.1□□□□□ -0.15
VTA1-205ENST00000620996 PLCH2O75038 1416 aa14.09□□□□□ -0.15
VTA1-205ENST00000620996 GTF3C3Q9Y5Q9 886 aa14.09□□□□□ -0.15
VTA1-205ENST00000620996 DDX10Q13206 875 aaKnown RBP14.09□□□□□ -0.15
VTA1-205ENST00000620996 WDR7Q9Y4E6 1490 aa14.08□□□□□ -0.15
VTA1-205ENST00000620996 ANKRD30BQ9BXX2 1392 aa14.08□□□□□ -0.16
VTA1-205ENST00000620996 ARHGEF5Q12774 1597 aa14.08□□□□□ -0.16
VTA1-205ENST00000620996 PZPP20742 1482 aa14.07□□□□□ -0.16
VTA1-205ENST00000620996 AFAP1Q8N556 730 aa14.07□□□□□ -0.16
VTA1-205ENST00000620996 ASXL2Q76L83 1435 aa14.07□□□□□ -0.16
VTA1-205ENST00000620996 PLEKHH2Q8IVE3 1493 aa14.06□□□□□ -0.16
VTA1-205ENST00000620996 SPAG9O60271 1321 aaKnown RBP14.05□□□□□ -0.16
VTA1-205ENST00000620996 CYB5RLQ6IPT4 315 aa14.05□□□□□ -0.16
VTA1-205ENST00000620996 KIAA1107Q9UPP5 1409 aa14.04□□□□□ -0.16
VTA1-205ENST00000620996 ARHGEF12Q9NZN5 1544 aa14.04□□□□□ -0.16
VTA1-205ENST00000620996 TRAPPC8Q9Y2L5 1435 aa14.03□□□□□ -0.16
VTA1-205ENST00000620996 CENPBP07199 599 aaPredicted RBP14.03□□□□□ -0.16
VTA1-205ENST00000620996 FANCAO15360 1455 aa14.01□□□□□ -0.17
VTA1-205ENST00000620996 RPRD2Q5VT52 1461 aaKnown RBP14.01□□□□□ -0.17
VTA1-205ENST00000620996 KDM2AQ9Y2K7 1162 aa14.01□□□□□ -0.17
VTA1-205ENST00000620996 HSPA5P11021 654 aaKnown RBP13.99□□□□□ -0.17
VTA1-205ENST00000620996 ABCC1P33527 1531 aa13.99□□□□□ -0.17
VTA1-205ENST00000620996 EIF4G2P78344 907 aaKnown RBP eCLIP13.98□□□□□ -0.17
VTA1-205ENST00000620996 NBPF8Q3BBV2 869 aa13.98□□□□□ -0.17
VTA1-205ENST00000620996 SCAPERQ9BY12 1400 aa13.98□□□□□ -0.17
VTA1-205ENST00000620996 ADGRL1O94910 1474 aa13.97□□□□□ -0.17
VTA1-205ENST00000620996 RGL3Q3MIN7 710 aa13.96□□□□□ -0.17
VTA1-205ENST00000620996 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
VTA1-205ENST00000620996 FAM135AQ9P2D6 1515 aa13.95□□□□□ -0.18
VTA1-205ENST00000620996 MAST1Q9Y2H9 1570 aa13.94□□□□□ -0.18
VTA1-205ENST00000620996 DCAF11Q8TEB1 546 aa13.94□□□□□ -0.18
VTA1-205ENST00000620996 CD109Q6YHK3 1445 aa13.94□□□□□ -0.18
VTA1-205ENST00000620996 TEX14Q8IWB6 1497 aa13.94□□□□□ -0.18
VTA1-205ENST00000620996 DUOX2Q9NRD8 1548 aa13.93□□□□□ -0.18
VTA1-205ENST00000620996 KIF3BO15066 747 aa13.93□□□□□ -0.18
VTA1-205ENST00000620996 ABCA9Q8IUA7 1624 aa13.92□□□□□ -0.18
VTA1-205ENST00000620996 PLXNC1O60486 1568 aa13.91□□□□□ -0.18
VTA1-205ENST00000620996 CCDC144AA2RUR9 1427 aa13.91□□□□□ -0.18
VTA1-205ENST00000620996 ANP32CO43423 234 aa13.9□□□□□ -0.18
VTA1-205ENST00000620996 ERBINQ96RT1 1412 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms