RNA–Protein interactions for RNA: ENST00000611659.4

TPM3-223, Transcript of tropomyosin 3, humanhuman

TSL 3 BASIC

Gene TPM3, Length 3,149 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-223ENST00000611659 SUPT6HQ7KZ85 1726 aaKnown RBP16.1■□□□□ 0.17
TPM3-223ENST00000611659 TOPBP1Q92547 1522 aa16.09■□□□□ 0.17
TPM3-223ENST00000611659 KDM6BO15054 1643 aa16.09■□□□□ 0.17
TPM3-223ENST00000611659 ABCA10Q8WWZ4 1543 aa16.08■□□□□ 0.17
TPM3-223ENST00000611659 CTTNBP2Q8WZ74 1663 aa16.08■□□□□ 0.16
TPM3-223ENST00000611659 SLC4A1APQ9BWU0 796 aaKnown RBP16.08■□□□□ 0.16
TPM3-223ENST00000611659 EHBP1L1Q8N3D4 1523 aa16.07■□□□□ 0.16
TPM3-223ENST00000611659 GRIN2BQ13224 1484 aa16.06■□□□□ 0.16
TPM3-223ENST00000611659 ANO8Q9HCE9 1232 aaPredicted RBP16.06■□□□□ 0.16
TPM3-223ENST00000611659 HECW1Q76N89 1606 aa16.06■□□□□ 0.16
TPM3-223ENST00000611659 LRRIQ1Q96JM4 1722 aa16.05■□□□□ 0.16
TPM3-223ENST00000611659 PRKCSHP14314 528 aaPredicted RBP16.05■□□□□ 0.16
TPM3-223ENST00000611659 TMC1Q8TDI8 760 aa16.05■□□□□ 0.16
TPM3-223ENST00000611659 RTN4Q9NQC3 1192 aaKnown RBP16.05■□□□□ 0.16
TPM3-223ENST00000611659 UGGT2Q9NYU1 1516 aa16.05■□□□□ 0.16
TPM3-223ENST00000611659 LAS1LQ9Y4W2 734 aaKnown RBP16.04■□□□□ 0.16
TPM3-223ENST00000611659 CUL7Q14999 1698 aa16.03■□□□□ 0.16
TPM3-223ENST00000611659 MAGI3Q5TCQ9 1506 aa16.03■□□□□ 0.16
TPM3-223ENST00000611659 SALL2Q9Y467 1007 aaPredicted RBP16.03■□□□□ 0.16
TPM3-223ENST00000611659 ANKRD30BQ9BXX2 1392 aa16.03■□□□□ 0.16
TPM3-223ENST00000611659 IL27Q8NEV9 243 aa16.02■□□□□ 0.16
TPM3-223ENST00000611659 RNF123Q5XPI4 1314 aa16.02■□□□□ 0.15
TPM3-223ENST00000611659 DNMBPQ6XZF7 1577 aa16.01■□□□□ 0.15
TPM3-223ENST00000611659 RPRD2Q5VT52 1461 aaKnown RBP16.01■□□□□ 0.15
TPM3-223ENST00000611659 SPATA31E1Q6ZUB1 1445 aa16.01■□□□□ 0.15
TPM3-223ENST00000611659 GCC2Q8IWJ2 1684 aa16■□□□□ 0.15
TPM3-223ENST00000611659 NEFMP07197 916 aa15.99■□□□□ 0.15
TPM3-223ENST00000611659 DHX29Q7Z478 1369 aaKnown RBP15.99■□□□□ 0.15
TPM3-223ENST00000611659 TCOF1Q13428 1488 aaKnown RBP15.99■□□□□ 0.15
TPM3-223ENST00000611659 EXOC6Q8TAG9 804 aa15.98■□□□□ 0.15
TPM3-223ENST00000611659 PNISRQ8TF01 805 aaKnown RBP15.98■□□□□ 0.15
TPM3-223ENST00000611659 TEX14Q8IWB6 1497 aa15.98■□□□□ 0.15
TPM3-223ENST00000611659 URB2Q14146 1524 aaKnown RBP15.98■□□□□ 0.15
TPM3-223ENST00000611659 SAMD9Q5K651 1589 aa15.98■□□□□ 0.15
TPM3-223ENST00000611659 USP47Q96K76 1375 aa15.97■□□□□ 0.15
TPM3-223ENST00000611659 ARHGEF11O15085 1522 aa15.96■□□□□ 0.15
TPM3-223ENST00000611659 THOC2Q8NI27 1593 aaKnown RBP15.95■□□□□ 0.14
TPM3-223ENST00000611659 ZNF644Q9H582 1327 aaPredicted RBP15.95■□□□□ 0.14
TPM3-223ENST00000611659 GAPVD1Q14C86 1478 aa15.94■□□□□ 0.14
TPM3-223ENST00000611659 PDE4AP27815 886 aa15.94■□□□□ 0.14
TPM3-223ENST00000611659 RRP1P56182 461 aaKnown RBP15.94■□□□□ 0.14
TPM3-223ENST00000611659 CDK13Q14004 1512 aaKnown RBP15.93■□□□□ 0.14
TPM3-223ENST00000611659 TCERG1O14776 1098 aaKnown RBP15.92■□□□□ 0.14
TPM3-223ENST00000611659 MIA2Q96PC5 1412 aa15.92■□□□□ 0.14
TPM3-223ENST00000611659 RCAN3Q9UKA8 241 aa15.91■□□□□ 0.14
TPM3-223ENST00000611659 EPRSP07814 1512 aaKnown RBP15.9■□□□□ 0.14
TPM3-223ENST00000611659 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
TPM3-223ENST00000611659 DAPK1P53355 1430 aa15.9■□□□□ 0.14
TPM3-223ENST00000611659 CARD11Q9BXL7 1154 aa15.88■□□□□ 0.13
TPM3-223ENST00000611659 BACH2Q9BYV9 841 aa15.87■□□□□ 0.13
TPM3-223ENST00000611659 SKAP1Q86WV1 359 aa15.87■□□□□ 0.13
TPM3-223ENST00000611659 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.87■□□□□ 0.13
TPM3-223ENST00000611659 KDM2AQ9Y2K7 1162 aa15.87■□□□□ 0.13
TPM3-223ENST00000611659 ABCC5O15440 1437 aa15.87■□□□□ 0.13
TPM3-223ENST00000611659 PKD2Q13563 968 aa15.86■□□□□ 0.13
TPM3-223ENST00000611659 BCORL1Q5H9F3 1711 aa15.86■□□□□ 0.13
TPM3-223ENST00000611659 ROCK1Q13464 1354 aa15.86■□□□□ 0.13
TPM3-223ENST00000611659 ZNF777Q9ULD5 760 aaPredicted RBP15.85■□□□□ 0.13
TPM3-223ENST00000611659 POLR1AO95602 1720 aaPredicted RBP15.85■□□□□ 0.13
TPM3-223ENST00000611659 PLIN1O60240 522 aa15.85■□□□□ 0.13
TPM3-223ENST00000611659 USP35Q9P2H5 1018 aa15.85■□□□□ 0.13
TPM3-223ENST00000611659 KIF15Q9NS87 1388 aa15.84■□□□□ 0.13
TPM3-223ENST00000611659 PPM1GO15355 546 aaPredicted RBP15.84■□□□□ 0.13
TPM3-223ENST00000611659 MYBBP1AQ9BQG0 1328 aaKnown RBP15.84■□□□□ 0.13
TPM3-223ENST00000611659 ST20-MTHFSA0A0A6YYL1 179 aa15.83■□□□□ 0.12
TPM3-223ENST00000611659 PDS5BQ9NTI5 1447 aa15.83■□□□□ 0.12
TPM3-223ENST00000611659 CDCA7LQ96GN5 454 aa15.82■□□□□ 0.12
TPM3-223ENST00000611659 ARID4BQ4LE39 1312 aaPredicted RBP15.82■□□□□ 0.12
TPM3-223ENST00000611659 ROCK2O75116 1388 aaKnown RBP15.82■□□□□ 0.12
TPM3-223ENST00000611659 FBLN2P98095 1184 aa15.81■□□□□ 0.12
TPM3-223ENST00000611659 MS4A1P11836 297 aa15.81■□□□□ 0.12
TPM3-223ENST00000611659 BRD4O60885 1362 aaPredicted RBP15.8■□□□□ 0.12
TPM3-223ENST00000611659 LRPPRCP42704 1394 aaKnown RBP15.8■□□□□ 0.12
TPM3-223ENST00000611659 RALBP1Q15311 655 aa15.8■□□□□ 0.12
TPM3-223ENST00000611659 SLC4A3P48751 1232 aa15.8■□□□□ 0.12
TPM3-223ENST00000611659 LAMC3Q9Y6N6 1575 aa15.8■□□□□ 0.12
TPM3-223ENST00000611659 PZPP20742 1482 aa15.8■□□□□ 0.12
TPM3-223ENST00000611659 CFDP1Q9UEE9 299 aaPredicted RBP15.79■□□□□ 0.12
TPM3-223ENST00000611659 DAXXQ9UER7 740 aaPredicted RBP15.79■□□□□ 0.12
TPM3-223ENST00000611659 BRPF3Q9ULD4 1205 aa15.78■□□□□ 0.12
TPM3-223ENST00000611659 KIAA1107Q9UPP5 1409 aa15.78■□□□□ 0.12
TPM3-223ENST00000611659 DDRGK1Q96HY6 314 aa15.77■□□□□ 0.11
TPM3-223ENST00000611659 CRBNQ96SW2 442 aa15.77■□□□□ 0.11
TPM3-223ENST00000611659 MBD5Q9P267 1494 aa15.77■□□□□ 0.11
TPM3-223ENST00000611659 KIF21AQ7Z4S6 1674 aa15.76■□□□□ 0.11
TPM3-223ENST00000611659 DCAF11Q8TEB1 546 aa15.76■□□□□ 0.11
TPM3-223ENST00000611659 DNMT1P26358 1616 aaKnown RBP15.76■□□□□ 0.11
TPM3-223ENST00000611659 KDM5CP41229 1560 aa15.76■□□□□ 0.11
TPM3-223ENST00000611659 NLRP13Q86W25 1043 aa15.76■□□□□ 0.11
TPM3-223ENST00000611659 PDE3BQ13370 1112 aa15.74■□□□□ 0.11
TPM3-223ENST00000611659 GSE1Q14687 1217 aa15.74■□□□□ 0.11
TPM3-223ENST00000611659 WASHC2CQ9Y4E1 1318 aa15.74■□□□□ 0.11
TPM3-223ENST00000611659 WDR62O43379 1518 aa15.74■□□□□ 0.11
TPM3-223ENST00000611659 NFKBIBQ15653 356 aa15.73■□□□□ 0.11
TPM3-223ENST00000611659 CC2D1BQ5T0F9 858 aaKnown RBP15.73■□□□□ 0.11
TPM3-223ENST00000611659 KIF14Q15058 1648 aa15.73■□□□□ 0.11
TPM3-223ENST00000611659 IQGAP2Q13576 1575 aa15.72■□□□□ 0.11
TPM3-223ENST00000611659 KTN1Q86UP2 1357 aaKnown RBP15.72■□□□□ 0.11
TPM3-223ENST00000611659 NUP155O75694 1391 aa15.71■□□□□ 0.11
TPM3-223ENST00000611659 C20orf194Q5TEA3 1177 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms