RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 PLCH2O75038 1416 aa10.41□□□□□ -0.74
CUX1-220ENST00000607092 DMRT2Q9Y5R5 561 aa10.41□□□□□ -0.74
CUX1-220ENST00000607092 SCAPERQ9BY12 1400 aa10.41□□□□□ -0.74
CUX1-220ENST00000607092 RIMS1Q86UR5 1692 aaKnown RBP10.4□□□□□ -0.74
CUX1-220ENST00000607092 ATP10AO60312 1499 aa10.39□□□□□ -0.75
CUX1-220ENST00000607092 HECW1Q76N89 1606 aa10.39□□□□□ -0.75
CUX1-220ENST00000607092 CLIP1P30622 1438 aa10.39□□□□□ -0.75
CUX1-220ENST00000607092 TTC37Q6PGP7 1564 aa10.39□□□□□ -0.75
CUX1-220ENST00000607092 UBTFP17480 764 aaKnown RBP10.38□□□□□ -0.75
CUX1-220ENST00000607092 C9orf84Q5VXU9 1444 aa10.38□□□□□ -0.75
CUX1-220ENST00000607092 ZNF518AQ6AHZ1 1483 aa10.37□□□□□ -0.75
CUX1-220ENST00000607092 YEATS2Q9ULM3 1422 aa10.37□□□□□ -0.75
CUX1-220ENST00000607092 ATP1B4Q9UN42 357 aaPredicted RBP10.36□□□□□ -0.75
CUX1-220ENST00000607092 CDK13Q14004 1512 aaKnown RBP10.35□□□□□ -0.75
CUX1-220ENST00000607092 ARHGEF12Q9NZN5 1544 aa10.35□□□□□ -0.75
CUX1-220ENST00000607092 KCNA4P22459 653 aa10.35□□□□□ -0.75
CUX1-220ENST00000607092 MLECQ14165 292 aa10.35□□□□□ -0.75
CUX1-220ENST00000607092 CERKQ8TCT0 537 aa10.35□□□□□ -0.75
CUX1-220ENST00000607092 ESF1Q9H501 851 aaKnown RBP10.35□□□□□ -0.75
CUX1-220ENST00000607092 KIF14Q15058 1648 aa10.35□□□□□ -0.75
CUX1-220ENST00000607092 FER1L4A9Z1Z3 1794 aa10.34□□□□□ -0.75
CUX1-220ENST00000607092 TROQ12816 1431 aaPredicted RBP10.34□□□□□ -0.75
CUX1-220ENST00000607092 MYO5CQ9NQX4 1742 aa10.34□□□□□ -0.75
CUX1-220ENST00000607092 HSPA2P54652 639 aa10.34□□□□□ -0.75
CUX1-220ENST00000607092 MYT1LQ9UL68 1186 aa10.34□□□□□ -0.75
CUX1-220ENST00000607092 UHRF1BP1Q6BDS2 1440 aa10.33□□□□□ -0.76
CUX1-220ENST00000607092 ARHGAP5Q13017 1502 aa10.32□□□□□ -0.76
CUX1-220ENST00000607092 PREX1Q8TCU6 1659 aa10.31□□□□□ -0.76
CUX1-220ENST00000607092 REREQ9P2R6 1566 aa10.31□□□□□ -0.76
CUX1-220ENST00000607092 SETD1BQ9UPS6 1966 aaKnown RBP10.31□□□□□ -0.76
CUX1-220ENST00000607092 KDM5CP41229 1560 aa10.31□□□□□ -0.76
CUX1-220ENST00000607092 CCDC18Q5T9S5 1454 aa10.3□□□□□ -0.76
CUX1-220ENST00000607092 MLH3Q9UHC1 1453 aa10.3□□□□□ -0.76
CUX1-220ENST00000607092 CNTLNQ9NXG0 1405 aa10.3□□□□□ -0.76
CUX1-220ENST00000607092 ARHGAP35Q9NRY4 1499 aa10.3□□□□□ -0.76
CUX1-220ENST00000607092 AGLP35573 1532 aa10.28□□□□□ -0.76
CUX1-220ENST00000607092 AFAP1Q8N556 730 aa10.28□□□□□ -0.76
CUX1-220ENST00000607092 PTPRTO14522 1441 aa10.26□□□□□ -0.77
CUX1-220ENST00000607092 CASKIN1Q8WXD9 1431 aa10.26□□□□□ -0.77
CUX1-220ENST00000607092 TRAPPC8Q9Y2L5 1435 aa10.26□□□□□ -0.77
CUX1-220ENST00000607092 SIGLEC1Q9BZZ2 1709 aa10.25□□□□□ -0.77
CUX1-220ENST00000607092 DIP2CQ9Y2E4 1556 aa10.25□□□□□ -0.77
CUX1-220ENST00000607092 IQSEC2Q5JU85 1478 aa10.24□□□□□ -0.77
CUX1-220ENST00000607092 CEBPAP49715 358 aaPredicted RBP10.24□□□□□ -0.77
CUX1-220ENST00000607092 PREX2Q70Z35 1606 aa10.24□□□□□ -0.77
CUX1-220ENST00000607092 PLEKHH2Q8IVE3 1493 aa10.23□□□□□ -0.77
CUX1-220ENST00000607092 ABCC1P33527 1531 aa10.23□□□□□ -0.77
CUX1-220ENST00000607092 NPATQ14207 1427 aa10.23□□□□□ -0.77
CUX1-220ENST00000607092 FYCO1Q9BQS8 1478 aa10.23□□□□□ -0.77
CUX1-220ENST00000607092 SPAG9O60271 1321 aaKnown RBP10.21□□□□□ -0.78
CUX1-220ENST00000607092 ABCA6Q8N139 1617 aa10.2□□□□□ -0.78
CUX1-220ENST00000607092 EHMT2Q96KQ7 1210 aa10.2□□□□□ -0.78
CUX1-220ENST00000607092 KIAA1107Q9UPP5 1409 aa10.2□□□□□ -0.78
CUX1-220ENST00000607092 CDC42BPBQ9Y5S2 1711 aa10.2□□□□□ -0.78
CUX1-220ENST00000607092 ITSN2Q9NZM3 1697 aa10.19□□□□□ -0.78
CUX1-220ENST00000607092 DISP3Q9P2K9 1392 aa10.19□□□□□ -0.78
CUX1-220ENST00000607092 MROH2AA6NES4 1674 aa10.18□□□□□ -0.78
CUX1-220ENST00000607092 C3P01024 1663 aa10.18□□□□□ -0.78
CUX1-220ENST00000607092 NCOA1Q15788 1441 aa10.18□□□□□ -0.78
CUX1-220ENST00000607092 PKD2Q13563 968 aa10.18□□□□□ -0.78
CUX1-220ENST00000607092 CFDP1Q9UEE9 299 aaPredicted RBP10.18□□□□□ -0.78
CUX1-220ENST00000607092 ZNF777Q9ULD5 760 aaPredicted RBP10.18□□□□□ -0.78
CUX1-220ENST00000607092 STRCQ7RTU9 1775 aa10.18□□□□□ -0.78
CUX1-220ENST00000607092 SAMD9LQ8IVG5 1584 aa10.17□□□□□ -0.78
CUX1-220ENST00000607092 KIDINS220Q9ULH0 1771 aa10.16□□□□□ -0.78
CUX1-220ENST00000607092 ZMYM3Q14202 1370 aa10.16□□□□□ -0.78
CUX1-220ENST00000607092 CCNB3Q8WWL7 1395 aa10.16□□□□□ -0.78
CUX1-220ENST00000607092 GPATCH8Q9UKJ3 1502 aaKnown RBP10.16□□□□□ -0.78
CUX1-220ENST00000607092 SOCS7O14512 581 aa10.15□□□□□ -0.78
CUX1-220ENST00000607092 CDC42BPAQ5VT25 1732 aa10.15□□□□□ -0.78
CUX1-220ENST00000607092 LRRIQ1Q96JM4 1722 aa10.15□□□□□ -0.78
CUX1-220ENST00000607092 PLA2R1Q13018 1463 aa10.15□□□□□ -0.78
CUX1-220ENST00000607092 MTUS2Q5JR59 1369 aa10.14□□□□□ -0.79
CUX1-220ENST00000607092 ATP7AQ04656 1500 aa10.14□□□□□ -0.79
CUX1-220ENST00000607092 A2MP01023 1474 aa10.14□□□□□ -0.79
CUX1-220ENST00000607092 SYCP2Q9BX26 1530 aa10.13□□□□□ -0.79
CUX1-220ENST00000607092 HNRNPMP52272 730 aaKnown RBP eCLIP10.13□□□□□ -0.791e-6■■■□□ 16.6
CUX1-220ENST00000607092 RSPH4AQ5TD94 716 aa10.13□□□□□ -0.79
CUX1-220ENST00000607092 CAMSAP1Q5T5Y3 1602 aa10.13□□□□□ -0.79
CUX1-220ENST00000607092 LTBP4Q8N2S1 1624 aa10.12□□□□□ -0.79
CUX1-220ENST00000607092 FAM135AQ9P2D6 1515 aa10.12□□□□□ -0.79
CUX1-220ENST00000607092 PLXNC1O60486 1568 aa10.11□□□□□ -0.79
CUX1-220ENST00000607092 RTEL1-TNFRSF6BF6WH68 1400 aa10.11□□□□□ -0.79
CUX1-220ENST00000607092 GGT6Q6P531 493 aa10.11□□□□□ -0.79
CUX1-220ENST00000607092 PIAS4Q8N2W9 510 aaPredicted RBP10.11□□□□□ -0.79
CUX1-220ENST00000607092 SPATA31D1Q6ZQQ2 1576 aa10.1□□□□□ -0.79
CUX1-220ENST00000607092 INO80Q9ULG1 1556 aaPredicted RBP10.1□□□□□ -0.79
CUX1-220ENST00000607092 ZNF142P52746 1687 aaPredicted RBP10.1□□□□□ -0.79
CUX1-220ENST00000607092 UBAP1LF5GYI3 381 aa10.1□□□□□ -0.79
CUX1-220ENST00000607092 TCOF1Q13428 1488 aaKnown RBP10.1□□□□□ -0.79
CUX1-220ENST00000607092 ADGBQ8N7X0 1667 aa10.09□□□□□ -0.79
CUX1-220ENST00000607092 PTPRKQ15262 1439 aa10.09□□□□□ -0.79
CUX1-220ENST00000607092 CEP170BQ9Y4F5 1589 aaPredicted RBP10.09□□□□□ -0.79
CUX1-220ENST00000607092 EHBP1L1Q8N3D4 1523 aa10.08□□□□□ -0.8
CUX1-220ENST00000607092 SUPT6HQ7KZ85 1726 aaKnown RBP10.08□□□□□ -0.8
CUX1-220ENST00000607092 A2ML1A8K2U0 1454 aa10.08□□□□□ -0.8
CUX1-220ENST00000607092 NCKAP5LQ9HCH0 1330 aa10.07□□□□□ -0.8
CUX1-220ENST00000607092 MYO3AQ8NEV4 1616 aa10.07□□□□□ -0.8
CUX1-220ENST00000607092 CLTCQ00610 1675 aaKnown RBP10.07□□□□□ -0.8
CUX1-220ENST00000607092 DHX29Q7Z478 1369 aaKnown RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms