RNA–Protein interactions for RNA: ENST00000602574.5

COMMD3-215, Transcript of COMM domain containing 3, humanhuman

TSL 1 (best)

Gene COMMD3, Length 2,290 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-215ENST00000602574 SLC20A2Q08357 652 aa11.61□□□□□ -0.55
COMMD3-215ENST00000602574 WWC1Q8IX03 1113 aa11.61□□□□□ -0.55
COMMD3-215ENST00000602574 KCNG1Q9UIX4 513 aa11.61□□□□□ -0.55
COMMD3-215ENST00000602574 PPP4R3BQ5MIZ7 849 aa11.6□□□□□ -0.55
COMMD3-215ENST00000602574 PTMSP20962 102 aa11.6□□□□□ -0.55
COMMD3-215ENST00000602574 TNNT2P45379 298 aaPredicted RBP11.58□□□□□ -0.56
COMMD3-215ENST00000602574 POLR3GLQ9BT43 218 aa11.57□□□□□ -0.56
COMMD3-215ENST00000602574 FAM193AP78312 1265 aa11.56□□□□□ -0.56
COMMD3-215ENST00000602574 NFKBIBQ15653 356 aa11.56□□□□□ -0.56
COMMD3-215ENST00000602574 PHF14O94880 888 aa11.55□□□□□ -0.56
COMMD3-215ENST00000602574 PLCD3Q8N3E9 789 aa11.55□□□□□ -0.56
COMMD3-215ENST00000602574 TMEM132AQ24JP5 1023 aa11.55□□□□□ -0.56
COMMD3-215ENST00000602574 GTPBP4Q9BZE4 634 aaKnown RBP11.55□□□□□ -0.56
COMMD3-215ENST00000602574 MROH2BQ7Z745 1585 aa11.54□□□□□ -0.56
COMMD3-215ENST00000602574 LETM1O95202 739 aaPredicted RBP11.54□□□□□ -0.56
COMMD3-215ENST00000602574 LAS1LQ9Y4W2 734 aaKnown RBP11.54□□□□□ -0.56
COMMD3-215ENST00000602574 TOP2AP11388 1531 aaKnown RBP11.54□□□□□ -0.56
COMMD3-215ENST00000602574 GOLGA3Q08378 1498 aa11.53□□□□□ -0.56
COMMD3-215ENST00000602574 GOLGA6L3A6NEY3 463 aa11.53□□□□□ -0.56
COMMD3-215ENST00000602574 WIZO95785 1651 aa11.53□□□□□ -0.56
COMMD3-215ENST00000602574 KIF21BO75037 1637 aa11.53□□□□□ -0.56
COMMD3-215ENST00000602574 PSEN1P49768 467 aa11.52□□□□□ -0.56
COMMD3-215ENST00000602574 PLCD4Q9BRC7 762 aa11.52□□□□□ -0.56
COMMD3-215ENST00000602574 HDAC5Q9UQL6 1122 aa11.52□□□□□ -0.57
COMMD3-215ENST00000602574 TRIM44Q96DX7 344 aaPredicted RBP11.51□□□□□ -0.57
COMMD3-215ENST00000602574 YY1AP1Q9H869 796 aa11.51□□□□□ -0.57
COMMD3-215ENST00000602574 ZHX1Q9UKY1 873 aaPredicted RBP11.51□□□□□ -0.57
COMMD3-215ENST00000602574 KCNH8Q96L42 1107 aa11.5□□□□□ -0.57
COMMD3-215ENST00000602574 CEP120Q8N960 986 aa11.49□□□□□ -0.57
COMMD3-215ENST00000602574 PUS7Q96PZ0 661 aaKnown RBP11.49□□□□□ -0.57
COMMD3-215ENST00000602574 KCNA4P22459 653 aa11.49□□□□□ -0.57
COMMD3-215ENST00000602574 BAZ1BQ9UIG0 1483 aaKnown RBP11.48□□□□□ -0.57
COMMD3-215ENST00000602574 PRDM10Q9NQV6 1147 aa11.48□□□□□ -0.57
COMMD3-215ENST00000602574 SETQ01105 290 aaPredicted RBP11.47□□□□□ -0.57
COMMD3-215ENST00000602574 VGLL3A8MV65 326 aa11.46□□□□□ -0.57
COMMD3-215ENST00000602574 PEG3Q9GZU2 1588 aa11.45□□□□□ -0.58
COMMD3-215ENST00000602574 ZSCAN20P17040 1043 aaPredicted RBP11.44□□□□□ -0.58
COMMD3-215ENST00000602574 CEP164Q9UPV0 1460 aa11.44□□□□□ -0.58
COMMD3-215ENST00000602574 SLC52A1Q9NWF4 448 aa11.44□□□□□ -0.58
COMMD3-215ENST00000602574 DNTTIP2Q5QJE6 756 aaKnown RBP11.43□□□□□ -0.58
COMMD3-215ENST00000602574 DNAJC2Q99543 621 aaKnown RBP11.43□□□□□ -0.58
COMMD3-215ENST00000602574 GEMIN8Q9NWZ8 242 aaKnown RBP11.43□□□□□ -0.58
COMMD3-215ENST00000602574 CECR2Q9BXF3 1484 aa11.43□□□□□ -0.58
COMMD3-215ENST00000602574 IGSF3O75054 1194 aa11.42□□□□□ -0.58
COMMD3-215ENST00000602574 ZNF592Q92610 1267 aa11.42□□□□□ -0.58
COMMD3-215ENST00000602574 NPM1P06748 294 aaKnown RBP eCLIP11.41□□□□□ -0.58
COMMD3-215ENST00000602574 SMARCA2P51531 1590 aa11.41□□□□□ -0.58
COMMD3-215ENST00000602574 APPP05067 770 aa11.4□□□□□ -0.58
COMMD3-215ENST00000602574 RALBP1Q15311 655 aa11.4□□□□□ -0.58
COMMD3-215ENST00000602574 NBPF20Q3BBV1 942 aa11.4□□□□□ -0.58
COMMD3-215ENST00000602574 VPS8Q8N3P4 1428 aa11.4□□□□□ -0.58
COMMD3-215ENST00000602574 PATL2C9JE40 543 aaKnown RBP11.4□□□□□ -0.58
COMMD3-215ENST00000602574 TCERG1O14776 1098 aaKnown RBP11.4□□□□□ -0.58
COMMD3-215ENST00000602574 TMED8Q6PL24 325 aaPredicted RBP11.4□□□□□ -0.58
COMMD3-215ENST00000602574 MS4A1P11836 297 aa11.39□□□□□ -0.59
COMMD3-215ENST00000602574 B4GALNT3Q6L9W6 998 aa11.39□□□□□ -0.59
COMMD3-215ENST00000602574 CCDC88BA6NC98 1476 aa11.38□□□□□ -0.59
COMMD3-215ENST00000602574 ESPNB1AK53 854 aa11.38□□□□□ -0.59
COMMD3-215ENST00000602574 CARD10Q9BWT7 1032 aa11.38□□□□□ -0.59
COMMD3-215ENST00000602574 CUX2O14529 1486 aa11.38□□□□□ -0.59
COMMD3-215ENST00000602574 CC2D1BQ5T0F9 858 aaKnown RBP11.38□□□□□ -0.59
COMMD3-215ENST00000602574 FAM43BQ6ZT52 329 aaPredicted RBP11.38□□□□□ -0.59
COMMD3-215ENST00000602574 RIPK4P57078 832 aa11.37□□□□□ -0.59
COMMD3-215ENST00000602574 TRIM52Q96A61 297 aa11.37□□□□□ -0.59
COMMD3-215ENST00000602574 PSMD1Q99460 953 aa11.37□□□□□ -0.59
COMMD3-215ENST00000602574 CCDC94Q9BW85 323 aaPredicted RBP11.37□□□□□ -0.59
COMMD3-215ENST00000602574 SOX12O15370 315 aa11.37□□□□□ -0.59
COMMD3-215ENST00000602574 MYCNP04198 464 aaPredicted RBP11.37□□□□□ -0.59
COMMD3-215ENST00000602574 ABCC8Q09428 1581 aa11.36□□□□□ -0.59
COMMD3-215ENST00000602574 FSD2A1L4K1 749 aa11.35□□□□□ -0.59
COMMD3-215ENST00000602574 KIAA1211Q6ZU35 1233 aa11.35□□□□□ -0.59
COMMD3-215ENST00000602574 SMARCA4P51532 1647 aa11.35□□□□□ -0.59
COMMD3-215ENST00000602574 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.35□□□□□ -0.59
COMMD3-215ENST00000602574 ISY1Q9ULR0 285 aaKnown RBP11.35□□□□□ -0.59
COMMD3-215ENST00000602574 ZBED9Q6R2W3 1325 aa11.34□□□□□ -0.59
COMMD3-215ENST00000602574 OFD1O75665 1012 aa11.33□□□□□ -0.6
COMMD3-215ENST00000602574 TSPYL1Q9H0U9 437 aa11.33□□□□□ -0.6
COMMD3-215ENST00000602574 EGFL6Q8IUX8 553 aa11.33□□□□□ -0.6
COMMD3-215ENST00000602574 DYNC1I1O14576 645 aa11.32□□□□□ -0.6
COMMD3-215ENST00000602574 BACH2Q9BYV9 841 aa11.32□□□□□ -0.6
COMMD3-215ENST00000602574 PHLDB1Q86UU1 1377 aa11.31□□□□□ -0.6
COMMD3-215ENST00000602574 PPP1R15AO75807 674 aaPredicted RBP11.3□□□□□ -0.6
COMMD3-215ENST00000602574 CLIP1P30622 1438 aa11.3□□□□□ -0.6
COMMD3-215ENST00000602574 ANP32CO43423 234 aa11.29□□□□□ -0.6
COMMD3-215ENST00000602574 UBTFP17480 764 aaKnown RBP11.29□□□□□ -0.6
COMMD3-215ENST00000602574 IRX5P78411 483 aaPredicted RBP11.29□□□□□ -0.6
COMMD3-215ENST00000602574 CC2D2BQ6DHV5 1058 aa11.29□□□□□ -0.6
COMMD3-215ENST00000602574 RNF123Q5XPI4 1314 aa11.29□□□□□ -0.6
COMMD3-215ENST00000602574 DHX57Q6P158 1386 aaKnown RBP11.29□□□□□ -0.6
COMMD3-215ENST00000602574 SOGA1O94964 1423 aa11.29□□□□□ -0.6
COMMD3-215ENST00000602574 XRCC6P12956 609 aaKnown RBP eCLIP11.28□□□□□ -0.6
COMMD3-215ENST00000602574 HSP90AB3PQ58FF7 597 aa11.28□□□□□ -0.6
COMMD3-215ENST00000602574 PPP6R1Q9UPN7 881 aa11.28□□□□□ -0.6
COMMD3-215ENST00000602574 PDE4AP27815 886 aa11.28□□□□□ -0.6
COMMD3-215ENST00000602574 NBPF11Q86T75 865 aa11.28□□□□□ -0.6
COMMD3-215ENST00000602574 ERICH3Q5RHP9 1530 aa11.27□□□□□ -0.6
COMMD3-215ENST00000602574 FRAT2O75474 233 aaPredicted RBP11.27□□□□□ -0.61
COMMD3-215ENST00000602574 NBPF1Q3BBV0 1214 aa11.27□□□□□ -0.61
COMMD3-215ENST00000602574 MRE11P49959 708 aa11.26□□□□□ -0.61
COMMD3-215ENST00000602574 MAPK8IP2Q13387 824 aaPredicted RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms