RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	RAPGEF3	O95398	923 aa		14.11	□□□□□ -0.15
SSBP4-208	ENST00000600628	TIAM1	Q13009	1591 aa		14.11	□□□□□ -0.15
SSBP4-208	ENST00000600628	EHBP1L1	Q8N3D4	1523 aa		14.1	□□□□□ -0.15
SSBP4-208	ENST00000600628	GPATCH8	Q9UKJ3	1502 aa	Known RBP	14.1	□□□□□ -0.15
SSBP4-208	ENST00000600628	POGZ	Q7Z3K3	1410 aa		14.1	□□□□□ -0.15
SSBP4-208	ENST00000600628	KDM4F	A0A1W2PPD8	638 aa		14.1	□□□□□ -0.15
SSBP4-208	ENST00000600628	ADGRL1	O94910	1474 aa		14.1	□□□□□ -0.15
SSBP4-208	ENST00000600628	KDM5C	P41229	1560 aa		14.09	□□□□□ -0.15
SSBP4-208	ENST00000600628	EFCAB2	Q5VUJ9	269 aa		14.09	□□□□□ -0.15
SSBP4-208	ENST00000600628	ARHGEF40	Q8TER5	1519 aa		14.09	□□□□□ -0.15
SSBP4-208	ENST00000600628	SCAPER	Q9BY12	1400 aa		14.08	□□□□□ -0.15
SSBP4-208	ENST00000600628	MAGI2	Q86UL8	1455 aa		14.08	□□□□□ -0.16
SSBP4-208	ENST00000600628	ABCC1	P33527	1531 aa		14.08	□□□□□ -0.16
SSBP4-208	ENST00000600628	ARHGAP5	Q13017	1502 aa		14.07	□□□□□ -0.16
SSBP4-208	ENST00000600628	ARHGEF12	Q9NZN5	1544 aa		14.07	□□□□□ -0.16
SSBP4-208	ENST00000600628	ITSN2	Q9NZM3	1697 aa		14.06	□□□□□ -0.16
SSBP4-208	ENST00000600628	SAMD9L	Q8IVG5	1584 aa		14.05	□□□□□ -0.16
SSBP4-208	ENST00000600628	MTUS2	Q5JR59	1369 aa		14.05	□□□□□ -0.16
SSBP4-208	ENST00000600628	ZNF518A	Q6AHZ1	1483 aa		14.05	□□□□□ -0.16
SSBP4-208	ENST00000600628	LRRC9	Q6ZRR7	1453 aa		14.05	□□□□□ -0.16
SSBP4-208	ENST00000600628	SIGLEC1	Q9BZZ2	1709 aa		14.04	□□□□□ -0.16
SSBP4-208	ENST00000600628	KIAA1107	Q9UPP5	1409 aa		14.03	□□□□□ -0.16
SSBP4-208	ENST00000600628	SUPT6H	Q7KZ85	1726 aa	Known RBP	14.02	□□□□□ -0.16
SSBP4-208	ENST00000600628	MLH3	Q9UHC1	1453 aa		14.02	□□□□□ -0.16
SSBP4-208	ENST00000600628	YEATS2	Q9ULM3	1422 aa		14.02	□□□□□ -0.16
SSBP4-208	ENST00000600628	ADAMTSL3	P82987	1691 aa		14.01	□□□□□ -0.17
SSBP4-208	ENST00000600628	NCOA2	Q15596	1464 aa		14.01	□□□□□ -0.17
SSBP4-208	ENST00000600628	TRAPPC8	Q9Y2L5	1435 aa		14.01	□□□□□ -0.17
SSBP4-208	ENST00000600628	RERE	Q9P2R6	1566 aa		14	□□□□□ -0.17
SSBP4-208	ENST00000600628	ZFYVE16	Q7Z3T8	1539 aa		14	□□□□□ -0.17
SSBP4-208	ENST00000600628	BCORL1	Q5H9F3	1711 aa		14	□□□□□ -0.17
SSBP4-208	ENST00000600628	HECW2	Q9P2P5	1572 aa		14	□□□□□ -0.17
SSBP4-208	ENST00000600628	KIDINS220	Q9ULH0	1771 aa		13.99	□□□□□ -0.17
SSBP4-208	ENST00000600628	CCNB3	Q8WWL7	1395 aa		13.99	□□□□□ -0.17
SSBP4-208	ENST00000600628	MBD5	Q9P267	1494 aa		13.99	□□□□□ -0.17
SSBP4-208	ENST00000600628	DIP2C	Q9Y2E4	1556 aa		13.98	□□□□□ -0.17
SSBP4-208	ENST00000600628	KANK4	Q5T7N3	995 aa	Predicted RBP	13.98	□□□□□ -0.17
SSBP4-208	ENST00000600628	PLEKHH2	Q8IVE3	1493 aa		13.98	□□□□□ -0.17
SSBP4-208	ENST00000600628	SYCP2	Q9BX26	1530 aa		13.97	□□□□□ -0.17
SSBP4-208	ENST00000600628	AFAP1	Q8N556	730 aa		13.97	□□□□□ -0.17
SSBP4-208	ENST00000600628	ATP10A	O60312	1499 aa		13.97	□□□□□ -0.17
SSBP4-208	ENST00000600628	ABCA6	Q8N139	1617 aa		13.97	□□□□□ -0.17
SSBP4-208	ENST00000600628	CFDP1	Q9UEE9	299 aa	Predicted RBP	13.95	□□□□□ -0.18
SSBP4-208	ENST00000600628	INO80	Q9ULG1	1556 aa	Predicted RBP	13.95	□□□□□ -0.18
SSBP4-208	ENST00000600628	C9orf84	Q5VXU9	1444 aa		13.94	□□□□□ -0.18
SSBP4-208	ENST00000600628	AGL	P35573	1532 aa		13.92	□□□□□ -0.18
SSBP4-208	ENST00000600628	ARHGEF5	Q12774	1597 aa		13.92	□□□□□ -0.18
SSBP4-208	ENST00000600628	ZNF644	Q9H582	1327 aa	Predicted RBP	13.91	□□□□□ -0.18
SSBP4-208	ENST00000600628	MYOM3	Q5VTT5	1437 aa		13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	MIA2	Q96PC5	1412 aa		13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	MADD	Q8WXG6	1647 aa		13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	HNRNPM	P52272	730 aa	Known RBP eCLIP	13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	CAMSAP2	Q08AD1	1489 aa		13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	PLXNC1	O60486	1568 aa		13.9	□□□□□ -0.18
SSBP4-208	ENST00000600628	ATP7A	Q04656	1500 aa		13.9	□□□□□ -0.19
SSBP4-208	ENST00000600628	RTEL1-TNFRSF6B	F6WH68	1400 aa		13.9	□□□□□ -0.19
SSBP4-208	ENST00000600628	PTPRM	P28827	1452 aa		13.87	□□□□□ -0.19
SSBP4-208	ENST00000600628	ARID4B	Q4LE39	1312 aa	Predicted RBP	13.87	□□□□□ -0.19
SSBP4-208	ENST00000600628	ZNF777	Q9ULD5	760 aa	Predicted RBP	13.86	□□□□□ -0.19
SSBP4-208	ENST00000600628	CCDC141	Q6ZP82	1450 aa		13.86	□□□□□ -0.19
SSBP4-208	ENST00000600628	ADGB	Q8N7X0	1667 aa		13.85	□□□□□ -0.19
SSBP4-208	ENST00000600628	MAST1	Q9Y2H9	1570 aa		13.85	□□□□□ -0.19
SSBP4-208	ENST00000600628	RSPH4A	Q5TD94	716 aa		13.85	□□□□□ -0.19
SSBP4-208	ENST00000600628	SPAG9	O60271	1321 aa	Known RBP	13.85	□□□□□ -0.19
SSBP4-208	ENST00000600628	FER1L4	A9Z1Z3	1794 aa		13.84	□□□□□ -0.19
SSBP4-208	ENST00000600628	TCOF1	Q13428	1488 aa	Known RBP	13.84	□□□□□ -0.19
SSBP4-208	ENST00000600628	RIMS1	Q86UR5	1692 aa	Known RBP	13.83	□□□□□ -0.2
SSBP4-208	ENST00000600628	FGD6	Q6ZV73	1430 aa		13.81	□□□□□ -0.2
SSBP4-208	ENST00000600628	PTPN23	Q9H3S7	1636 aa		13.81	□□□□□ -0.2
SSBP4-208	ENST00000600628	A2M	P01023	1474 aa		13.8	□□□□□ -0.2
SSBP4-208	ENST00000600628	CROCC2	H7BZ55	1655 aa		13.8	□□□□□ -0.2
SSBP4-208	ENST00000600628	MYT1L	Q9UL68	1186 aa		13.8	□□□□□ -0.2
SSBP4-208	ENST00000600628	APLP2	Q06481	763 aa		13.79	□□□□□ -0.2
SSBP4-208	ENST00000600628	DHX29	Q7Z478	1369 aa	Known RBP	13.79	□□□□□ -0.2
SSBP4-208	ENST00000600628	SHANK2	Q9UPX8	1470 aa		13.78	□□□□□ -0.2
SSBP4-208	ENST00000600628	DNMT1	P26358	1616 aa	Known RBP	13.78	□□□□□ -0.2
SSBP4-208	ENST00000600628	MROH2A	A6NES4	1674 aa		13.77	□□□□□ -0.21
SSBP4-208	ENST00000600628	SETD1B	Q9UPS6	1966 aa	Known RBP	13.76	□□□□□ -0.21
SSBP4-208	ENST00000600628	ABCC5	O15440	1437 aa		13.76	□□□□□ -0.21
SSBP4-208	ENST00000600628	MLEC	Q14165	292 aa		13.76	□□□□□ -0.21
SSBP4-208	ENST00000600628	C3	P01024	1663 aa		13.75	□□□□□ -0.21
SSBP4-208	ENST00000600628	FAM135A	Q9P2D6	1515 aa		13.74	□□□□□ -0.21
SSBP4-208	ENST00000600628	RNF17	Q9BXT8	1623 aa	Known RBP	13.74	□□□□□ -0.21
SSBP4-208	ENST00000600628	LMTK3	Q96Q04	1460 aa		13.74	□□□□□ -0.21
SSBP4-208	ENST00000600628	DAPK1	P53355	1430 aa		13.73	□□□□□ -0.21
SSBP4-208	ENST00000600628	CNTLN	Q9NXG0	1405 aa		13.73	□□□□□ -0.21
SSBP4-208	ENST00000600628	PPP6R1	Q9UPN7	881 aa		13.73	□□□□□ -0.21
SSBP4-208	ENST00000600628	EIF2AK4	Q9P2K8	1649 aa	Known RBP	13.72	□□□□□ -0.21
SSBP4-208	ENST00000600628	TSPY4	P0CV99	314 aa		13.71	□□□□□ -0.21
SSBP4-208	ENST00000600628	TSPY10	P0CW01	314 aa		13.71	□□□□□ -0.21
SSBP4-208	ENST00000600628	ADGRL2	O95490	1459 aa		13.71	□□□□□ -0.21
SSBP4-208	ENST00000600628	MROH1	Q8NDA8	1641 aa		13.71	□□□□□ -0.22
SSBP4-208	ENST00000600628	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	13.7	□□□□□ -0.22	1e-6	■■■■□ 22.9
SSBP4-208	ENST00000600628	KDM5D	Q9BY66	1539 aa		13.69	□□□□□ -0.22
SSBP4-208	ENST00000600628	DUOX2	Q9NRD8	1548 aa		13.69	□□□□□ -0.22
SSBP4-208	ENST00000600628	CLTC	Q00610	1675 aa	Known RBP	13.69	□□□□□ -0.22
SSBP4-208	ENST00000600628	PREX1	Q8TCU6	1659 aa		13.69	□□□□□ -0.22
SSBP4-208	ENST00000600628	NCOA1	Q15788	1441 aa		13.68	□□□□□ -0.22
SSBP4-208	ENST00000600628	NPAT	Q14207	1427 aa		13.67	□□□□□ -0.22
SSBP4-208	ENST00000600628	PLPPR3	Q6T4P5	718 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms