RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 TROQ12816 1431 aaPredicted RBP26.03■■□□□ 1.76
LSM4-206ENST00000600289 NEO1Q92859 1461 aa26.03■■□□□ 1.76
LSM4-206ENST00000600289 MYO5CQ9NQX4 1742 aa26.02■■□□□ 1.76
LSM4-206ENST00000600289 ATP1B4Q9UN42 357 aaPredicted RBP26.02■■□□□ 1.76
LSM4-206ENST00000600289 PHLDB1Q86UU1 1377 aa26.02■■□□□ 1.76
LSM4-206ENST00000600289 ARHGEF40Q8TER5 1519 aa26.02■■□□□ 1.76
LSM4-206ENST00000600289 LOC105371045A0A1W2PR82 267 aa26.01■■□□□ 1.75
LSM4-206ENST00000600289 RAPGEF3O95398 923 aa26.01■■□□□ 1.75
LSM4-206ENST00000600289 SIGLEC1Q9BZZ2 1709 aa25.99■■□□□ 1.75
LSM4-206ENST00000600289 RICTORQ6R327 1708 aa25.95■■□□□ 1.74
LSM4-206ENST00000600289 ARID4BQ4LE39 1312 aaPredicted RBP25.94■■□□□ 1.74
LSM4-206ENST00000600289 FANCAO15360 1455 aa25.91■■□□□ 1.74
LSM4-206ENST00000600289 PLCH2O75038 1416 aa25.9■■□□□ 1.74
LSM4-206ENST00000600289 FER1L4A9Z1Z3 1794 aa25.9■■□□□ 1.74
LSM4-206ENST00000600289 VPS8Q8N3P4 1428 aa25.89■■□□□ 1.74
LSM4-206ENST00000600289 PREX2Q70Z35 1606 aa25.89■■□□□ 1.74
LSM4-206ENST00000600289 CDC42BPBQ9Y5S2 1711 aa25.88■■□□□ 1.73
LSM4-206ENST00000600289 STRCQ7RTU9 1775 aa25.87■■□□□ 1.73
LSM4-206ENST00000600289 CDC42BPAQ5VT25 1732 aa25.87■■□□□ 1.73
LSM4-206ENST00000600289 PREX1Q8TCU6 1659 aa25.86■■□□□ 1.73
LSM4-206ENST00000600289 AKNAQ7Z591 1439 aa25.84■■□□□ 1.73
LSM4-206ENST00000600289 EHBP1L1Q8N3D4 1523 aa25.83■■□□□ 1.73
LSM4-206ENST00000600289 TIAM1Q13009 1591 aa25.82■■□□□ 1.72
LSM4-206ENST00000600289 PLPPR3Q6T4P5 718 aa25.81■■□□□ 1.72
LSM4-206ENST00000600289 ARHGAP5Q13017 1502 aa25.78■■□□□ 1.72
LSM4-206ENST00000600289 ZMYM4Q5VZL5 1548 aa25.78■■□□□ 1.72
LSM4-206ENST00000600289 DENND4BO75064 1496 aaPredicted RBP25.78■■□□□ 1.72
LSM4-206ENST00000600289 MAP3K1Q13233 1512 aa25.78■■□□□ 1.72
LSM4-206ENST00000600289 POGZQ7Z3K3 1410 aa25.75■■□□□ 1.71
LSM4-206ENST00000600289 MTUS2Q5JR59 1369 aa25.74■■□□□ 1.71
LSM4-206ENST00000600289 ITSN2Q9NZM3 1697 aa25.74■■□□□ 1.71
LSM4-206ENST00000600289 EFCAB2Q5VUJ9 269 aa25.73■■□□□ 1.71
LSM4-206ENST00000600289 SUPT6HQ7KZ85 1726 aaKnown RBP25.73■■□□□ 1.71
LSM4-206ENST00000600289 ZFYVE16Q7Z3T8 1539 aa25.73■■□□□ 1.71
LSM4-206ENST00000600289 YEATS2Q9ULM3 1422 aa25.71■■□□□ 1.71
LSM4-206ENST00000600289 ABCC1P33527 1531 aa25.7■■□□□ 1.7
LSM4-206ENST00000600289 GPATCH8Q9UKJ3 1502 aaKnown RBP25.69■■□□□ 1.7
LSM4-206ENST00000600289 SCAPERQ9BY12 1400 aa25.68■■□□□ 1.7
LSM4-206ENST00000600289 ARHGEF12Q9NZN5 1544 aa25.68■■□□□ 1.7
LSM4-206ENST00000600289 KDM5CP41229 1560 aa25.67■■□□□ 1.7
LSM4-206ENST00000600289 MAGI2Q86UL8 1455 aa25.66■■□□□ 1.7
LSM4-206ENST00000600289 SAMD9LQ8IVG5 1584 aa25.65■■□□□ 1.7
LSM4-206ENST00000600289 LRRC9Q6ZRR7 1453 aa25.65■■□□□ 1.7
LSM4-206ENST00000600289 ZNF518AQ6AHZ1 1483 aa25.64■■□□□ 1.69
LSM4-206ENST00000600289 LTBP4Q8N2S1 1624 aa25.63■■□□□ 1.69
LSM4-206ENST00000600289 CCNB3Q8WWL7 1395 aa25.61■■□□□ 1.69
LSM4-206ENST00000600289 NCOA2Q15596 1464 aa25.6■■□□□ 1.69
LSM4-206ENST00000600289 MLECQ14165 292 aa25.6■■□□□ 1.69
LSM4-206ENST00000600289 DMRT2Q9Y5R5 561 aa25.58■■□□□ 1.69
LSM4-206ENST00000600289 SETD1BQ9UPS6 1966 aaKnown RBP25.58■■□□□ 1.69
LSM4-206ENST00000600289 IQSEC2Q5JU85 1478 aa25.57■■□□□ 1.68
LSM4-206ENST00000600289 PLEKHH2Q8IVE3 1493 aa25.57■■□□□ 1.68
LSM4-206ENST00000600289 PTPRTO14522 1441 aa25.55■■□□□ 1.68
LSM4-206ENST00000600289 SYCP2Q9BX26 1530 aa25.54■■□□□ 1.68
LSM4-206ENST00000600289 KIAA1107Q9UPP5 1409 aa25.54■■□□□ 1.68
LSM4-206ENST00000600289 MLH3Q9UHC1 1453 aa25.53■■□□□ 1.68
LSM4-206ENST00000600289 UHRF1BP1Q6BDS2 1440 aa25.52■■□□□ 1.68
LSM4-206ENST00000600289 CEBPAP49715 358 aaPredicted RBP25.51■■□□□ 1.67
LSM4-206ENST00000600289 REREQ9P2R6 1566 aa25.5■■□□□ 1.67
LSM4-206ENST00000600289 CFDP1Q9UEE9 299 aaPredicted RBP25.5■■□□□ 1.67
LSM4-206ENST00000600289 KIDINS220Q9ULH0 1771 aa25.5■■□□□ 1.67
LSM4-206ENST00000600289 TRAPPC8Q9Y2L5 1435 aa25.5■■□□□ 1.67
LSM4-206ENST00000600289 ABCA6Q8N139 1617 aa25.48■■□□□ 1.67
LSM4-206ENST00000600289 DIP2CQ9Y2E4 1556 aa25.48■■□□□ 1.67
LSM4-206ENST00000600289 C3P01024 1663 aa25.48■■□□□ 1.67
LSM4-206ENST00000600289 C9orf84Q5VXU9 1444 aa25.46■■□□□ 1.67
LSM4-206ENST00000600289 INO80Q9ULG1 1556 aaPredicted RBP25.46■■□□□ 1.67
LSM4-206ENST00000600289 ATP10AO60312 1499 aa25.46■■□□□ 1.67
LSM4-206ENST00000600289 KANK4Q5T7N3 995 aaPredicted RBP25.45■■□□□ 1.66
LSM4-206ENST00000600289 AFAP1Q8N556 730 aa25.44■■□□□ 1.66
LSM4-206ENST00000600289 CAMSAP2Q08AD1 1489 aa25.42■■□□□ 1.66
LSM4-206ENST00000600289 MBD5Q9P267 1494 aa25.42■■□□□ 1.66
LSM4-206ENST00000600289 APLP2Q06481 763 aa25.42■■□□□ 1.66
LSM4-206ENST00000600289 ZNF777Q9ULD5 760 aaPredicted RBP25.42■■□□□ 1.66
LSM4-206ENST00000600289 ARHGEF5Q12774 1597 aa25.4■■□□□ 1.66
LSM4-206ENST00000600289 MYOM3Q5VTT5 1437 aa25.39■■□□□ 1.66
LSM4-206ENST00000600289 ATP7AQ04656 1500 aa25.39■■□□□ 1.66
LSM4-206ENST00000600289 MIA2Q96PC5 1412 aa25.38■■□□□ 1.65
LSM4-206ENST00000600289 NCOA1Q15788 1441 aa25.36■■□□□ 1.65
LSM4-206ENST00000600289 ADGBQ8N7X0 1667 aa25.36■■□□□ 1.65
LSM4-206ENST00000600289 HNRNPMP52272 730 aaKnown RBP eCLIP25.35■■□□□ 1.656e-16■□□□□ 10.9
LSM4-206ENST00000600289 AGLP35573 1532 aa25.35■■□□□ 1.65
LSM4-206ENST00000600289 ZNF644Q9H582 1327 aaPredicted RBP25.35■■□□□ 1.65
LSM4-206ENST00000600289 CCDC141Q6ZP82 1450 aa25.34■■□□□ 1.65
LSM4-206ENST00000600289 MED1Q15648 1581 aaPredicted RBP25.33■■□□□ 1.65
LSM4-206ENST00000600289 PLXNC1O60486 1568 aa25.31■■□□□ 1.64
LSM4-206ENST00000600289 RTEL1-TNFRSF6BF6WH68 1400 aa25.31■■□□□ 1.64
LSM4-206ENST00000600289 SPAG9O60271 1321 aaKnown RBP25.31■■□□□ 1.64
LSM4-206ENST00000600289 PTPN23Q9H3S7 1636 aa25.3■■□□□ 1.64
LSM4-206ENST00000600289 RSPH4AQ5TD94 716 aa25.29■■□□□ 1.64
LSM4-206ENST00000600289 MAST1Q9Y2H9 1570 aa25.29■■□□□ 1.64
LSM4-206ENST00000600289 CROCC2H7BZ55 1655 aa25.27■■□□□ 1.64
LSM4-206ENST00000600289 CAMSAP1Q5T5Y3 1602 aa25.26■■□□□ 1.63
LSM4-206ENST00000600289 MYT1LQ9UL68 1186 aa25.25■■□□□ 1.63
LSM4-206ENST00000600289 TCOF1Q13428 1488 aaKnown RBP25.25■■□□□ 1.63
LSM4-206ENST00000600289 FGD6Q6ZV73 1430 aa25.23■■□□□ 1.63
LSM4-206ENST00000600289 UBAP1LF5GYI3 381 aa25.22■■□□□ 1.63
LSM4-206ENST00000600289 A2MP01023 1474 aa25.21■■□□□ 1.63
LSM4-206ENST00000600289 DNMT1P26358 1616 aaKnown RBP25.2■■□□□ 1.62
LSM4-206ENST00000600289 ZNF335Q9H4Z2 1342 aaPredicted RBP25.19■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms