RNA–Protein interactions for RNA: ENST00000598359.5

SCAF1-203, Transcript of SR-related CTD associated factor 1, humanhuman

APPRIS ALT2 TSL 3

Gene SCAF1, Length 662 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF1-203ENST00000598359 ARHGEF40Q8TER5 1519 aa22.21■■□□□ 1.15
SCAF1-203ENST00000598359 ADAMTSL3P82987 1691 aa22.21■■□□□ 1.15
SCAF1-203ENST00000598359 PTPRMP28827 1452 aa22.21■■□□□ 1.15
SCAF1-203ENST00000598359 ARHGAP5Q13017 1502 aa22.21■■□□□ 1.15
SCAF1-203ENST00000598359 ARID4BQ4LE39 1312 aaPredicted RBP22.2■■□□□ 1.14
SCAF1-203ENST00000598359 CEP162Q5TB80 1403 aa22.19■■□□□ 1.14
SCAF1-203ENST00000598359 POGZQ7Z3K3 1410 aa22.19■■□□□ 1.14
SCAF1-203ENST00000598359 YEATS2Q9ULM3 1422 aa22.19■■□□□ 1.14
SCAF1-203ENST00000598359 ZMYM4Q5VZL5 1548 aa22.18■■□□□ 1.14
SCAF1-203ENST00000598359 LOC105371045A0A1W2PR82 267 aa22.17■■□□□ 1.14
SCAF1-203ENST00000598359 ZFYVE16Q7Z3T8 1539 aa22.16■■□□□ 1.14
SCAF1-203ENST00000598359 CDC42BPBQ9Y5S2 1711 aa22.14■■□□□ 1.14
SCAF1-203ENST00000598359 BCORL1Q5H9F3 1711 aa22.13■■□□□ 1.13
SCAF1-203ENST00000598359 SIGLEC1Q9BZZ2 1709 aa22.13■■□□□ 1.13
SCAF1-203ENST00000598359 LMTK3Q96Q04 1460 aa22.13■■□□□ 1.13
SCAF1-203ENST00000598359 PREX2Q70Z35 1606 aa22.13■■□□□ 1.13
SCAF1-203ENST00000598359 AFAP1Q8N556 730 aa22.11■■□□□ 1.13
SCAF1-203ENST00000598359 MAGI2Q86UL8 1455 aa22.1■■□□□ 1.13
SCAF1-203ENST00000598359 MADDQ8WXG6 1647 aa22.09■■□□□ 1.13
SCAF1-203ENST00000598359 CDC42BPAQ5VT25 1732 aa22.09■■□□□ 1.13
SCAF1-203ENST00000598359 ARHGEF12Q9NZN5 1544 aa22.07■■□□□ 1.12
SCAF1-203ENST00000598359 ZNF518AQ6AHZ1 1483 aa22.07■■□□□ 1.12
SCAF1-203ENST00000598359 MTUS2Q5JR59 1369 aa22.05■■□□□ 1.12
SCAF1-203ENST00000598359 MLECQ14165 292 aa22.05■■□□□ 1.12
SCAF1-203ENST00000598359 ZNF777Q9ULD5 760 aaPredicted RBP22.05■■□□□ 1.12
SCAF1-203ENST00000598359 ABCC1P33527 1531 aa22.05■■□□□ 1.12
SCAF1-203ENST00000598359 TRAPPC8Q9Y2L5 1435 aa22.05■■□□□ 1.12
SCAF1-203ENST00000598359 MYT1LQ9UL68 1186 aa22.04■■□□□ 1.12
SCAF1-203ENST00000598359 KDM5CP41229 1560 aa22.04■■□□□ 1.12
SCAF1-203ENST00000598359 GPATCH8Q9UKJ3 1502 aaKnown RBP22.03■■□□□ 1.12
SCAF1-203ENST00000598359 ATP10AO60312 1499 aa22.03■■□□□ 1.12
SCAF1-203ENST00000598359 RIMS1Q86UR5 1692 aaKnown RBP22.02■■□□□ 1.12
SCAF1-203ENST00000598359 ITSN2Q9NZM3 1697 aa22.01■■□□□ 1.11
SCAF1-203ENST00000598359 C9orf84Q5VXU9 1444 aa22■■□□□ 1.11
SCAF1-203ENST00000598359 PLPPR3Q6T4P5 718 aa22■■□□□ 1.11
SCAF1-203ENST00000598359 SAMD9LQ8IVG5 1584 aa21.99■■□□□ 1.11
SCAF1-203ENST00000598359 CCNB3Q8WWL7 1395 aa21.99■■□□□ 1.11
SCAF1-203ENST00000598359 DIP2CQ9Y2E4 1556 aa21.98■■□□□ 1.11
SCAF1-203ENST00000598359 SYCP2Q9BX26 1530 aa21.96■■□□□ 1.11
SCAF1-203ENST00000598359 ABCA6Q8N139 1617 aa21.96■■□□□ 1.11
SCAF1-203ENST00000598359 HNRNPMP52272 730 aaKnown RBP eCLIP21.96■■□□□ 1.115e-6■■□□□ 13.2
SCAF1-203ENST00000598359 CFDP1Q9UEE9 299 aaPredicted RBP21.96■■□□□ 1.11
SCAF1-203ENST00000598359 EHBP1L1Q8N3D4 1523 aa21.96■■□□□ 1.11
SCAF1-203ENST00000598359 HSPA2P54652 639 aa21.95■■□□□ 1.1
SCAF1-203ENST00000598359 CERKQ8TCT0 537 aa21.95■■□□□ 1.1
SCAF1-203ENST00000598359 MLH3Q9UHC1 1453 aa21.95■■□□□ 1.1
SCAF1-203ENST00000598359 TIAM1Q13009 1591 aa21.94■■□□□ 1.1
SCAF1-203ENST00000598359 VPS8Q8N3P4 1428 aa21.92■■□□□ 1.1
SCAF1-203ENST00000598359 FER1L4A9Z1Z3 1794 aa21.92■■□□□ 1.1
SCAF1-203ENST00000598359 ZNF644Q9H582 1327 aaPredicted RBP21.91■■□□□ 1.1
SCAF1-203ENST00000598359 ILDR2Q71H61 639 aa21.91■■□□□ 1.1
SCAF1-203ENST00000598359 KIDINS220Q9ULH0 1771 aa21.9■■□□□ 1.1
SCAF1-203ENST00000598359 SOCS7O14512 581 aa21.89■■□□□ 1.09
SCAF1-203ENST00000598359 DISP3Q9P2K9 1392 aa21.88■■□□□ 1.09
SCAF1-203ENST00000598359 REREQ9P2R6 1566 aa21.87■■□□□ 1.09
SCAF1-203ENST00000598359 SPAG9O60271 1321 aaKnown RBP21.86■■□□□ 1.09
SCAF1-203ENST00000598359 NCOA2Q15596 1464 aa21.86■■□□□ 1.09
SCAF1-203ENST00000598359 KIAA1107Q9UPP5 1409 aa21.86■■□□□ 1.09
SCAF1-203ENST00000598359 PLEKHH2Q8IVE3 1493 aa21.85■■□□□ 1.09
SCAF1-203ENST00000598359 CEBPAP49715 358 aaPredicted RBP21.84■■□□□ 1.09
SCAF1-203ENST00000598359 SUPT6HQ7KZ85 1726 aaKnown RBP21.83■■□□□ 1.09
SCAF1-203ENST00000598359 ATP7AQ04656 1500 aa21.81■■□□□ 1.08
SCAF1-203ENST00000598359 LRRC9Q6ZRR7 1453 aa21.81■■□□□ 1.08
SCAF1-203ENST00000598359 AGLP35573 1532 aa21.8■■□□□ 1.08
SCAF1-203ENST00000598359 INO80Q9ULG1 1556 aaPredicted RBP21.8■■□□□ 1.08
SCAF1-203ENST00000598359 KANK4Q5T7N3 995 aaPredicted RBP21.8■■□□□ 1.08
SCAF1-203ENST00000598359 MBD5Q9P267 1494 aa21.79■■□□□ 1.08
SCAF1-203ENST00000598359 CAMSAP2Q08AD1 1489 aa21.76■■□□□ 1.07
SCAF1-203ENST00000598359 A2MP01023 1474 aa21.73■■□□□ 1.07
SCAF1-203ENST00000598359 ESF1Q9H501 851 aaKnown RBP21.72■■□□□ 1.07
SCAF1-203ENST00000598359 PREX1Q8TCU6 1659 aa21.72■■□□□ 1.07
SCAF1-203ENST00000598359 MAP3K1Q13233 1512 aa21.71■■□□□ 1.07
SCAF1-203ENST00000598359 PLXNC1O60486 1568 aa21.71■■□□□ 1.07
SCAF1-203ENST00000598359 SPATA31D1Q6ZQQ2 1576 aa21.7■■□□□ 1.06
SCAF1-203ENST00000598359 STRCQ7RTU9 1775 aa21.7■■□□□ 1.06
SCAF1-203ENST00000598359 C3P01024 1663 aa21.69■■□□□ 1.06
SCAF1-203ENST00000598359 CCDC141Q6ZP82 1450 aa21.69■■□□□ 1.06
SCAF1-203ENST00000598359 ADGBQ8N7X0 1667 aa21.66■■□□□ 1.06
SCAF1-203ENST00000598359 RTEL1-TNFRSF6BF6WH68 1400 aa21.66■■□□□ 1.06
SCAF1-203ENST00000598359 GGT6Q6P531 493 aa21.66■■□□□ 1.06
SCAF1-203ENST00000598359 SETD1BQ9UPS6 1966 aaKnown RBP21.64■■□□□ 1.05
SCAF1-203ENST00000598359 CNTLNQ9NXG0 1405 aa21.63■■□□□ 1.05
SCAF1-203ENST00000598359 APLP2Q06481 763 aa21.63■■□□□ 1.05
SCAF1-203ENST00000598359 DMRT2Q9Y5R5 561 aa21.63■■□□□ 1.05
SCAF1-203ENST00000598359 MYOM3Q5VTT5 1437 aa21.63■■□□□ 1.05
SCAF1-203ENST00000598359 ARHGEF5Q12774 1597 aa21.62■■□□□ 1.05
SCAF1-203ENST00000598359 CLTCQ00610 1675 aaKnown RBP21.62■■□□□ 1.05
SCAF1-203ENST00000598359 UHRF1BP1Q6BDS2 1440 aa21.62■■□□□ 1.05
SCAF1-203ENST00000598359 DHX29Q7Z478 1369 aaKnown RBP21.61■■□□□ 1.05
SCAF1-203ENST00000598359 ZMYM3Q14202 1370 aa21.6■■□□□ 1.05
SCAF1-203ENST00000598359 RSPH4AQ5TD94 716 aa21.59■■□□□ 1.05
SCAF1-203ENST00000598359 TSPY4P0CV99 314 aa21.58■■□□□ 1.05
SCAF1-203ENST00000598359 TSPY10P0CW01 314 aa21.58■■□□□ 1.05
SCAF1-203ENST00000598359 MROH2AA6NES4 1674 aa21.58■■□□□ 1.05
SCAF1-203ENST00000598359 MIA2Q96PC5 1412 aa21.57■■□□□ 1.04
SCAF1-203ENST00000598359 KIF3BO15066 747 aa21.57■■□□□ 1.04
SCAF1-203ENST00000598359 NPATQ14207 1427 aa21.51■■□□□ 1.03
SCAF1-203ENST00000598359 MAST1Q9Y2H9 1570 aa21.51■■□□□ 1.03
SCAF1-203ENST00000598359 PTPRKQ15262 1439 aa21.5■■□□□ 1.03
SCAF1-203ENST00000598359 PTPN23Q9H3S7 1636 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms