RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 SCAPERQ9BY12 1400 aa17.1■□□□□ 0.33
TRIM28-210ENST00000597618 PLCH2O75038 1416 aa17.09■□□□□ 0.33
TRIM28-210ENST00000597618 ARHGEF12Q9NZN5 1544 aa17.09■□□□□ 0.33
TRIM28-210ENST00000597618 C9orf84Q5VXU9 1444 aa17.08■□□□□ 0.32
TRIM28-210ENST00000597618 ATP10AO60312 1499 aa17.07■□□□□ 0.32
TRIM28-210ENST00000597618 PREX1Q8TCU6 1659 aa17.06■□□□□ 0.32
TRIM28-210ENST00000597618 CDK13Q14004 1512 aaKnown RBP17.06■□□□□ 0.32
TRIM28-210ENST00000597618 DMRT2Q9Y5R5 561 aa17.04■□□□□ 0.32
TRIM28-210ENST00000597618 EFCAB2Q5VUJ9 269 aa17.02■□□□□ 0.32
TRIM28-210ENST00000597618 DISP3Q9P2K9 1392 aa17.02■□□□□ 0.31
TRIM28-210ENST00000597618 UHRF1BP1Q6BDS2 1440 aa17.01■□□□□ 0.31
TRIM28-210ENST00000597618 ZNF518AQ6AHZ1 1483 aa17■□□□□ 0.31
TRIM28-210ENST00000597618 CEBPAP49715 358 aaPredicted RBP16.99■□□□□ 0.31
TRIM28-210ENST00000597618 MYO5CQ9NQX4 1742 aa16.98■□□□□ 0.31
TRIM28-210ENST00000597618 CDK11AQ9UQ88 783 aaPredicted RBP16.97■□□□□ 0.31
TRIM28-210ENST00000597618 KDM5CP41229 1560 aa16.97■□□□□ 0.31
TRIM28-210ENST00000597618 FMN1Q68DA7 1419 aa16.96■□□□□ 0.31
TRIM28-210ENST00000597618 SOCS7O14512 581 aa16.96■□□□□ 0.31
TRIM28-210ENST00000597618 STRCQ7RTU9 1775 aa16.95■□□□□ 0.3
TRIM28-210ENST00000597618 ILDR2Q71H61 639 aa16.95■□□□□ 0.3
TRIM28-210ENST00000597618 KIF14Q15058 1648 aa16.95■□□□□ 0.3
TRIM28-210ENST00000597618 ARHGAP5Q13017 1502 aa16.94■□□□□ 0.3
TRIM28-210ENST00000597618 PTPRTO14522 1441 aa16.94■□□□□ 0.3
TRIM28-210ENST00000597618 REREQ9P2R6 1566 aa16.94■□□□□ 0.3
TRIM28-210ENST00000597618 ATP1B4Q9UN42 357 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-210ENST00000597618 AFAP1Q8N556 730 aa16.92■□□□□ 0.3
TRIM28-210ENST00000597618 CLIP1P30622 1438 aa16.92■□□□□ 0.3
TRIM28-210ENST00000597618 TROQ12816 1431 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-210ENST00000597618 DIP2CQ9Y2E4 1556 aa16.92■□□□□ 0.3
TRIM28-210ENST00000597618 MYT1LQ9UL68 1186 aa16.91■□□□□ 0.3
TRIM28-210ENST00000597618 SETD1BQ9UPS6 1966 aaKnown RBP16.91■□□□□ 0.3
TRIM28-210ENST00000597618 SPATA31D1Q6ZQQ2 1576 aa16.9■□□□□ 0.3
TRIM28-210ENST00000597618 MLH3Q9UHC1 1453 aa16.89■□□□□ 0.29
TRIM28-210ENST00000597618 AGLP35573 1532 aa16.88■□□□□ 0.29
TRIM28-210ENST00000597618 ESF1Q9H501 851 aaKnown RBP16.88■□□□□ 0.29
TRIM28-210ENST00000597618 IQSEC2Q5JU85 1478 aa16.87■□□□□ 0.29
TRIM28-210ENST00000597618 ABCA6Q8N139 1617 aa16.87■□□□□ 0.29
TRIM28-210ENST00000597618 TRAPPC8Q9Y2L5 1435 aa16.87■□□□□ 0.29
TRIM28-210ENST00000597618 ARHGAP35Q9NRY4 1499 aa16.86■□□□□ 0.29
TRIM28-210ENST00000597618 C3P01024 1663 aa16.86■□□□□ 0.29
TRIM28-210ENST00000597618 NCOA1Q15788 1441 aa16.85■□□□□ 0.29
TRIM28-210ENST00000597618 CNTLNQ9NXG0 1405 aa16.85■□□□□ 0.29
TRIM28-210ENST00000597618 LTBP4Q8N2S1 1624 aa16.85■□□□□ 0.29
TRIM28-210ENST00000597618 UBTFP17480 764 aaKnown RBP16.84■□□□□ 0.29
TRIM28-210ENST00000597618 ABCC1P33527 1531 aa16.84■□□□□ 0.29
TRIM28-210ENST00000597618 PREX2Q70Z35 1606 aa16.81■□□□□ 0.28
TRIM28-210ENST00000597618 CDC42BPBQ9Y5S2 1711 aa16.8■□□□□ 0.28
TRIM28-210ENST00000597618 NPATQ14207 1427 aa16.79■□□□□ 0.28
TRIM28-210ENST00000597618 ITSN2Q9NZM3 1697 aa16.78■□□□□ 0.28
TRIM28-210ENST00000597618 EHMT2Q96KQ7 1210 aa16.77■□□□□ 0.28
TRIM28-210ENST00000597618 CCDC18Q5T9S5 1454 aa16.77■□□□□ 0.28
TRIM28-210ENST00000597618 CAMSAP1Q5T5Y3 1602 aa16.77■□□□□ 0.27
TRIM28-210ENST00000597618 KIDINS220Q9ULH0 1771 aa16.76■□□□□ 0.27
TRIM28-210ENST00000597618 MROH2AA6NES4 1674 aa16.75■□□□□ 0.27
TRIM28-210ENST00000597618 LRRIQ1Q96JM4 1722 aa16.75■□□□□ 0.27
TRIM28-210ENST00000597618 CASKIN1Q8WXD9 1431 aa16.72■□□□□ 0.27
TRIM28-210ENST00000597618 ZMYM3Q14202 1370 aa16.72■□□□□ 0.27
TRIM28-210ENST00000597618 SAMD9LQ8IVG5 1584 aa16.72■□□□□ 0.27
TRIM28-210ENST00000597618 PLA2R1Q13018 1463 aa16.71■□□□□ 0.27
TRIM28-210ENST00000597618 ZNF335Q9H4Z2 1342 aaPredicted RBP16.7■□□□□ 0.26
TRIM28-210ENST00000597618 NCKAP5LQ9HCH0 1330 aa16.7■□□□□ 0.26
TRIM28-210ENST00000597618 UBAP1LF5GYI3 381 aa16.69■□□□□ 0.26
TRIM28-210ENST00000597618 PKD2Q13563 968 aa16.69■□□□□ 0.26
TRIM28-210ENST00000597618 SYCP2Q9BX26 1530 aa16.69■□□□□ 0.26
TRIM28-210ENST00000597618 SPAG9O60271 1321 aaKnown RBP16.69■□□□□ 0.26
TRIM28-210ENST00000597618 CDC42BPAQ5VT25 1732 aa16.68■□□□□ 0.26
TRIM28-210ENST00000597618 ZNF142P52746 1687 aaPredicted RBP16.68■□□□□ 0.26
TRIM28-210ENST00000597618 MYO3AQ8NEV4 1616 aa16.67■□□□□ 0.26
TRIM28-210ENST00000597618 ZNF777Q9ULD5 760 aaPredicted RBP16.67■□□□□ 0.26
TRIM28-210ENST00000597618 TCOF1Q13428 1488 aaKnown RBP16.67■□□□□ 0.26
TRIM28-210ENST00000597618 PLXNC1O60486 1568 aa16.66■□□□□ 0.26
TRIM28-210ENST00000597618 CEP170BQ9Y4F5 1589 aaPredicted RBP16.66■□□□□ 0.26
TRIM28-210ENST00000597618 ATP7AQ04656 1500 aa16.65■□□□□ 0.26
TRIM28-210ENST00000597618 PTPRKQ15262 1439 aa16.65■□□□□ 0.26
TRIM28-210ENST00000597618 FYCO1Q9BQS8 1478 aa16.65■□□□□ 0.26
TRIM28-210ENST00000597618 KIAA1107Q9UPP5 1409 aa16.64■□□□□ 0.25
TRIM28-210ENST00000597618 A2MP01023 1474 aa16.64■□□□□ 0.25
TRIM28-210ENST00000597618 PLEKHH2Q8IVE3 1493 aa16.64■□□□□ 0.25
TRIM28-210ENST00000597618 CLTCQ00610 1675 aaKnown RBP16.64■□□□□ 0.25
TRIM28-210ENST00000597618 SUPT6HQ7KZ85 1726 aaKnown RBP16.64■□□□□ 0.25
TRIM28-210ENST00000597618 GPATCH8Q9UKJ3 1502 aaKnown RBP16.64■□□□□ 0.25
TRIM28-210ENST00000597618 INO80Q9ULG1 1556 aaPredicted RBP16.63■□□□□ 0.25
TRIM28-210ENST00000597618 HNRNPMP52272 730 aaKnown RBP eCLIP16.62■□□□□ 0.25
TRIM28-210ENST00000597618 PPP6R1Q9UPN7 881 aa16.62■□□□□ 0.25
TRIM28-210ENST00000597618 GGT6Q6P531 493 aa16.59■□□□□ 0.25
TRIM28-210ENST00000597618 CFDP1Q9UEE9 299 aaPredicted RBP16.59■□□□□ 0.25
TRIM28-210ENST00000597618 A2ML1A8K2U0 1454 aa16.58■□□□□ 0.24
TRIM28-210ENST00000597618 CCNB3Q8WWL7 1395 aa16.57■□□□□ 0.24
TRIM28-210ENST00000597618 CPS1P31327 1500 aa16.55■□□□□ 0.24
TRIM28-210ENST00000597618 ADGBQ8N7X0 1667 aa16.54■□□□□ 0.24
TRIM28-210ENST00000597618 DNMT1P26358 1616 aaKnown RBP16.54■□□□□ 0.24
TRIM28-210ENST00000597618 MED1Q15648 1581 aaPredicted RBP16.54■□□□□ 0.24
TRIM28-210ENST00000597618 SCAF1Q9H7N4 1312 aaKnown RBP16.53■□□□□ 0.24
TRIM28-210ENST00000597618 TOM1O60784 492 aa16.53■□□□□ 0.24
TRIM28-210ENST00000597618 HSPA1LP34931 641 aa16.53■□□□□ 0.24
TRIM28-210ENST00000597618 PIP4K2BP78356 416 aa16.51■□□□□ 0.23
TRIM28-210ENST00000597618 CHIC1Q5VXU3 224 aa16.51■□□□□ 0.23
TRIM28-210ENST00000597618 MTUS2Q5JR59 1369 aa16.51■□□□□ 0.23
TRIM28-210ENST00000597618 TNRQ92752 1358 aa16.51■□□□□ 0.23
TRIM28-210ENST00000597618 SHANK2Q9UPX8 1470 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms