RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 ADAMTSL3P82987 1691 aa21.31■■□□□ 1
LIG1-212ENST00000596549 BCORL1Q5H9F3 1711 aa21.31■■□□□ 1
LIG1-212ENST00000596549 POGZQ7Z3K3 1410 aa21.28■■□□□ 1
LIG1-212ENST00000596549 ARHGAP5Q13017 1502 aa21.27■■□□□ 1
LIG1-212ENST00000596549 ZFYVE16Q7Z3T8 1539 aa21.26■□□□□ 0.99
LIG1-212ENST00000596549 ITSN2Q9NZM3 1697 aa21.24■□□□□ 0.99
LIG1-212ENST00000596549 CEP162Q5TB80 1403 aa21.24■□□□□ 0.99
LIG1-212ENST00000596549 CDK11AQ9UQ88 783 aaPredicted RBP21.24■□□□□ 0.99
LIG1-212ENST00000596549 MADDQ8WXG6 1647 aa21.24■□□□□ 0.99
LIG1-212ENST00000596549 KDM5CP41229 1560 aa21.23■□□□□ 0.99
LIG1-212ENST00000596549 SCAPERQ9BY12 1400 aa21.22■□□□□ 0.99
LIG1-212ENST00000596549 YEATS2Q9ULM3 1422 aa21.22■□□□□ 0.99
LIG1-212ENST00000596549 ABCC1P33527 1531 aa21.22■□□□□ 0.99
LIG1-212ENST00000596549 MAGI2Q86UL8 1455 aa21.2■□□□□ 0.98
LIG1-212ENST00000596549 HECW2Q9P2P5 1572 aa21.19■□□□□ 0.98
LIG1-212ENST00000596549 RIMS1Q86UR5 1692 aaKnown RBP21.18■□□□□ 0.98
LIG1-212ENST00000596549 SAMD9LQ8IVG5 1584 aa21.16■□□□□ 0.98
LIG1-212ENST00000596549 ZNF518AQ6AHZ1 1483 aa21.16■□□□□ 0.98
LIG1-212ENST00000596549 ABCA6Q8N139 1617 aa21.15■□□□□ 0.98
LIG1-212ENST00000596549 ARHGEF12Q9NZN5 1544 aa21.14■□□□□ 0.98
LIG1-212ENST00000596549 EFCAB2Q5VUJ9 269 aa21.14■□□□□ 0.97
LIG1-212ENST00000596549 FER1L4A9Z1Z3 1794 aa21.14■□□□□ 0.97
LIG1-212ENST00000596549 DIP2CQ9Y2E4 1556 aa21.14■□□□□ 0.97
LIG1-212ENST00000596549 EHBP1L1Q8N3D4 1523 aa21.14■□□□□ 0.97
LIG1-212ENST00000596549 PTPRMP28827 1452 aa21.13■□□□□ 0.97
LIG1-212ENST00000596549 TIAM1Q13009 1591 aa21.11■□□□□ 0.97
LIG1-212ENST00000596549 KIDINS220Q9ULH0 1771 aa21.1■□□□□ 0.97
LIG1-212ENST00000596549 GPATCH8Q9UKJ3 1502 aaKnown RBP21.09■□□□□ 0.97
LIG1-212ENST00000596549 REREQ9P2R6 1566 aa21.09■□□□□ 0.97
LIG1-212ENST00000596549 SYCP2Q9BX26 1530 aa21.09■□□□□ 0.97
LIG1-212ENST00000596549 C9orf84Q5VXU9 1444 aa21.08■□□□□ 0.97
LIG1-212ENST00000596549 TRAPPC8Q9Y2L5 1435 aa21.07■□□□□ 0.96
LIG1-212ENST00000596549 ATP10AO60312 1499 aa21.06■□□□□ 0.96
LIG1-212ENST00000596549 ARID4BQ4LE39 1312 aaPredicted RBP21.04■□□□□ 0.96
LIG1-212ENST00000596549 MLH3Q9UHC1 1453 aa21.04■□□□□ 0.96
LIG1-212ENST00000596549 SUPT6HQ7KZ85 1726 aaKnown RBP21.04■□□□□ 0.96
LIG1-212ENST00000596549 MTUS2Q5JR59 1369 aa21.03■□□□□ 0.96
LIG1-212ENST00000596549 INO80Q9ULG1 1556 aaPredicted RBP21.02■□□□□ 0.96
LIG1-212ENST00000596549 LOC105371045A0A1W2PR82 267 aa21.01■□□□□ 0.95
LIG1-212ENST00000596549 ILDR1Q86SU0 546 aaPredicted RBP21.01■□□□□ 0.95
LIG1-212ENST00000596549 AFAP1Q8N556 730 aa21.01■□□□□ 0.95
LIG1-212ENST00000596549 VPS8Q8N3P4 1428 aa21.01■□□□□ 0.95
LIG1-212ENST00000596549 CCNB3Q8WWL7 1395 aa20.96■□□□□ 0.95
LIG1-212ENST00000596549 AGLP35573 1532 aa20.95■□□□□ 0.94
LIG1-212ENST00000596549 ATP7AQ04656 1500 aa20.95■□□□□ 0.94
LIG1-212ENST00000596549 PLEKHH2Q8IVE3 1493 aa20.94■□□□□ 0.94
LIG1-212ENST00000596549 LMTK3Q96Q04 1460 aa20.94■□□□□ 0.94
LIG1-212ENST00000596549 NCOA2Q15596 1464 aa20.94■□□□□ 0.94
LIG1-212ENST00000596549 PLXNC1O60486 1568 aa20.93■□□□□ 0.94
LIG1-212ENST00000596549 KIAA1107Q9UPP5 1409 aa20.93■□□□□ 0.94
LIG1-212ENST00000596549 C3P01024 1663 aa20.91■□□□□ 0.94
LIG1-212ENST00000596549 ADGBQ8N7X0 1667 aa20.91■□□□□ 0.94
LIG1-212ENST00000596549 ZNF777Q9ULD5 760 aaPredicted RBP20.91■□□□□ 0.94
LIG1-212ENST00000596549 MLECQ14165 292 aa20.9■□□□□ 0.94
LIG1-212ENST00000596549 PREX1Q8TCU6 1659 aa20.89■□□□□ 0.94
LIG1-212ENST00000596549 LRRC9Q6ZRR7 1453 aa20.89■□□□□ 0.94
LIG1-212ENST00000596549 MAP3K1Q13233 1512 aa20.88■□□□□ 0.93
LIG1-212ENST00000596549 MBD5Q9P267 1494 aa20.88■□□□□ 0.93
LIG1-212ENST00000596549 CFDP1Q9UEE9 299 aaPredicted RBP20.88■□□□□ 0.93
LIG1-212ENST00000596549 CAMSAP2Q08AD1 1489 aa20.88■□□□□ 0.93
LIG1-212ENST00000596549 HNRNPMP52272 730 aaKnown RBP eCLIP20.85■□□□□ 0.93
LIG1-212ENST00000596549 MYT1LQ9UL68 1186 aa20.85■□□□□ 0.93
LIG1-212ENST00000596549 MROH2AA6NES4 1674 aa20.85■□□□□ 0.93
LIG1-212ENST00000596549 ZNF644Q9H582 1327 aaPredicted RBP20.83■□□□□ 0.93
LIG1-212ENST00000596549 SPAG9O60271 1321 aaKnown RBP20.81■□□□□ 0.92
LIG1-212ENST00000596549 ARHGEF5Q12774 1597 aa20.81■□□□□ 0.92
LIG1-212ENST00000596549 CLTCQ00610 1675 aaKnown RBP20.8■□□□□ 0.92
LIG1-212ENST00000596549 A2MP01023 1474 aa20.8■□□□□ 0.92
LIG1-212ENST00000596549 CCDC141Q6ZP82 1450 aa20.8■□□□□ 0.92
LIG1-212ENST00000596549 PLPPR3Q6T4P5 718 aa20.79■□□□□ 0.92
LIG1-212ENST00000596549 KANK4Q5T7N3 995 aaPredicted RBP20.75■□□□□ 0.91
LIG1-212ENST00000596549 RTEL1-TNFRSF6BF6WH68 1400 aa20.75■□□□□ 0.91
LIG1-212ENST00000596549 CROCC2H7BZ55 1655 aa20.74■□□□□ 0.91
LIG1-212ENST00000596549 MAST1Q9Y2H9 1570 aa20.73■□□□□ 0.91
LIG1-212ENST00000596549 CEBPAP49715 358 aaPredicted RBP20.72■□□□□ 0.91
LIG1-212ENST00000596549 MYOM3Q5VTT5 1437 aa20.71■□□□□ 0.91
LIG1-212ENST00000596549 CNTLNQ9NXG0 1405 aa20.71■□□□□ 0.91
LIG1-212ENST00000596549 STRCQ7RTU9 1775 aa20.7■□□□□ 0.9
LIG1-212ENST00000596549 SETD1BQ9UPS6 1966 aaKnown RBP20.7■□□□□ 0.9
LIG1-212ENST00000596549 MYO3AQ8NEV4 1616 aa20.68■□□□□ 0.9
LIG1-212ENST00000596549 HSPA2P54652 639 aa20.68■□□□□ 0.9
LIG1-212ENST00000596549 PTPN23Q9H3S7 1636 aa20.67■□□□□ 0.9
LIG1-212ENST00000596549 ZNF142P52746 1687 aaPredicted RBP20.67■□□□□ 0.9
LIG1-212ENST00000596549 UHRF1BP1Q6BDS2 1440 aa20.67■□□□□ 0.9
LIG1-212ENST00000596549 MIA2Q96PC5 1412 aa20.67■□□□□ 0.9
LIG1-212ENST00000596549 RNF17Q9BXT8 1623 aaKnown RBP20.64■□□□□ 0.89
LIG1-212ENST00000596549 EIF2AK4Q9P2K8 1649 aaKnown RBP20.64■□□□□ 0.89
LIG1-212ENST00000596549 DHX29Q7Z478 1369 aaKnown RBP20.62■□□□□ 0.89
LIG1-212ENST00000596549 DNMT1P26358 1616 aaKnown RBP20.62■□□□□ 0.89
LIG1-212ENST00000596549 FAM135AQ9P2D6 1515 aa20.62■□□□□ 0.89
LIG1-212ENST00000596549 NPATQ14207 1427 aa20.61■□□□□ 0.89
LIG1-212ENST00000596549 KDM5DQ9BY66 1539 aa20.61■□□□□ 0.89
LIG1-212ENST00000596549 MROH1Q8NDA8 1641 aa20.6■□□□□ 0.89
LIG1-212ENST00000596549 ZC3H13Q5T200 1668 aaKnown RBP20.59■□□□□ 0.89
LIG1-212ENST00000596549 ESF1Q9H501 851 aaKnown RBP20.59■□□□□ 0.89
LIG1-212ENST00000596549 ZMYM3Q14202 1370 aa20.59■□□□□ 0.89
LIG1-212ENST00000596549 TCOF1Q13428 1488 aaKnown RBP20.58■□□□□ 0.89
LIG1-212ENST00000596549 RSPH4AQ5TD94 716 aa20.58■□□□□ 0.89
LIG1-212ENST00000596549 SHANK2Q9UPX8 1470 aa20.57■□□□□ 0.88
LIG1-212ENST00000596549 PTPRKQ15262 1439 aa20.57■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms