RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 HSPA2P54652 639 aa16.6■□□□□ 0.25
LIG1-209ENST00000596104 UBTFP17480 764 aaKnown RBP16.59■□□□□ 0.25
LIG1-209ENST00000596104 MLECQ14165 292 aa16.58■□□□□ 0.24
LIG1-209ENST00000596104 EFCAB2Q5VUJ9 269 aa16.58■□□□□ 0.24
LIG1-209ENST00000596104 PLPPR3Q6T4P5 718 aa16.57■□□□□ 0.24
LIG1-209ENST00000596104 EHMT2Q96KQ7 1210 aa16.57■□□□□ 0.24
LIG1-209ENST00000596104 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
LIG1-209ENST00000596104 ATP10AO60312 1499 aa16.56■□□□□ 0.24
LIG1-209ENST00000596104 CDK11AQ9UQ88 783 aaPredicted RBP16.56■□□□□ 0.24
LIG1-209ENST00000596104 ARHGEF12Q9NZN5 1544 aa16.55■□□□□ 0.24
LIG1-209ENST00000596104 TROQ12816 1431 aaPredicted RBP16.55■□□□□ 0.24
LIG1-209ENST00000596104 C9orf84Q5VXU9 1444 aa16.55■□□□□ 0.24
LIG1-209ENST00000596104 KIF14Q15058 1648 aa16.53■□□□□ 0.24
LIG1-209ENST00000596104 ZNF518AQ6AHZ1 1483 aa16.52■□□□□ 0.23
LIG1-209ENST00000596104 CHIC1Q5VXU3 224 aa16.51■□□□□ 0.23
LIG1-209ENST00000596104 AFAP1Q8N556 730 aa16.51■□□□□ 0.23
LIG1-209ENST00000596104 KDM5CP41229 1560 aa16.5■□□□□ 0.23
LIG1-209ENST00000596104 MYO5CQ9NQX4 1742 aa16.5■□□□□ 0.23
LIG1-209ENST00000596104 CLIP1P30622 1438 aa16.49■□□□□ 0.23
LIG1-209ENST00000596104 ARHGAP5Q13017 1502 aa16.49■□□□□ 0.23
LIG1-209ENST00000596104 FER1L4A9Z1Z3 1794 aa16.49■□□□□ 0.23
LIG1-209ENST00000596104 CEBPAP49715 358 aaPredicted RBP16.48■□□□□ 0.23
LIG1-209ENST00000596104 CERKQ8TCT0 537 aa16.46■□□□□ 0.23
LIG1-209ENST00000596104 MLH3Q9UHC1 1453 aa16.45■□□□□ 0.22
LIG1-209ENST00000596104 DIP2CQ9Y2E4 1556 aa16.44■□□□□ 0.22
LIG1-209ENST00000596104 REREQ9P2R6 1566 aa16.43■□□□□ 0.22
LIG1-209ENST00000596104 CASKIN1Q8WXD9 1431 aa16.43■□□□□ 0.22
LIG1-209ENST00000596104 TRAPPC8Q9Y2L5 1435 aa16.43■□□□□ 0.22
LIG1-209ENST00000596104 LRRIQ1Q96JM4 1722 aa16.42■□□□□ 0.22
LIG1-209ENST00000596104 MYT1LQ9UL68 1186 aa16.41■□□□□ 0.22
LIG1-209ENST00000596104 PREX1Q8TCU6 1659 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 ABCC1P33527 1531 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 AGLP35573 1532 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 UHRF1BP1Q6BDS2 1440 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 ABCA6Q8N139 1617 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 CCDC18Q5T9S5 1454 aa16.4■□□□□ 0.22
LIG1-209ENST00000596104 CDC42BPBQ9Y5S2 1711 aa16.39■□□□□ 0.21
LIG1-209ENST00000596104 PREX2Q70Z35 1606 aa16.38■□□□□ 0.21
LIG1-209ENST00000596104 DMRT2Q9Y5R5 561 aa16.36■□□□□ 0.21
LIG1-209ENST00000596104 FYCO1Q9BQS8 1478 aa16.34■□□□□ 0.21
LIG1-209ENST00000596104 STRCQ7RTU9 1775 aa16.33■□□□□ 0.21
LIG1-209ENST00000596104 ITSN2Q9NZM3 1697 aa16.33■□□□□ 0.2
LIG1-209ENST00000596104 PTPRTO14522 1441 aa16.32■□□□□ 0.2
LIG1-209ENST00000596104 KIDINS220Q9ULH0 1771 aa16.31■□□□□ 0.2
LIG1-209ENST00000596104 GPATCH8Q9UKJ3 1502 aaKnown RBP16.31■□□□□ 0.2
LIG1-209ENST00000596104 CNTLNQ9NXG0 1405 aa16.31■□□□□ 0.2
LIG1-209ENST00000596104 ESF1Q9H501 851 aaKnown RBP16.31■□□□□ 0.2
LIG1-209ENST00000596104 C3P01024 1663 aa16.3■□□□□ 0.2
LIG1-209ENST00000596104 SAMD9LQ8IVG5 1584 aa16.3■□□□□ 0.2
LIG1-209ENST00000596104 SETD1BQ9UPS6 1966 aaKnown RBP16.29■□□□□ 0.2
LIG1-209ENST00000596104 CDC42BPAQ5VT25 1732 aa16.29■□□□□ 0.2
LIG1-209ENST00000596104 ZNF777Q9ULD5 760 aaPredicted RBP16.29■□□□□ 0.2
LIG1-209ENST00000596104 SYCP2Q9BX26 1530 aa16.28■□□□□ 0.2
LIG1-209ENST00000596104 SPAG9O60271 1321 aaKnown RBP16.27■□□□□ 0.2
LIG1-209ENST00000596104 HNRNPMP52272 730 aaKnown RBP eCLIP16.27■□□□□ 0.2
LIG1-209ENST00000596104 NCOA1Q15788 1441 aa16.27■□□□□ 0.19
LIG1-209ENST00000596104 KIAA1107Q9UPP5 1409 aa16.27■□□□□ 0.19
LIG1-209ENST00000596104 NPATQ14207 1427 aa16.26■□□□□ 0.19
LIG1-209ENST00000596104 ZMYM3Q14202 1370 aa16.25■□□□□ 0.19
LIG1-209ENST00000596104 LTBP4Q8N2S1 1624 aa16.23■□□□□ 0.19
LIG1-209ENST00000596104 PLEKHH2Q8IVE3 1493 aa16.23■□□□□ 0.19
LIG1-209ENST00000596104 CFDP1Q9UEE9 299 aaPredicted RBP16.23■□□□□ 0.19
LIG1-209ENST00000596104 ATP7AQ04656 1500 aa16.22■□□□□ 0.19
LIG1-209ENST00000596104 CCNB3Q8WWL7 1395 aa16.22■□□□□ 0.19
LIG1-209ENST00000596104 PLXNC1O60486 1568 aa16.21■□□□□ 0.19
LIG1-209ENST00000596104 A2MP01023 1474 aa16.21■□□□□ 0.19
LIG1-209ENST00000596104 INO80Q9ULG1 1556 aaPredicted RBP16.2■□□□□ 0.18
LIG1-209ENST00000596104 MROH2AA6NES4 1674 aa16.2■□□□□ 0.18
LIG1-209ENST00000596104 MTUS2Q5JR59 1369 aa16.19■□□□□ 0.18
LIG1-209ENST00000596104 IQSEC2Q5JU85 1478 aa16.18■□□□□ 0.18
LIG1-209ENST00000596104 CAMSAP1Q5T5Y3 1602 aa16.18■□□□□ 0.18
LIG1-209ENST00000596104 PTPRKQ15262 1439 aa16.18■□□□□ 0.18
LIG1-209ENST00000596104 DISP3Q9P2K9 1392 aa16.17■□□□□ 0.18
LIG1-209ENST00000596104 ZNF644Q9H582 1327 aaPredicted RBP16.17■□□□□ 0.18
LIG1-209ENST00000596104 MBD5Q9P267 1494 aa16.16■□□□□ 0.18
LIG1-209ENST00000596104 GGT6Q6P531 493 aa16.16■□□□□ 0.18
LIG1-209ENST00000596104 NCKAP5LQ9HCH0 1330 aa16.16■□□□□ 0.18
LIG1-209ENST00000596104 ILDR2Q71H61 639 aa16.15■□□□□ 0.18
LIG1-209ENST00000596104 SUPT6HQ7KZ85 1726 aaKnown RBP16.15■□□□□ 0.18
LIG1-209ENST00000596104 PLA2R1Q13018 1463 aa16.15■□□□□ 0.18
LIG1-209ENST00000596104 PPP6R1Q9UPN7 881 aa16.14■□□□□ 0.17
LIG1-209ENST00000596104 TIAM1Q13009 1591 aa16.13■□□□□ 0.17
LIG1-209ENST00000596104 TCOF1Q13428 1488 aaKnown RBP16.13■□□□□ 0.17
LIG1-209ENST00000596104 ZNF335Q9H4Z2 1342 aaPredicted RBP16.13■□□□□ 0.17
LIG1-209ENST00000596104 CEP162Q5TB80 1403 aa16.12■□□□□ 0.17
LIG1-209ENST00000596104 CLTCQ00610 1675 aaKnown RBP16.12■□□□□ 0.17
LIG1-209ENST00000596104 PKD2Q13563 968 aa16.12■□□□□ 0.17
LIG1-209ENST00000596104 MYO3AQ8NEV4 1616 aa16.12■□□□□ 0.17
LIG1-209ENST00000596104 RTEL1-TNFRSF6BF6WH68 1400 aa16.11■□□□□ 0.17
LIG1-209ENST00000596104 EHBP1L1Q8N3D4 1523 aa16.11■□□□□ 0.17
LIG1-209ENST00000596104 CEP170BQ9Y4F5 1589 aaPredicted RBP16.11■□□□□ 0.17
LIG1-209ENST00000596104 ZNF142P52746 1687 aaPredicted RBP16.11■□□□□ 0.17
LIG1-209ENST00000596104 DHX29Q7Z478 1369 aaKnown RBP16.1■□□□□ 0.17
LIG1-209ENST00000596104 SOCS7O14512 581 aa16.07■□□□□ 0.16
LIG1-209ENST00000596104 A2ML1A8K2U0 1454 aa16.07■□□□□ 0.16
LIG1-209ENST00000596104 ADGBQ8N7X0 1667 aa16.07■□□□□ 0.16
LIG1-209ENST00000596104 SPATA31D1Q6ZQQ2 1576 aa16.05■□□□□ 0.16
LIG1-209ENST00000596104 CCDC141Q6ZP82 1450 aa16.04■□□□□ 0.16
LIG1-209ENST00000596104 UBAP1LF5GYI3 381 aa16.04■□□□□ 0.16
LIG1-209ENST00000596104 KIF3BO15066 747 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms