RNA–Protein interactions for RNA: ENST00000583475.1

VAPA-206, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-206ENST00000583475 KIF3CO14782 793 aa9.8□□□□□ -0.84
VAPA-206ENST00000583475 CADPS2Q86UW7 1296 aa9.8□□□□□ -0.84
VAPA-206ENST00000583475 C2orf72A6NCS6 295 aa9.78□□□□□ -0.84
VAPA-206ENST00000583475 TSHZ2Q9NRE2 1034 aa9.77□□□□□ -0.85
VAPA-206ENST00000583475 CRISPLD2Q9H0B8 497 aa9.76□□□□□ -0.85
VAPA-206ENST00000583475 GPHNQ9NQX3 736 aaPredicted RBP9.76□□□□□ -0.85
VAPA-206ENST00000583475 NCKAP5LQ9HCH0 1330 aa9.76□□□□□ -0.85
VAPA-206ENST00000583475 TMC2Q8TDI7 906 aa9.75□□□□□ -0.85
VAPA-206ENST00000583475 PDE4AP27815 886 aa9.73□□□□□ -0.85
VAPA-206ENST00000583475 FOXK1P85037 733 aa9.71□□□□□ -0.86
VAPA-206ENST00000583475 HOXB3P14651 431 aaPredicted RBP9.7□□□□□ -0.86
VAPA-206ENST00000583475 DSG2Q14126 1118 aa9.7□□□□□ -0.86
VAPA-206ENST00000583475 LARP6Q9BRS8 491 aaKnown RBP9.7□□□□□ -0.86
VAPA-206ENST00000583475 SNPHO15079 494 aa9.68□□□□□ -0.86
VAPA-206ENST00000583475 FAM163AQ96GL9 167 aaPredicted RBP9.68□□□□□ -0.86
VAPA-206ENST00000583475 MFSD10Q14728 455 aa9.67□□□□□ -0.86
VAPA-206ENST00000583475 PLPP6Q8IY26 295 aa9.67□□□□□ -0.86
VAPA-206ENST00000583475 LCE2DQ5TA82 110 aaPredicted RBP9.66□□□□□ -0.86
VAPA-206ENST00000583475 POTEMA6NI47 508 aa9.65□□□□□ -0.86
VAPA-206ENST00000583475 HAP1P54257 671 aaPredicted RBP9.65□□□□□ -0.86
VAPA-206ENST00000583475 PPP1R15BQ5SWA1 713 aa9.65□□□□□ -0.86
VAPA-206ENST00000583475 DDX27Q96GQ7 796 aaKnown RBP9.65□□□□□ -0.86
VAPA-206ENST00000583475 DOK7Q18PE1 504 aa9.63□□□□□ -0.87
VAPA-206ENST00000583475 POTEGQ6S5H5 508 aa9.63□□□□□ -0.87
VAPA-206ENST00000583475 ST18O60284 1047 aa9.62□□□□□ -0.87
VAPA-206ENST00000583475 SLC34A2O95436 690 aa9.62□□□□□ -0.87
VAPA-206ENST00000583475 GPR153Q6NV75 609 aa9.58□□□□□ -0.88
VAPA-206ENST00000583475 ZNF710Q8N1W2 664 aa9.58□□□□□ -0.88
VAPA-206ENST00000583475 RIMBP2O15034 1052 aa9.57□□□□□ -0.88
VAPA-206ENST00000583475 PTCD2Q8WV60 388 aaKnown RBP9.57□□□□□ -0.88
VAPA-206ENST00000583475 ZSWIM6Q9HCJ5 1215 aa9.57□□□□□ -0.88
VAPA-206ENST00000583475 WDR70Q9NW82 654 aa9.57□□□□□ -0.88
VAPA-206ENST00000583475 KDM2AQ9Y2K7 1162 aa9.57□□□□□ -0.88
VAPA-206ENST00000583475 CAMK2BQ13554 666 aa9.56□□□□□ -0.88
VAPA-206ENST00000583475 HOXB1P14653 301 aaPredicted RBP9.55□□□□□ -0.88
VAPA-206ENST00000583475 ARSIQ5FYB1 569 aa9.55□□□□□ -0.88
VAPA-206ENST00000583475 OXER1Q8TDS5 423 aa9.55□□□□□ -0.88
VAPA-206ENST00000583475 EMILIN3Q9NT22 766 aa9.55□□□□□ -0.88
VAPA-206ENST00000583475 PCDHGA4Q9Y5G9 962 aa9.55□□□□□ -0.88
VAPA-206ENST00000583475 KHSRPQ92945 711 aaKnown RBP eCLIP9.54□□□□□ -0.882e-7■■□□□ 12.9
VAPA-206ENST00000583475 PCDH10Q9P2E7 1040 aa9.53□□□□□ -0.88
VAPA-206ENST00000583475 E2F4Q16254 413 aa9.52□□□□□ -0.89
VAPA-206ENST00000583475 VSIG10Q8N0Z9 540 aa9.52□□□□□ -0.89
VAPA-206ENST00000583475 UPF1Q92900 1129 aaKnown RBP eCLIP9.52□□□□□ -0.89
VAPA-206ENST00000583475 KDM4FA0A1W2PPD8 638 aa9.51□□□□□ -0.89
VAPA-206ENST00000583475 MARVELD3Q96A59 401 aa9.51□□□□□ -0.89
VAPA-206ENST00000583475 TBC1D12O60347 775 aa9.5□□□□□ -0.89
VAPA-206ENST00000583475 NUDT7P0C024 238 aa9.48□□□□□ -0.89
VAPA-206ENST00000583475 MAP3K9P80192 1104 aa9.47□□□□□ -0.89
VAPA-206ENST00000583475 ARIH1Q9Y4X5 557 aaPredicted RBP9.46□□□□□ -0.9
VAPA-206ENST00000583475 DPYSL4O14531 572 aa9.45□□□□□ -0.9
VAPA-206ENST00000583475 EMP3P54852 163 aa9.45□□□□□ -0.9
VAPA-206ENST00000583475 ANO8Q9HCE9 1232 aaPredicted RBP9.45□□□□□ -0.9
VAPA-206ENST00000583475 POTEB3A0JP26 581 aa9.43□□□□□ -0.9
VAPA-206ENST00000583475 EVI5O60447 810 aa9.43□□□□□ -0.9
VAPA-206ENST00000583475 POTEBQ6S5H4 581 aa9.43□□□□□ -0.9
VAPA-206ENST00000583475 KCNV2Q8TDN2 545 aa9.43□□□□□ -0.9
VAPA-206ENST00000583475 FAM205CA6NFA0 338 aa9.42□□□□□ -0.9
VAPA-206ENST00000583475 ZNF316A6NFI3 1004 aaPredicted RBP9.42□□□□□ -0.9
VAPA-206ENST00000583475 LHX6Q9UPM6 363 aa9.42□□□□□ -0.9
VAPA-206ENST00000583475 ERBB3P21860 1342 aa9.41□□□□□ -0.9
VAPA-206ENST00000583475 CDAN1Q8IWY9 1227 aa9.41□□□□□ -0.9
VAPA-206ENST00000583475 ARHGEF1Q92888 912 aaKnown RBP9.4□□□□□ -0.9
VAPA-206ENST00000583475 HS3ST6Q96QI5 342 aa9.39□□□□□ -0.91
VAPA-206ENST00000583475 VARS2Q5ST30 1063 aaKnown RBP9.38□□□□□ -0.91
VAPA-206ENST00000583475 P3H3Q8IVL6 736 aa9.38□□□□□ -0.91
VAPA-206ENST00000583475 SPDYE16A6NNV3 312 aaPredicted RBP9.37□□□□□ -0.91
VAPA-206ENST00000583475 SLC24A1O60721 1099 aa9.37□□□□□ -0.91
VAPA-206ENST00000583475 PDIA6Q15084 440 aa9.37□□□□□ -0.91
VAPA-206ENST00000583475 PLSCR2Q9NRY7 297 aa9.37□□□□□ -0.91
VAPA-206ENST00000583475 PTGER2P43116 358 aa9.35□□□□□ -0.91
VAPA-206ENST00000583475 FOSBP53539 338 aa9.33□□□□□ -0.92
VAPA-206ENST00000583475 ZNF687Q8N1G0 1237 aa9.33□□□□□ -0.92
VAPA-206ENST00000583475 PSDA5PKW4 1024 aaPredicted RBP9.32□□□□□ -0.92
VAPA-206ENST00000583475 ZNF454Q8N9F8 522 aa9.31□□□□□ -0.92
VAPA-206ENST00000583475 PCDHGA10Q9Y5H3 936 aa9.31□□□□□ -0.92
VAPA-206ENST00000583475 DDX12PQ92771 950 aa9.3□□□□□ -0.92
VAPA-206ENST00000583475 JPH4Q96JJ6 628 aa9.3□□□□□ -0.92
VAPA-206ENST00000583475 PHF14O94880 888 aa9.29□□□□□ -0.92
VAPA-206ENST00000583475 PPP4R3BQ5MIZ7 849 aa9.29□□□□□ -0.92
VAPA-206ENST00000583475 POTEEQ6S8J3 1075 aa9.29□□□□□ -0.92
VAPA-206ENST00000583475 SEMA3EO15041 775 aa9.27□□□□□ -0.93
VAPA-206ENST00000583475 ZDHHC16Q969W1 377 aa9.27□□□□□ -0.93
VAPA-206ENST00000583475 GRXCR2A6NFK2 248 aa9.26□□□□□ -0.93
VAPA-206ENST00000583475 EPAS1Q99814 870 aa9.26□□□□□ -0.93
VAPA-206ENST00000583475 ADAM33Q9BZ11 813 aa9.26□□□□□ -0.93
VAPA-206ENST00000583475 MLLT3P42568 568 aaPredicted RBP9.25□□□□□ -0.93
VAPA-206ENST00000583475 KRTAP3-3Q9BYR6 98 aa9.25□□□□□ -0.93
VAPA-206ENST00000583475 KRTAP3-2Q9BYR7 98 aa9.25□□□□□ -0.93
VAPA-206ENST00000583475 TYW1BQ6NUM6 668 aa9.24□□□□□ -0.93
VAPA-206ENST00000583475 FBXW7Q969H0 707 aa9.24□□□□□ -0.93
VAPA-206ENST00000583475 BCL2L12Q9HB09 334 aa9.24□□□□□ -0.93
VAPA-206ENST00000583475 AXIN2Q9Y2T1 843 aa9.24□□□□□ -0.93
VAPA-206ENST00000583475 OSBPP22059 807 aa9.23□□□□□ -0.93
VAPA-206ENST00000583475 PRIM1P49642 420 aaKnown RBP9.23□□□□□ -0.93
VAPA-206ENST00000583475 TESPA1A2RU30 521 aaPredicted RBP9.22□□□□□ -0.93
VAPA-206ENST00000583475 ARHGAP33O14559 1287 aa9.22□□□□□ -0.93
VAPA-206ENST00000583475 PBX2P40425 430 aa9.22□□□□□ -0.93
VAPA-206ENST00000583475 NBR1Q14596 966 aa9.22□□□□□ -0.93
VAPA-206ENST00000583475 PSEN2P49810 448 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms