RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 YEATS2Q9ULM3 1422 aa33.27■■■□□ 2.92
SHMT1-209ENST00000582653 POGZQ7Z3K3 1410 aa33.25■■■□□ 2.91
SHMT1-209ENST00000582653 KIF14Q15058 1648 aa33.24■■■□□ 2.91
SHMT1-209ENST00000582653 MYO5CQ9NQX4 1742 aa33.24■■■□□ 2.91
SHMT1-209ENST00000582653 ZFYVE16Q7Z3T8 1539 aa33.23■■■□□ 2.91
SHMT1-209ENST00000582653 PCF11O94913 1555 aaKnown RBP33.23■■■□□ 2.91
SHMT1-209ENST00000582653 MADDQ8WXG6 1647 aa33.2■■■□□ 2.91
SHMT1-209ENST00000582653 CCDC18Q5T9S5 1454 aa33.18■■■□□ 2.9
SHMT1-209ENST00000582653 AFAP1Q8N556 730 aa33.16■■■□□ 2.9
SHMT1-209ENST00000582653 ARHGAP5Q13017 1502 aa33.15■■■□□ 2.9
SHMT1-209ENST00000582653 ILDR1Q86SU0 546 aaPredicted RBP33.15■■■□□ 2.9
SHMT1-209ENST00000582653 ATP10AO60312 1499 aa33.14■■■□□ 2.9
SHMT1-209ENST00000582653 MLECQ14165 292 aa33.11■■■□□ 2.89
SHMT1-209ENST00000582653 ZNF518AQ6AHZ1 1483 aa33.11■■■□□ 2.89
SHMT1-209ENST00000582653 FYCO1Q9BQS8 1478 aa33.09■■■□□ 2.89
SHMT1-209ENST00000582653 SIGLEC1Q9BZZ2 1709 aa33.08■■■□□ 2.89
SHMT1-209ENST00000582653 RIMS1Q86UR5 1692 aaKnown RBP33.07■■■□□ 2.88
SHMT1-209ENST00000582653 CDC42BPBQ9Y5S2 1711 aa33.05■■■□□ 2.88
SHMT1-209ENST00000582653 C9orf84Q5VXU9 1444 aa33.05■■■□□ 2.88
SHMT1-209ENST00000582653 MYT1LQ9UL68 1186 aa33.04■■■□□ 2.88
SHMT1-209ENST00000582653 KDM5CP41229 1560 aa33.01■■■□□ 2.88
SHMT1-209ENST00000582653 PLPPR3Q6T4P5 718 aa33.01■■■□□ 2.87
SHMT1-209ENST00000582653 LMTK3Q96Q04 1460 aa32.99■■■□□ 2.87
SHMT1-209ENST00000582653 PREX2Q70Z35 1606 aa32.98■■■□□ 2.87
SHMT1-209ENST00000582653 MLH3Q9UHC1 1453 aa32.97■■■□□ 2.87
SHMT1-209ENST00000582653 ARHGEF12Q9NZN5 1544 aa32.96■■■□□ 2.87
SHMT1-209ENST00000582653 TRAPPC8Q9Y2L5 1435 aa32.95■■■□□ 2.87
SHMT1-209ENST00000582653 CEP162Q5TB80 1403 aa32.92■■■□□ 2.86
SHMT1-209ENST00000582653 ABCC1P33527 1531 aa32.92■■■□□ 2.86
SHMT1-209ENST00000582653 ZNF777Q9ULD5 760 aaPredicted RBP32.9■■■□□ 2.86
SHMT1-209ENST00000582653 CDC42BPAQ5VT25 1732 aa32.9■■■□□ 2.86
SHMT1-209ENST00000582653 FER1L4A9Z1Z3 1794 aa32.89■■■□□ 2.86
SHMT1-209ENST00000582653 GPATCH8Q9UKJ3 1502 aaKnown RBP32.89■■■□□ 2.86
SHMT1-209ENST00000582653 LOC105371045A0A1W2PR82 267 aa32.87■■■□□ 2.85
SHMT1-209ENST00000582653 HSPA2P54652 639 aa32.87■■■□□ 2.85
SHMT1-209ENST00000582653 DIP2CQ9Y2E4 1556 aa32.87■■■□□ 2.85
SHMT1-209ENST00000582653 REREQ9P2R6 1566 aa32.86■■■□□ 2.85
SHMT1-209ENST00000582653 CEBPAP49715 358 aaPredicted RBP32.85■■■□□ 2.85
SHMT1-209ENST00000582653 ITSN2Q9NZM3 1697 aa32.84■■■□□ 2.85
SHMT1-209ENST00000582653 HNRNPMP52272 730 aaKnown RBP eCLIP32.83■■■□□ 2.85
SHMT1-209ENST00000582653 CFDP1Q9UEE9 299 aaPredicted RBP32.83■■■□□ 2.85
SHMT1-209ENST00000582653 MTUS2Q5JR59 1369 aa32.82■■■□□ 2.84
SHMT1-209ENST00000582653 CCNB3Q8WWL7 1395 aa32.8■■■□□ 2.84
SHMT1-209ENST00000582653 ABCA6Q8N139 1617 aa32.8■■■□□ 2.84
SHMT1-209ENST00000582653 AGLP35573 1532 aa32.78■■■□□ 2.84
SHMT1-209ENST00000582653 SAMD9LQ8IVG5 1584 aa32.77■■■□□ 2.84
SHMT1-209ENST00000582653 KIAA1107Q9UPP5 1409 aa32.77■■■□□ 2.84
SHMT1-209ENST00000582653 KIDINS220Q9ULH0 1771 aa32.76■■■□□ 2.84
SHMT1-209ENST00000582653 SPAG9O60271 1321 aaKnown RBP32.76■■■□□ 2.83
SHMT1-209ENST00000582653 ESF1Q9H501 851 aaKnown RBP32.74■■■□□ 2.83
SHMT1-209ENST00000582653 FBXO41Q8TF61 875 aa32.73■■■□□ 2.83
SHMT1-209ENST00000582653 PLEKHH2Q8IVE3 1493 aa32.72■■■□□ 2.83
SHMT1-209ENST00000582653 SYCP2Q9BX26 1530 aa32.71■■■□□ 2.83
SHMT1-209ENST00000582653 SETD1BQ9UPS6 1966 aaKnown RBP32.65■■■□□ 2.82
SHMT1-209ENST00000582653 EHBP1L1Q8N3D4 1523 aa32.64■■■□□ 2.82
SHMT1-209ENST00000582653 PREX1Q8TCU6 1659 aa32.64■■■□□ 2.82
SHMT1-209ENST00000582653 ZNF644Q9H582 1327 aaPredicted RBP32.63■■■□□ 2.81
SHMT1-209ENST00000582653 CNTLNQ9NXG0 1405 aa32.6■■■□□ 2.81
SHMT1-209ENST00000582653 TIAM1Q13009 1591 aa32.6■■■□□ 2.81
SHMT1-209ENST00000582653 UHRF1BP1Q6BDS2 1440 aa32.6■■■□□ 2.81
SHMT1-209ENST00000582653 ATP7AQ04656 1500 aa32.58■■■□□ 2.81
SHMT1-209ENST00000582653 C3P01024 1663 aa32.56■■■□□ 2.8
SHMT1-209ENST00000582653 DMRT2Q9Y5R5 561 aa32.56■■■□□ 2.8
SHMT1-209ENST00000582653 MBD5Q9P267 1494 aa32.54■■■□□ 2.8
SHMT1-209ENST00000582653 VPS8Q8N3P4 1428 aa32.54■■■□□ 2.8
SHMT1-209ENST00000582653 A2MP01023 1474 aa32.54■■■□□ 2.8
SHMT1-209ENST00000582653 ZMYM3Q14202 1370 aa32.52■■■□□ 2.8
SHMT1-209ENST00000582653 INO80Q9ULG1 1556 aaPredicted RBP32.52■■■□□ 2.8
SHMT1-209ENST00000582653 RSPH4AQ5TD94 716 aa32.5■■■□□ 2.79
SHMT1-209ENST00000582653 NCOA2Q15596 1464 aa32.49■■■□□ 2.79
SHMT1-209ENST00000582653 SUPT6HQ7KZ85 1726 aaKnown RBP32.49■■■□□ 2.79
SHMT1-209ENST00000582653 PPP6R1Q9UPN7 881 aa32.49■■■□□ 2.79
SHMT1-209ENST00000582653 RTEL1-TNFRSF6BF6WH68 1400 aa32.49■■■□□ 2.79
SHMT1-209ENST00000582653 GGT6Q6P531 493 aa32.48■■■□□ 2.79
SHMT1-209ENST00000582653 CERKQ8TCT0 537 aa32.48■■■□□ 2.79
SHMT1-209ENST00000582653 PLXNC1O60486 1568 aa32.47■■■□□ 2.79
SHMT1-209ENST00000582653 NPATQ14207 1427 aa32.43■■■□□ 2.78
SHMT1-209ENST00000582653 STRCQ7RTU9 1775 aa32.43■■■□□ 2.78
SHMT1-209ENST00000582653 MROH2AA6NES4 1674 aa32.42■■■□□ 2.78
SHMT1-209ENST00000582653 DHX29Q7Z478 1369 aaKnown RBP32.41■■■□□ 2.78
SHMT1-209ENST00000582653 LRRC9Q6ZRR7 1453 aa32.41■■■□□ 2.78
SHMT1-209ENST00000582653 KANK4Q5T7N3 995 aaPredicted RBP32.4■■■□□ 2.78
SHMT1-209ENST00000582653 ADGBQ8N7X0 1667 aa32.39■■■□□ 2.78
SHMT1-209ENST00000582653 CAMSAP2Q08AD1 1489 aa32.35■■■□□ 2.77
SHMT1-209ENST00000582653 CCDC141Q6ZP82 1450 aa32.35■■■□□ 2.77
SHMT1-209ENST00000582653 PTPRTO14522 1441 aa32.34■■■□□ 2.77
SHMT1-209ENST00000582653 CLTCQ00610 1675 aaKnown RBP32.34■■■□□ 2.77
SHMT1-209ENST00000582653 TSPY4P0CV99 314 aa32.33■■■□□ 2.77
SHMT1-209ENST00000582653 TSPY10P0CW01 314 aa32.33■■■□□ 2.77
SHMT1-209ENST00000582653 KIF3BO15066 747 aa32.31■■■□□ 2.76
SHMT1-209ENST00000582653 PTPRKQ15262 1439 aa32.3■■■□□ 2.76
SHMT1-209ENST00000582653 MAP3K1Q13233 1512 aa32.3■■■□□ 2.76
SHMT1-209ENST00000582653 NCOA1Q15788 1441 aa32.27■■■□□ 2.76
SHMT1-209ENST00000582653 ARHGEF5Q12774 1597 aa32.24■■■□□ 2.75
SHMT1-209ENST00000582653 CAMSAP1Q5T5Y3 1602 aa32.21■■■□□ 2.75
SHMT1-209ENST00000582653 WASHC2CQ9Y4E1 1318 aa32.19■■■□□ 2.74
SHMT1-209ENST00000582653 NCKAP5LQ9HCH0 1330 aa32.18■■■□□ 2.74
SHMT1-209ENST00000582653 MIA2Q96PC5 1412 aa32.17■■■□□ 2.74
SHMT1-209ENST00000582653 APLP2Q06481 763 aa32.17■■■□□ 2.74
SHMT1-209ENST00000582653 PKD2Q13563 968 aa32.16■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms