RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 HECW1Q76N89 1606 aa21.42■■□□□ 1.02
SS18-219ENST00000581570 SIGLEC1Q9BZZ2 1709 aa21.41■■□□□ 1.02
SS18-219ENST00000581570 PLCH2O75038 1416 aa21.4■■□□□ 1.02
SS18-219ENST00000581570 EEA1Q15075 1411 aa21.39■■□□□ 1.02
SS18-219ENST00000581570 ATP10AO60312 1499 aa21.39■■□□□ 1.01
SS18-219ENST00000581570 CEBPAP49715 358 aaPredicted RBP21.38■■□□□ 1.01
SS18-219ENST00000581570 EFCAB2Q5VUJ9 269 aa21.37■■□□□ 1.01
SS18-219ENST00000581570 DMRT2Q9Y5R5 561 aa21.36■■□□□ 1.01
SS18-219ENST00000581570 FER1L4A9Z1Z3 1794 aa21.36■■□□□ 1.01
SS18-219ENST00000581570 CDK13Q14004 1512 aaKnown RBP21.35■■□□□ 1.01
SS18-219ENST00000581570 C9orf84Q5VXU9 1444 aa21.35■■□□□ 1.01
SS18-219ENST00000581570 ARHGEF12Q9NZN5 1544 aa21.34■■□□□ 1.01
SS18-219ENST00000581570 ATP1B4Q9UN42 357 aaPredicted RBP21.34■■□□□ 1.01
SS18-219ENST00000581570 DISP3Q9P2K9 1392 aa21.32■■□□□ 1
SS18-219ENST00000581570 CDK11AQ9UQ88 783 aaPredicted RBP21.3■■□□□ 1
SS18-219ENST00000581570 ILDR2Q71H61 639 aa21.29■■□□□ 1
SS18-219ENST00000581570 MYT1LQ9UL68 1186 aa21.29■■□□□ 1
SS18-219ENST00000581570 AFAP1Q8N556 730 aa21.28■■□□□ 1
SS18-219ENST00000581570 UHRF1BP1Q6BDS2 1440 aa21.27■■□□□ 1
SS18-219ENST00000581570 PREX1Q8TCU6 1659 aa21.27■■□□□ 1
SS18-219ENST00000581570 ZNF518AQ6AHZ1 1483 aa21.25■□□□□ 0.99
SS18-219ENST00000581570 SOCS7O14512 581 aa21.24■□□□□ 0.99
SS18-219ENST00000581570 FMN1Q68DA7 1419 aa21.22■□□□□ 0.99
SS18-219ENST00000581570 UBTFP17480 764 aaKnown RBP21.21■□□□□ 0.99
SS18-219ENST00000581570 STRCQ7RTU9 1775 aa21.2■□□□□ 0.99
SS18-219ENST00000581570 EHMT2Q96KQ7 1210 aa21.2■□□□□ 0.98
SS18-219ENST00000581570 MYO5CQ9NQX4 1742 aa21.2■□□□□ 0.98
SS18-219ENST00000581570 ESF1Q9H501 851 aaKnown RBP21.19■□□□□ 0.98
SS18-219ENST00000581570 PTPRTO14522 1441 aa21.19■□□□□ 0.98
SS18-219ENST00000581570 ARHGAP5Q13017 1502 aa21.19■□□□□ 0.98
SS18-219ENST00000581570 TROQ12816 1431 aaPredicted RBP21.18■□□□□ 0.98
SS18-219ENST00000581570 KDM5CP41229 1560 aa21.17■□□□□ 0.98
SS18-219ENST00000581570 KIF14Q15058 1648 aa21.15■□□□□ 0.98
SS18-219ENST00000581570 CLIP1P30622 1438 aa21.15■□□□□ 0.98
SS18-219ENST00000581570 SETD1BQ9UPS6 1966 aaKnown RBP21.15■□□□□ 0.98
SS18-219ENST00000581570 DIP2CQ9Y2E4 1556 aa21.14■□□□□ 0.97
SS18-219ENST00000581570 ARHGAP35Q9NRY4 1499 aa21.13■□□□□ 0.97
SS18-219ENST00000581570 MLH3Q9UHC1 1453 aa21.13■□□□□ 0.97
SS18-219ENST00000581570 TRAPPC8Q9Y2L5 1435 aa21.12■□□□□ 0.97
SS18-219ENST00000581570 REREQ9P2R6 1566 aa21.12■□□□□ 0.97
SS18-219ENST00000581570 AGLP35573 1532 aa21.09■□□□□ 0.97
SS18-219ENST00000581570 C3P01024 1663 aa21.08■□□□□ 0.96
SS18-219ENST00000581570 ABCA6Q8N139 1617 aa21.07■□□□□ 0.96
SS18-219ENST00000581570 LTBP4Q8N2S1 1624 aa21.06■□□□□ 0.96
SS18-219ENST00000581570 SPATA31D1Q6ZQQ2 1576 aa21.06■□□□□ 0.96
SS18-219ENST00000581570 NCOA1Q15788 1441 aa21.05■□□□□ 0.96
SS18-219ENST00000581570 CNTLNQ9NXG0 1405 aa21.05■□□□□ 0.96
SS18-219ENST00000581570 IQSEC2Q5JU85 1478 aa21.04■□□□□ 0.96
SS18-219ENST00000581570 ABCC1P33527 1531 aa21.02■□□□□ 0.96
SS18-219ENST00000581570 CDC42BPBQ9Y5S2 1711 aa21.01■□□□□ 0.95
SS18-219ENST00000581570 NCKAP5LQ9HCH0 1330 aa20.99■□□□□ 0.95
SS18-219ENST00000581570 ZMYM3Q14202 1370 aa20.98■□□□□ 0.95
SS18-219ENST00000581570 NPATQ14207 1427 aa20.98■□□□□ 0.95
SS18-219ENST00000581570 ZNF777Q9ULD5 760 aaPredicted RBP20.98■□□□□ 0.95
SS18-219ENST00000581570 PREX2Q70Z35 1606 aa20.97■□□□□ 0.95
SS18-219ENST00000581570 CAMSAP1Q5T5Y3 1602 aa20.96■□□□□ 0.95
SS18-219ENST00000581570 KIDINS220Q9ULH0 1771 aa20.96■□□□□ 0.95
SS18-219ENST00000581570 UBAP1LF5GYI3 381 aa20.96■□□□□ 0.95
SS18-219ENST00000581570 ITSN2Q9NZM3 1697 aa20.96■□□□□ 0.95
SS18-219ENST00000581570 SPAG9O60271 1321 aaKnown RBP20.95■□□□□ 0.94
SS18-219ENST00000581570 ZNF335Q9H4Z2 1342 aaPredicted RBP20.95■□□□□ 0.94
SS18-219ENST00000581570 LRRIQ1Q96JM4 1722 aa20.95■□□□□ 0.94
SS18-219ENST00000581570 CCDC18Q5T9S5 1454 aa20.94■□□□□ 0.94
SS18-219ENST00000581570 CASKIN1Q8WXD9 1431 aa20.94■□□□□ 0.94
SS18-219ENST00000581570 HNRNPMP52272 730 aaKnown RBP eCLIP20.93■□□□□ 0.94
SS18-219ENST00000581570 PKD2Q13563 968 aa20.92■□□□□ 0.94
SS18-219ENST00000581570 SAMD9LQ8IVG5 1584 aa20.91■□□□□ 0.94
SS18-219ENST00000581570 MROH2AA6NES4 1674 aa20.88■□□□□ 0.93
SS18-219ENST00000581570 GGT6Q6P531 493 aa20.87■□□□□ 0.93
SS18-219ENST00000581570 CDC42BPAQ5VT25 1732 aa20.86■□□□□ 0.93
SS18-219ENST00000581570 PLA2R1Q13018 1463 aa20.86■□□□□ 0.93
SS18-219ENST00000581570 SYCP2Q9BX26 1530 aa20.85■□□□□ 0.93
SS18-219ENST00000581570 GPATCH8Q9UKJ3 1502 aaKnown RBP20.85■□□□□ 0.93
SS18-219ENST00000581570 PPP6R1Q9UPN7 881 aa20.84■□□□□ 0.93
SS18-219ENST00000581570 PTPRKQ15262 1439 aa20.84■□□□□ 0.93
SS18-219ENST00000581570 A2MP01023 1474 aa20.83■□□□□ 0.93
SS18-219ENST00000581570 CFDP1Q9UEE9 299 aaPredicted RBP20.83■□□□□ 0.93
SS18-219ENST00000581570 SUPT6HQ7KZ85 1726 aaKnown RBP20.83■□□□□ 0.92
SS18-219ENST00000581570 TCOF1Q13428 1488 aaKnown RBP20.82■□□□□ 0.92
SS18-219ENST00000581570 KIAA1107Q9UPP5 1409 aa20.82■□□□□ 0.92
SS18-219ENST00000581570 ATP7AQ04656 1500 aa20.81■□□□□ 0.92
SS18-219ENST00000581570 CLTCQ00610 1675 aaKnown RBP20.8■□□□□ 0.92
SS18-219ENST00000581570 CEP170BQ9Y4F5 1589 aaPredicted RBP20.8■□□□□ 0.92
SS18-219ENST00000581570 MYO3AQ8NEV4 1616 aa20.79■□□□□ 0.92
SS18-219ENST00000581570 PLEKHH2Q8IVE3 1493 aa20.79■□□□□ 0.92
SS18-219ENST00000581570 FYCO1Q9BQS8 1478 aa20.79■□□□□ 0.92
SS18-219ENST00000581570 CCNB3Q8WWL7 1395 aa20.78■□□□□ 0.92
SS18-219ENST00000581570 ZNF142P52746 1687 aaPredicted RBP20.77■□□□□ 0.92
SS18-219ENST00000581570 PLXNC1O60486 1568 aa20.77■□□□□ 0.92
SS18-219ENST00000581570 SCAF1Q9H7N4 1312 aaKnown RBP20.77■□□□□ 0.91
SS18-219ENST00000581570 HSPA1LP34931 641 aa20.75■□□□□ 0.91
SS18-219ENST00000581570 PIP4K2BP78356 416 aa20.75■□□□□ 0.91
SS18-219ENST00000581570 TOM1O60784 492 aa20.74■□□□□ 0.91
SS18-219ENST00000581570 INO80Q9ULG1 1556 aaPredicted RBP20.74■□□□□ 0.91
SS18-219ENST00000581570 A2ML1A8K2U0 1454 aa20.73■□□□□ 0.91
SS18-219ENST00000581570 ZNF644Q9H582 1327 aaPredicted RBP20.71■□□□□ 0.91
SS18-219ENST00000581570 MTUS2Q5JR59 1369 aa20.7■□□□□ 0.9
SS18-219ENST00000581570 FBXO31Q5XUX0 539 aaPredicted RBP20.69■□□□□ 0.9
SS18-219ENST00000581570 DNMT1P26358 1616 aaKnown RBP20.68■□□□□ 0.9
SS18-219ENST00000581570 DHX29Q7Z478 1369 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms