RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 GLI2P10070 1586 aa3.89□□□□□ -1.79
SMCHD1-203ENST00000577880 JPH4Q96JJ6 628 aa3.89□□□□□ -1.79
SMCHD1-203ENST00000577880 WASHC2CQ9Y4E1 1318 aa3.89□□□□□ -1.79
SMCHD1-203ENST00000577880 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 SOGA1O94964 1423 aa3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 TDRD9Q8NDG6 1382 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 DCAF1Q9Y4B6 1507 aa3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 GTF2E1P29083 439 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 NGDNQ8NEJ9 315 aaKnown RBP3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 AATKQ6ZMQ8 1374 aa3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 KIF3BO15066 747 aa3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 MAPK8IP3Q9UPT6 1336 aa3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 ZNF608Q9ULD9 1512 aaPredicted RBP3.88□□□□□ -1.79
SMCHD1-203ENST00000577880 PNNQ9H307 717 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 STK26Q9P289 416 aa3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 ZNF330Q9Y3S2 320 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 KNSTRNQ9Y448 316 aa3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 CARMIL1Q5VZK9 1371 aa3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 HSP90AA1P07900 732 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 ATF3P18847 181 aa3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 HDGFL2Q7Z4V5 671 aaPredicted RBP3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 SPAG9O60271 1321 aaKnown RBP3.87□□□□□ -1.79
SMCHD1-203ENST00000577880 CHMP4AQ9BY43 222 aa3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 ISY1Q9ULR0 285 aaKnown RBP3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 SAFB2Q14151 953 aaKnown RBP eCLIP3.86□□□□□ -1.792e-6■■□□□ 12.6
SMCHD1-203ENST00000577880 CDK12Q9NYV4 1490 aaPredicted RBP3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 DIP2BQ9P265 1576 aa3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 RSPH4AQ5TD94 716 aa3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 CADPSQ9ULU8 1353 aa3.86□□□□□ -1.79
SMCHD1-203ENST00000577880 TULP1O00294 542 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 RTF1Q92541 710 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 UPF2Q9HAU5 1272 aaKnown RBP3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 CHD1O14646 1710 aa3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 EEA1Q15075 1411 aa3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 SALL2Q9Y467 1007 aaPredicted RBP3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 PTPRGP23470 1445 aa3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 TEX14Q8IWB6 1497 aa3.85□□□□□ -1.79
SMCHD1-203ENST00000577880 HMGB2P26583 209 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 ADAMTSL3P82987 1691 aa3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 HRCP23327 699 aa3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 RTL5Q5HYW3 569 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 CARD11Q9BXL7 1154 aa3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 LAS1LQ9Y4W2 734 aaKnown RBP3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 OS9Q13438 667 aaPredicted RBP3.84□□□□□ -1.79
SMCHD1-203ENST00000577880 WASHC2AQ641Q2 1341 aa3.84□□□□□ -1.8
SMCHD1-203ENST00000577880 U2SURPO15042 1029 aaKnown RBP3.84□□□□□ -1.8
SMCHD1-203ENST00000577880 NHSL1Q5SYE7 1610 aa3.83□□□□□ -1.8
SMCHD1-203ENST00000577880 PIP4K2BP78356 416 aa3.83□□□□□ -1.8
SMCHD1-203ENST00000577880 FHAD1B1AJZ9 1412 aa3.83□□□□□ -1.8
SMCHD1-203ENST00000577880 KRI1Q8N9T8 703 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 AMPHP49418 695 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 PROSER2Q86WR7 435 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 ABCF1Q8NE71 845 aaKnown RBP eCLIP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 CHMP4BQ9H444 224 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 PPP1R1BQ9UD71 204 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 ABCC8Q09428 1581 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 TNNT2P45379 298 aaPredicted RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 FAM9BQ8IZU0 186 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 GAPVD1Q14C86 1478 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 NUTM2FA1L443 756 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 PSME1Q06323 249 aa3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 DIEXFQ68CQ4 756 aaKnown RBP3.82□□□□□ -1.8
SMCHD1-203ENST00000577880 PRELPP51888 382 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 TMF1P82094 1093 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 POGZQ7Z3K3 1410 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 TAF7LQ5H9L4 462 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 DCAF11Q8TEB1 546 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 CWC22Q9HCG8 908 aaKnown RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 NUTM2BA6NNL0 878 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 NUTM2EB1AL46 878 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 FRAT2O75474 233 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 NUTM2AQ8IVF1 878 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 SYTL4Q96C24 671 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 TERF2IPQ9NYB0 399 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 NEUROD2Q15784 382 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 THEMISQ8N1K5 641 aaPredicted RBP3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 HDAC5Q9UQL6 1122 aa3.81□□□□□ -1.8
SMCHD1-203ENST00000577880 GOLGA3Q08378 1498 aa3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 VGFO15240 615 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 CLSTN1O94985 981 aa3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 FGD1P98174 961 aa3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 MORC1Q86VD1 984 aa3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 LTV1Q96GA3 475 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 ZBTB4Q9P1Z0 1013 aaPredicted RBP3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 EIF5BO60841 1220 aaKnown RBP3.8□□□□□ -1.8
SMCHD1-203ENST00000577880 HNRNPMP52272 730 aaKnown RBP eCLIP3.8□□□□□ -1.85e-7■■■■□ 26.7
SMCHD1-203ENST00000577880 MRS2Q9HD23 443 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 ANKRD30AQ9BXX3 1397 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 NCBP3Q53F19 620 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 GORABQ5T7V8 394 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 NUTM2DQ5VT03 806 aaPredicted RBP3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 ANKLE2Q86XL3 938 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 PITPNM2Q9BZ72 1349 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 CASC1Q6TDU7 716 aa3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 ANP32BQ92688 251 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 FTSJ3Q8IY81 847 aaKnown RBP3.79□□□□□ -1.8
SMCHD1-203ENST00000577880 MS4A1P11836 297 aa3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 KCNJ4P48050 445 aa3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 ZRSR1Q15695 479 aaKnown RBP3.78□□□□□ -1.8
SMCHD1-203ENST00000577880 C1orf141Q5JVX7 400 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms