RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 FAM50AQ14320 339 aaKnown RBP23.11■■□□□ 1.29
SS18-206ENST00000577572 PLEKHH2Q8IVE3 1493 aa23.1■■□□□ 1.29
SS18-206ENST00000577572 MYO5CQ9NQX4 1742 aa23.09■■□□□ 1.29
SS18-206ENST00000577572 EFCAB2Q5VUJ9 269 aa23.09■■□□□ 1.29
SS18-206ENST00000577572 RSPH4AQ5TD94 716 aa23.08■■□□□ 1.29
SS18-206ENST00000577572 KIAA1107Q9UPP5 1409 aa23.07■■□□□ 1.28
SS18-206ENST00000577572 CAMSAP2Q08AD1 1489 aa23.05■■□□□ 1.28
SS18-206ENST00000577572 ARHGAP5Q13017 1502 aa23.05■■□□□ 1.28
SS18-206ENST00000577572 CD109Q6YHK3 1445 aa23.04■■□□□ 1.28
SS18-206ENST00000577572 CDC42BPBQ9Y5S2 1711 aa23.03■■□□□ 1.28
SS18-206ENST00000577572 DIP2BQ9P265 1576 aa22.99■■□□□ 1.27
SS18-206ENST00000577572 ZNF777Q9ULD5 760 aaPredicted RBP22.99■■□□□ 1.27
SS18-206ENST00000577572 ZNF644Q9H582 1327 aaPredicted RBP22.99■■□□□ 1.27
SS18-206ENST00000577572 ARHGEF5Q12774 1597 aa22.98■■□□□ 1.27
SS18-206ENST00000577572 FANCAO15360 1455 aa22.98■■□□□ 1.27
SS18-206ENST00000577572 SAMD9LQ8IVG5 1584 aa22.97■■□□□ 1.27
SS18-206ENST00000577572 CFAP74Q9C0B2 1584 aa22.97■■□□□ 1.27
SS18-206ENST00000577572 DAPK1P53355 1430 aa22.97■■□□□ 1.27
SS18-206ENST00000577572 DNMT1P26358 1616 aaKnown RBP22.97■■□□□ 1.27
SS18-206ENST00000577572 MAP3K4Q9Y6R4 1608 aa22.97■■□□□ 1.27
SS18-206ENST00000577572 FAM69CQ0P6D2 419 aa22.96■■□□□ 1.27
SS18-206ENST00000577572 ABCC5O15440 1437 aa22.96■■□□□ 1.27
SS18-206ENST00000577572 AKNAQ7Z591 1439 aa22.96■■□□□ 1.27
SS18-206ENST00000577572 NEO1Q92859 1461 aa22.96■■□□□ 1.27
SS18-206ENST00000577572 MBD5Q9P267 1494 aa22.96■■□□□ 1.27
SS18-206ENST00000577572 ROCK1Q13464 1354 aa22.95■■□□□ 1.26
SS18-206ENST00000577572 SHANK2Q9UPX8 1470 aa22.95■■□□□ 1.26
SS18-206ENST00000577572 ABCC1P33527 1531 aa22.92■■□□□ 1.26
SS18-206ENST00000577572 CCDC141Q6ZP82 1450 aa22.92■■□□□ 1.26
SS18-206ENST00000577572 ACIN1Q9UKV3 1341 aaKnown RBP22.91■■□□□ 1.26
SS18-206ENST00000577572 HRCP23327 699 aa22.91■■□□□ 1.26
SS18-206ENST00000577572 ITGAEP38570 1179 aa22.91■■□□□ 1.26
SS18-206ENST00000577572 PTPRKQ15262 1439 aa22.91■■□□□ 1.26
SS18-206ENST00000577572 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
SS18-206ENST00000577572 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
SS18-206ENST00000577572 TEX14Q8IWB6 1497 aa22.9■■□□□ 1.26
SS18-206ENST00000577572 HFM1A2PYH4 1435 aa22.88■■□□□ 1.25
SS18-206ENST00000577572 ADGRL2O95490 1459 aa22.87■■□□□ 1.25
SS18-206ENST00000577572 HNRNPMP52272 730 aaKnown RBP eCLIP22.87■■□□□ 1.25
SS18-206ENST00000577572 SYCP2Q9BX26 1530 aa22.87■■□□□ 1.25
SS18-206ENST00000577572 ADGRL1O94910 1474 aa22.86■■□□□ 1.25
SS18-206ENST00000577572 MAST1Q9Y2H9 1570 aa22.84■■□□□ 1.25
SS18-206ENST00000577572 SETD5Q9C0A6 1442 aa22.84■■□□□ 1.25
SS18-206ENST00000577572 ARHGEF12Q9NZN5 1544 aa22.84■■□□□ 1.25
SS18-206ENST00000577572 ANKRD30AQ9BXX3 1397 aa22.84■■□□□ 1.25
SS18-206ENST00000577572 CROCC2H7BZ55 1655 aa22.84■■□□□ 1.25
SS18-206ENST00000577572 C9orf84Q5VXU9 1444 aa22.83■■□□□ 1.25
SS18-206ENST00000577572 SCAPERQ9BY12 1400 aa22.83■■□□□ 1.25
SS18-206ENST00000577572 RTEL1-TNFRSF6BF6WH68 1400 aa22.82■■□□□ 1.24
SS18-206ENST00000577572 NCOA1Q15788 1441 aa22.82■■□□□ 1.24
SS18-206ENST00000577572 NAIPQ13075 1403 aa22.8■■□□□ 1.24
SS18-206ENST00000577572 KIF13AQ9H1H9 1805 aa22.8■■□□□ 1.24
SS18-206ENST00000577572 ZNF518AQ6AHZ1 1483 aa22.79■■□□□ 1.24
SS18-206ENST00000577572 TRAPPC8Q9Y2L5 1435 aa22.78■■□□□ 1.24
SS18-206ENST00000577572 ADGBQ8N7X0 1667 aa22.77■■□□□ 1.24
SS18-206ENST00000577572 POGZQ7Z3K3 1410 aa22.76■■□□□ 1.23
SS18-206ENST00000577572 CHIC2Q9UKJ5 165 aa22.76■■□□□ 1.23
SS18-206ENST00000577572 DENND4BO75064 1496 aaPredicted RBP22.76■■□□□ 1.23
SS18-206ENST00000577572 SPAG9O60271 1321 aaKnown RBP22.75■■□□□ 1.23
SS18-206ENST00000577572 RAB3GAP2Q9H2M9 1393 aa22.74■■□□□ 1.23
SS18-206ENST00000577572 PPRC1Q5VV67 1664 aaKnown RBP22.73■■□□□ 1.23
SS18-206ENST00000577572 GCC2Q8IWJ2 1684 aa22.73■■□□□ 1.23
SS18-206ENST00000577572 PLXNC1O60486 1568 aa22.72■■□□□ 1.23
SS18-206ENST00000577572 MLH3Q9UHC1 1453 aa22.72■■□□□ 1.23
SS18-206ENST00000577572 KDM5CP41229 1560 aa22.72■■□□□ 1.23
SS18-206ENST00000577572 AFAP1Q8N556 730 aa22.71■■□□□ 1.23
SS18-206ENST00000577572 RRP7BPQ9NSQ0 103 aa22.71■■□□□ 1.23
SS18-206ENST00000577572 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
SS18-206ENST00000577572 ZFYVE16Q7Z3T8 1539 aa22.68■■□□□ 1.22
SS18-206ENST00000577572 INO80Q9ULG1 1556 aaPredicted RBP22.67■■□□□ 1.22
SS18-206ENST00000577572 ANKRD50Q9ULJ7 1429 aa22.66■■□□□ 1.22
SS18-206ENST00000577572 ATP7AQ04656 1500 aa22.66■■□□□ 1.22
SS18-206ENST00000577572 MAGI2Q86UL8 1455 aa22.66■■□□□ 1.22
SS18-206ENST00000577572 DUOX2Q9NRD8 1548 aa22.65■■□□□ 1.22
SS18-206ENST00000577572 TRHP20396 242 aaPredicted RBP22.64■■□□□ 1.21
SS18-206ENST00000577572 ERBINQ96RT1 1412 aa22.63■■□□□ 1.21
SS18-206ENST00000577572 ZMYM4Q5VZL5 1548 aa22.62■■□□□ 1.21
SS18-206ENST00000577572 TSPOAP1O95153 1857 aa22.62■■□□□ 1.21
SS18-206ENST00000577572 CLSPNQ9HAW4 1339 aa22.61■■□□□ 1.21
SS18-206ENST00000577572 RICTORQ6R327 1708 aa22.61■■□□□ 1.21
SS18-206ENST00000577572 HECW2Q9P2P5 1572 aa22.61■■□□□ 1.21
SS18-206ENST00000577572 RAPGEF3O95398 923 aa22.59■■□□□ 1.21
SS18-206ENST00000577572 DHX29Q7Z478 1369 aaKnown RBP22.57■■□□□ 1.2
SS18-206ENST00000577572 KIDINS220Q9ULH0 1771 aa22.56■■□□□ 1.2
SS18-206ENST00000577572 FRMPD1Q5SYB0 1578 aa22.56■■□□□ 1.2
SS18-206ENST00000577572 DHX57Q6P158 1386 aaKnown RBP22.55■■□□□ 1.2
SS18-206ENST00000577572 CCER1Q8TC90 406 aaPredicted RBP22.55■■□□□ 1.2
SS18-206ENST00000577572 MYT1LQ9UL68 1186 aa22.55■■□□□ 1.2
SS18-206ENST00000577572 A2MP01023 1474 aa22.52■■□□□ 1.2
SS18-206ENST00000577572 KDM6BO15054 1643 aa22.51■■□□□ 1.19
SS18-206ENST00000577572 EIF2AK4Q9P2K8 1649 aaKnown RBP22.51■■□□□ 1.19
SS18-206ENST00000577572 COL17A1Q9UMD9 1497 aaPredicted RBP22.51■■□□□ 1.19
SS18-206ENST00000577572 KDM5DQ9BY66 1539 aa22.5■■□□□ 1.19
SS18-206ENST00000577572 TRIM52Q96A61 297 aa22.48■■□□□ 1.19
SS18-206ENST00000577572 REREQ9P2R6 1566 aa22.47■■□□□ 1.19
SS18-206ENST00000577572 ZEB1P37275 1124 aaPredicted RBP22.47■■□□□ 1.19
SS18-206ENST00000577572 DIP2CQ9Y2E4 1556 aa22.46■■□□□ 1.19
SS18-206ENST00000577572 ATP10AO60312 1499 aa22.46■■□□□ 1.19
SS18-206ENST00000577572 UNC13BO14795 1591 aa22.46■■□□□ 1.19
SS18-206ENST00000577572 ABCA6Q8N139 1617 aa22.45■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms