RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 HNRNPUL2Q1KMD3 747 aaKnown RBP32.75■■■□□ 2.83
VPS53-210ENST00000571456 AKNAQ7Z591 1439 aa32.75■■■□□ 2.83
VPS53-210ENST00000571456 SIGLEC1Q9BZZ2 1709 aa32.71■■■□□ 2.83
VPS53-210ENST00000571456 FER1L4A9Z1Z3 1794 aa32.71■■■□□ 2.83
VPS53-210ENST00000571456 CCDC18Q5T9S5 1454 aa32.68■■■□□ 2.82
VPS53-210ENST00000571456 ZMYM4Q5VZL5 1548 aa32.68■■■□□ 2.82
VPS53-210ENST00000571456 TTC37Q6PGP7 1564 aa32.67■■■□□ 2.82
VPS53-210ENST00000571456 CFAP74Q9C0B2 1584 aa32.67■■■□□ 2.82
VPS53-210ENST00000571456 ZFYVE16Q7Z3T8 1539 aa32.67■■■□□ 2.82
VPS53-210ENST00000571456 VPS8Q8N3P4 1428 aa32.66■■■□□ 2.82
VPS53-210ENST00000571456 MLECQ14165 292 aa32.64■■■□□ 2.82
VPS53-210ENST00000571456 SPATA31D1Q6ZQQ2 1576 aa32.63■■■□□ 2.81
VPS53-210ENST00000571456 YEATS2Q9ULM3 1422 aa32.63■■■□□ 2.81
VPS53-210ENST00000571456 PREX1Q8TCU6 1659 aa32.62■■■□□ 2.81
VPS53-210ENST00000571456 ATP1B4Q9UN42 357 aaPredicted RBP32.61■■■□□ 2.81
VPS53-210ENST00000571456 CDK11AQ9UQ88 783 aaPredicted RBP32.61■■■□□ 2.81
VPS53-210ENST00000571456 MAGI2Q86UL8 1455 aa32.61■■■□□ 2.81
VPS53-210ENST00000571456 DMRT2Q9Y5R5 561 aa32.59■■■□□ 2.81
VPS53-210ENST00000571456 PLEKHD1A6NEE1 506 aa32.57■■■□□ 2.8
VPS53-210ENST00000571456 STRCQ7RTU9 1775 aa32.57■■■□□ 2.8
VPS53-210ENST00000571456 LRRIQ1Q96JM4 1722 aa32.56■■■□□ 2.8
VPS53-210ENST00000571456 CDK13Q14004 1512 aaKnown RBP32.56■■■□□ 2.8
VPS53-210ENST00000571456 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP32.52■■■□□ 2.8
VPS53-210ENST00000571456 ARHGEF12Q9NZN5 1544 aa32.51■■■□□ 2.8
VPS53-210ENST00000571456 SETD1BQ9UPS6 1966 aaKnown RBP32.49■■■□□ 2.79
VPS53-210ENST00000571456 CEBPAP49715 358 aaPredicted RBP32.45■■■□□ 2.79
VPS53-210ENST00000571456 MAP3K1Q13233 1512 aa32.43■■■□□ 2.78
VPS53-210ENST00000571456 TROQ12816 1431 aaPredicted RBP32.43■■■□□ 2.78
VPS53-210ENST00000571456 ATP10AO60312 1499 aa32.42■■■□□ 2.78
VPS53-210ENST00000571456 UHRF1BP1Q6BDS2 1440 aa32.41■■■□□ 2.78
VPS53-210ENST00000571456 C9orf84Q5VXU9 1444 aa32.4■■■□□ 2.78
VPS53-210ENST00000571456 SCAPERQ9BY12 1400 aa32.4■■■□□ 2.78
VPS53-210ENST00000571456 PTPRTO14522 1441 aa32.36■■■□□ 2.77
VPS53-210ENST00000571456 KIF14Q15058 1648 aa32.35■■■□□ 2.77
VPS53-210ENST00000571456 TIAM1Q13009 1591 aa32.35■■■□□ 2.77
VPS53-210ENST00000571456 APLP2Q06481 763 aa32.32■■■□□ 2.76
VPS53-210ENST00000571456 PLCH2O75038 1416 aa32.31■■■□□ 2.76
VPS53-210ENST00000571456 EHBP1L1Q8N3D4 1523 aa32.31■■■□□ 2.76
VPS53-210ENST00000571456 MTUS2Q5JR59 1369 aa32.3■■■□□ 2.76
VPS53-210ENST00000571456 LTBP4Q8N2S1 1624 aa32.29■■■□□ 2.76
VPS53-210ENST00000571456 IQSEC2Q5JU85 1478 aa32.29■■■□□ 2.76
VPS53-210ENST00000571456 EFCAB2Q5VUJ9 269 aa32.2■■■□□ 2.75
VPS53-210ENST00000571456 LRRC9Q6ZRR7 1453 aa32.2■■■□□ 2.75
VPS53-210ENST00000571456 C3P01024 1663 aa32.2■■■□□ 2.74
VPS53-210ENST00000571456 MYO5CQ9NQX4 1742 aa32.19■■■□□ 2.74
VPS53-210ENST00000571456 SUPT6HQ7KZ85 1726 aaKnown RBP32.17■■■□□ 2.74
VPS53-210ENST00000571456 ZNF518AQ6AHZ1 1483 aa32.16■■■□□ 2.74
VPS53-210ENST00000571456 KDM5CP41229 1560 aa32.12■■■□□ 2.73
VPS53-210ENST00000571456 NCOA1Q15788 1441 aa32.11■■■□□ 2.73
VPS53-210ENST00000571456 TRAPPC8Q9Y2L5 1435 aa32.1■■■□□ 2.73
VPS53-210ENST00000571456 REREQ9P2R6 1566 aa32.1■■■□□ 2.73
VPS53-210ENST00000571456 DIP2CQ9Y2E4 1556 aa32.1■■■□□ 2.73
VPS53-210ENST00000571456 AFAP1Q8N556 730 aa32.09■■■□□ 2.73
VPS53-210ENST00000571456 MYT1LQ9UL68 1186 aa32.08■■■□□ 2.73
VPS53-210ENST00000571456 PREX2Q70Z35 1606 aa32.07■■■□□ 2.72
VPS53-210ENST00000571456 ESF1Q9H501 851 aaKnown RBP32.06■■■□□ 2.72
VPS53-210ENST00000571456 CDC42BPAQ5VT25 1732 aa32.05■■■□□ 2.72
VPS53-210ENST00000571456 ITSN2Q9NZM3 1697 aa32.05■■■□□ 2.72
VPS53-210ENST00000571456 CCNB3Q8WWL7 1395 aa32.04■■■□□ 2.72
VPS53-210ENST00000571456 NCOA2Q15596 1464 aa32.03■■■□□ 2.72
VPS53-210ENST00000571456 UBAP1LF5GYI3 381 aa32.02■■■□□ 2.72
VPS53-210ENST00000571456 ABCA6Q8N139 1617 aa32.01■■■□□ 2.72
VPS53-210ENST00000571456 CDC42BPBQ9Y5S2 1711 aa32.01■■■□□ 2.72
VPS53-210ENST00000571456 KANK4Q5T7N3 995 aaPredicted RBP32.01■■■□□ 2.71
VPS53-210ENST00000571456 ARHGAP5Q13017 1502 aa32■■■□□ 2.71
VPS53-210ENST00000571456 AGLP35573 1532 aa32■■■□□ 2.71
VPS53-210ENST00000571456 GPATCH8Q9UKJ3 1502 aaKnown RBP32■■■□□ 2.71
VPS53-210ENST00000571456 CAMSAP1Q5T5Y3 1602 aa31.98■■■□□ 2.71
VPS53-210ENST00000571456 MLH3Q9UHC1 1453 aa31.97■■■□□ 2.71
VPS53-210ENST00000571456 CNTLNQ9NXG0 1405 aa31.95■■■□□ 2.71
VPS53-210ENST00000571456 ZNF335Q9H4Z2 1342 aaPredicted RBP31.94■■■□□ 2.7
VPS53-210ENST00000571456 CFDP1Q9UEE9 299 aaPredicted RBP31.9■■■□□ 2.7
VPS53-210ENST00000571456 NPATQ14207 1427 aa31.89■■■□□ 2.7
VPS53-210ENST00000571456 PLEKHH2Q8IVE3 1493 aa31.89■■■□□ 2.7
VPS53-210ENST00000571456 NCKAP5LQ9HCH0 1330 aa31.88■■■□□ 2.69
VPS53-210ENST00000571456 MROH2AA6NES4 1674 aa31.86■■■□□ 2.69
VPS53-210ENST00000571456 MYOM3Q5VTT5 1437 aa31.85■■■□□ 2.69
VPS53-210ENST00000571456 MIA2Q96PC5 1412 aa31.85■■■□□ 2.69
VPS53-210ENST00000571456 KIAA1107Q9UPP5 1409 aa31.82■■■□□ 2.68
VPS53-210ENST00000571456 MED1Q15648 1581 aaPredicted RBP31.81■■■□□ 2.68
VPS53-210ENST00000571456 KIDINS220Q9ULH0 1771 aa31.81■■■□□ 2.68
VPS53-210ENST00000571456 ABCC1P33527 1531 aa31.81■■■□□ 2.68
VPS53-210ENST00000571456 PKD2Q13563 968 aa31.79■■■□□ 2.68
VPS53-210ENST00000571456 SAMD9LQ8IVG5 1584 aa31.79■■■□□ 2.68
VPS53-210ENST00000571456 ZMYM3Q14202 1370 aa31.78■■■□□ 2.68
VPS53-210ENST00000571456 PLA2R1Q13018 1463 aa31.78■■■□□ 2.68
VPS53-210ENST00000571456 ZNF142P52746 1687 aaPredicted RBP31.76■■■□□ 2.68
VPS53-210ENST00000571456 HSPA1LP34931 641 aa31.74■■■□□ 2.67
VPS53-210ENST00000571456 ZNF777Q9ULD5 760 aaPredicted RBP31.74■■■□□ 2.67
VPS53-210ENST00000571456 TCOF1Q13428 1488 aaKnown RBP31.72■■■□□ 2.67
VPS53-210ENST00000571456 MYO3AQ8NEV4 1616 aa31.72■■■□□ 2.67
VPS53-210ENST00000571456 RSPH4AQ5TD94 716 aa31.71■■■□□ 2.67
VPS53-210ENST00000571456 CAMSAP2Q08AD1 1489 aa31.7■■■□□ 2.66
VPS53-210ENST00000571456 SCAF1Q9H7N4 1312 aaKnown RBP31.7■■■□□ 2.66
VPS53-210ENST00000571456 FGD6Q6ZV73 1430 aa31.69■■■□□ 2.66
VPS53-210ENST00000571456 SYCP2Q9BX26 1530 aa31.69■■■□□ 2.66
VPS53-210ENST00000571456 CEP170BQ9Y4F5 1589 aaPredicted RBP31.68■■■□□ 2.66
VPS53-210ENST00000571456 PPP6R1Q9UPN7 881 aa31.67■■■□□ 2.66
VPS53-210ENST00000571456 CLTCQ00610 1675 aaKnown RBP31.66■■■□□ 2.66
VPS53-210ENST00000571456 PTPN23Q9H3S7 1636 aa31.65■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms