RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 COL17A1Q9UMD9 1497 aaPredicted RBP14.59□□□□□ -0.07
VPS35-211ENST00000569950 SAMD9LQ8IVG5 1584 aa14.59□□□□□ -0.07
VPS35-211ENST00000569950 FANCAO15360 1455 aa14.57□□□□□ -0.08
VPS35-211ENST00000569950 NEO1Q92859 1461 aa14.57□□□□□ -0.08
VPS35-211ENST00000569950 MYOM3Q5VTT5 1437 aa14.56□□□□□ -0.08
VPS35-211ENST00000569950 ARHGEF12Q9NZN5 1544 aa14.56□□□□□ -0.08
VPS35-211ENST00000569950 FRMPD1Q5SYB0 1578 aa14.56□□□□□ -0.08
VPS35-211ENST00000569950 PPARGC1BQ86YN6 1023 aaKnown RBP14.55□□□□□ -0.08
VPS35-211ENST00000569950 TEX14Q8IWB6 1497 aa14.55□□□□□ -0.08
VPS35-211ENST00000569950 ABCC1P33527 1531 aa14.55□□□□□ -0.08
VPS35-211ENST00000569950 ARHGAP5Q13017 1502 aa14.55□□□□□ -0.08
VPS35-211ENST00000569950 CFAP74Q9C0B2 1584 aa14.55□□□□□ -0.08
VPS35-211ENST00000569950 APLP2Q06481 763 aa14.54□□□□□ -0.08
VPS35-211ENST00000569950 CCNB3Q8WWL7 1395 aa14.54□□□□□ -0.08
VPS35-211ENST00000569950 RICTORQ6R327 1708 aa14.54□□□□□ -0.08
VPS35-211ENST00000569950 AKNAQ7Z591 1439 aa14.52□□□□□ -0.08
VPS35-211ENST00000569950 FGD6Q6ZV73 1430 aa14.51□□□□□ -0.09
VPS35-211ENST00000569950 ZNF644Q9H582 1327 aaPredicted RBP14.51□□□□□ -0.09
VPS35-211ENST00000569950 TCOF1Q13428 1488 aaKnown RBP14.5□□□□□ -0.09
VPS35-211ENST00000569950 MIA2Q96PC5 1412 aa14.5□□□□□ -0.09
VPS35-211ENST00000569950 PTPN23Q9H3S7 1636 aa14.5□□□□□ -0.09
VPS35-211ENST00000569950 CAMSAP2Q08AD1 1489 aa14.5□□□□□ -0.09
VPS35-211ENST00000569950 MBD5Q9P267 1494 aa14.5□□□□□ -0.09
VPS35-211ENST00000569950 KDM6BO15054 1643 aa14.49□□□□□ -0.09
VPS35-211ENST00000569950 SYCP2Q9BX26 1530 aa14.49□□□□□ -0.09
VPS35-211ENST00000569950 ADGRL1O94910 1474 aa14.49□□□□□ -0.09
VPS35-211ENST00000569950 KDM5CP41229 1560 aa14.47□□□□□ -0.09
VPS35-211ENST00000569950 EFCAB2Q5VUJ9 269 aa14.47□□□□□ -0.09
VPS35-211ENST00000569950 KIAA1107Q9UPP5 1409 aa14.47□□□□□ -0.09
VPS35-211ENST00000569950 TRAPPC8Q9Y2L5 1435 aa14.47□□□□□ -0.09
VPS35-211ENST00000569950 CFDP1Q9UEE9 299 aaPredicted RBP14.46□□□□□ -0.09
VPS35-211ENST00000569950 POGZQ7Z3K3 1410 aa14.46□□□□□ -0.09
VPS35-211ENST00000569950 SCAPERQ9BY12 1400 aa14.46□□□□□ -0.09
VPS35-211ENST00000569950 RRBP1Q9P2E9 1410 aaKnown RBP14.46□□□□□ -0.09
VPS35-211ENST00000569950 ARHGEF5Q12774 1597 aa14.46□□□□□ -0.09
VPS35-211ENST00000569950 ZMYM4Q5VZL5 1548 aa14.46□□□□□ -0.1
VPS35-211ENST00000569950 CROCC2H7BZ55 1655 aa14.44□□□□□ -0.1
VPS35-211ENST00000569950 DENND4BO75064 1496 aaPredicted RBP14.44□□□□□ -0.1
VPS35-211ENST00000569950 DNMT1P26358 1616 aaKnown RBP14.43□□□□□ -0.1
VPS35-211ENST00000569950 PLEKHH2Q8IVE3 1493 aa14.43□□□□□ -0.1
VPS35-211ENST00000569950 INO80Q9ULG1 1556 aaPredicted RBP14.43□□□□□ -0.1
VPS35-211ENST00000569950 KIDINS220Q9ULH0 1771 aa14.42□□□□□ -0.1
VPS35-211ENST00000569950 RAPGEF3O95398 923 aa14.41□□□□□ -0.1
VPS35-211ENST00000569950 SIGLEC1Q9BZZ2 1709 aa14.41□□□□□ -0.1
VPS35-211ENST00000569950 ZNF518AQ6AHZ1 1483 aa14.4□□□□□ -0.1
VPS35-211ENST00000569950 HNRNPMP52272 730 aaKnown RBP eCLIP14.4□□□□□ -0.16e-6■■■■□ 20.3
VPS35-211ENST00000569950 ZNF777Q9ULD5 760 aaPredicted RBP14.4□□□□□ -0.1
VPS35-211ENST00000569950 ABCC5O15440 1437 aa14.4□□□□□ -0.1
VPS35-211ENST00000569950 MAST1Q9Y2H9 1570 aa14.39□□□□□ -0.11
VPS35-211ENST00000569950 ZFYVE16Q7Z3T8 1539 aa14.39□□□□□ -0.11
VPS35-211ENST00000569950 PTPRKQ15262 1439 aa14.39□□□□□ -0.11
VPS35-211ENST00000569950 HECW2Q9P2P5 1572 aa14.39□□□□□ -0.11
VPS35-211ENST00000569950 CCDC141Q6ZP82 1450 aa14.38□□□□□ -0.11
VPS35-211ENST00000569950 ABCA6Q8N139 1617 aa14.38□□□□□ -0.11
VPS35-211ENST00000569950 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.38□□□□□ -0.11
VPS35-211ENST00000569950 AFAP1Q8N556 730 aa14.38□□□□□ -0.11
VPS35-211ENST00000569950 MLH3Q9UHC1 1453 aa14.38□□□□□ -0.11
VPS35-211ENST00000569950 YEATS2Q9ULM3 1422 aa14.37□□□□□ -0.11
VPS35-211ENST00000569950 ARHGEF40Q8TER5 1519 aa14.36□□□□□ -0.11
VPS35-211ENST00000569950 DIP2CQ9Y2E4 1556 aa14.36□□□□□ -0.11
VPS35-211ENST00000569950 DAPK1P53355 1430 aa14.36□□□□□ -0.11
VPS35-211ENST00000569950 ADGBQ8N7X0 1667 aa14.36□□□□□ -0.11
VPS35-211ENST00000569950 ATP7AQ04656 1500 aa14.36□□□□□ -0.11
VPS35-211ENST00000569950 SHANK2Q9UPX8 1470 aa14.35□□□□□ -0.11
VPS35-211ENST00000569950 MAGI2Q86UL8 1455 aa14.33□□□□□ -0.12
VPS35-211ENST00000569950 PLXNC1O60486 1568 aa14.33□□□□□ -0.12
VPS35-211ENST00000569950 FOXD1Q16676 465 aa14.32□□□□□ -0.12
VPS35-211ENST00000569950 RTEL1-TNFRSF6BF6WH68 1400 aa14.32□□□□□ -0.12
VPS35-211ENST00000569950 ADGRL2O95490 1459 aa14.31□□□□□ -0.12
VPS35-211ENST00000569950 C9orf84Q5VXU9 1444 aa14.31□□□□□ -0.12
VPS35-211ENST00000569950 REREQ9P2R6 1566 aa14.3□□□□□ -0.12
VPS35-211ENST00000569950 FAM50AQ14320 339 aaKnown RBP14.29□□□□□ -0.12
VPS35-211ENST00000569950 RSPH4AQ5TD94 716 aa14.28□□□□□ -0.12
VPS35-211ENST00000569950 SPAG9O60271 1321 aaKnown RBP14.27□□□□□ -0.12
VPS35-211ENST00000569950 ATP10AO60312 1499 aa14.26□□□□□ -0.13
VPS35-211ENST00000569950 NCOA1Q15788 1441 aa14.26□□□□□ -0.13
VPS35-211ENST00000569950 BCORL1Q5H9F3 1711 aa14.26□□□□□ -0.13
VPS35-211ENST00000569950 ROCK1Q13464 1354 aa14.23□□□□□ -0.13
VPS35-211ENST00000569950 AGLP35573 1532 aa14.23□□□□□ -0.13
VPS35-211ENST00000569950 GCC2Q8IWJ2 1684 aa14.23□□□□□ -0.13
VPS35-211ENST00000569950 A2MP01023 1474 aa14.22□□□□□ -0.13
VPS35-211ENST00000569950 MROH1Q8NDA8 1641 aa14.22□□□□□ -0.13
VPS35-211ENST00000569950 CHIC2Q9UKJ5 165 aa14.21□□□□□ -0.13
VPS35-211ENST00000569950 DUOX2Q9NRD8 1548 aa14.2□□□□□ -0.14
VPS35-211ENST00000569950 EIF2AK4Q9P2K8 1649 aaKnown RBP14.2□□□□□ -0.14
VPS35-211ENST00000569950 TSPY4P0CV99 314 aa14.2□□□□□ -0.14
VPS35-211ENST00000569950 TSPY10P0CW01 314 aa14.2□□□□□ -0.14
VPS35-211ENST00000569950 DHX29Q7Z478 1369 aaKnown RBP14.2□□□□□ -0.14
VPS35-211ENST00000569950 KIF15Q9NS87 1388 aa14.2□□□□□ -0.14
VPS35-211ENST00000569950 DEPDC5O75140 1603 aa14.19□□□□□ -0.14
VPS35-211ENST00000569950 RNF17Q9BXT8 1623 aaKnown RBP14.19□□□□□ -0.14
VPS35-211ENST00000569950 NAIPQ13075 1403 aa14.19□□□□□ -0.14
VPS35-211ENST00000569950 ADAMTSL3P82987 1691 aa14.18□□□□□ -0.14
VPS35-211ENST00000569950 ANKRD30AQ9BXX3 1397 aa14.18□□□□□ -0.14
VPS35-211ENST00000569950 HFM1A2PYH4 1435 aa14.17□□□□□ -0.14
VPS35-211ENST00000569950 ITGAEP38570 1179 aa14.17□□□□□ -0.14
VPS35-211ENST00000569950 ERBINQ96RT1 1412 aa14.16□□□□□ -0.14
VPS35-211ENST00000569950 RRP7BPQ9NSQ0 103 aa14.16□□□□□ -0.14
VPS35-211ENST00000569950 UNC13BO14795 1591 aa14.14□□□□□ -0.15
VPS35-211ENST00000569950 VWDEQ8N2E2 1590 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms