RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 ARHGAP5Q13017 1502 aa20.93■□□□□ 0.94
CNOT1-220ENST00000569916 ZMYM4Q5VZL5 1548 aa20.93■□□□□ 0.94
CNOT1-220ENST00000569916 ARHGEF40Q8TER5 1519 aa20.91■□□□□ 0.94
CNOT1-220ENST00000569916 POGZQ7Z3K3 1410 aa20.88■□□□□ 0.93
CNOT1-220ENST00000569916 EHBP1L1Q8N3D4 1523 aa20.88■□□□□ 0.93
CNOT1-220ENST00000569916 SCAPERQ9BY12 1400 aa20.87■□□□□ 0.93
CNOT1-220ENST00000569916 EFCAB2Q5VUJ9 269 aa20.87■□□□□ 0.93
CNOT1-220ENST00000569916 VPS8Q8N3P4 1428 aa20.87■□□□□ 0.93
CNOT1-220ENST00000569916 ABCC1P33527 1531 aa20.85■□□□□ 0.93
CNOT1-220ENST00000569916 ITSN2Q9NZM3 1697 aa20.84■□□□□ 0.93
CNOT1-220ENST00000569916 TIAM1Q13009 1591 aa20.84■□□□□ 0.93
CNOT1-220ENST00000569916 MTUS2Q5JR59 1369 aa20.84■□□□□ 0.93
CNOT1-220ENST00000569916 ZFYVE16Q7Z3T8 1539 aa20.83■□□□□ 0.93
CNOT1-220ENST00000569916 KDM5CP41229 1560 aa20.82■□□□□ 0.92
CNOT1-220ENST00000569916 GPATCH8Q9UKJ3 1502 aaKnown RBP20.82■□□□□ 0.92
CNOT1-220ENST00000569916 MAGI2Q86UL8 1455 aa20.81■□□□□ 0.92
CNOT1-220ENST00000569916 SIGLEC1Q9BZZ2 1709 aa20.81■□□□□ 0.92
CNOT1-220ENST00000569916 ZNF518AQ6AHZ1 1483 aa20.81■□□□□ 0.92
CNOT1-220ENST00000569916 SAMD9LQ8IVG5 1584 aa20.8■□□□□ 0.92
CNOT1-220ENST00000569916 YEATS2Q9ULM3 1422 aa20.79■□□□□ 0.92
CNOT1-220ENST00000569916 BCORL1Q5H9F3 1711 aa20.79■□□□□ 0.92
CNOT1-220ENST00000569916 ARHGEF12Q9NZN5 1544 aa20.78■□□□□ 0.92
CNOT1-220ENST00000569916 ADAMTSL3P82987 1691 aa20.78■□□□□ 0.92
CNOT1-220ENST00000569916 SUPT6HQ7KZ85 1726 aaKnown RBP20.78■□□□□ 0.92
CNOT1-220ENST00000569916 HECW2Q9P2P5 1572 aa20.77■□□□□ 0.92
CNOT1-220ENST00000569916 CCNB3Q8WWL7 1395 aa20.75■□□□□ 0.91
CNOT1-220ENST00000569916 MAP3K1Q13233 1512 aa20.73■□□□□ 0.91
CNOT1-220ENST00000569916 SYCP2Q9BX26 1530 aa20.73■□□□□ 0.91
CNOT1-220ENST00000569916 TRAPPC8Q9Y2L5 1435 aa20.73■□□□□ 0.91
CNOT1-220ENST00000569916 DIP2CQ9Y2E4 1556 aa20.72■□□□□ 0.91
CNOT1-220ENST00000569916 ABCA6Q8N139 1617 aa20.71■□□□□ 0.91
CNOT1-220ENST00000569916 NCOA2Q15596 1464 aa20.71■□□□□ 0.91
CNOT1-220ENST00000569916 AFAP1Q8N556 730 aa20.71■□□□□ 0.91
CNOT1-220ENST00000569916 MADDQ8WXG6 1647 aa20.71■□□□□ 0.91
CNOT1-220ENST00000569916 LRRC9Q6ZRR7 1453 aa20.7■□□□□ 0.9
CNOT1-220ENST00000569916 KIDINS220Q9ULH0 1771 aa20.69■□□□□ 0.9
CNOT1-220ENST00000569916 ATP10AO60312 1499 aa20.69■□□□□ 0.9
CNOT1-220ENST00000569916 MLH3Q9UHC1 1453 aa20.69■□□□□ 0.9
CNOT1-220ENST00000569916 C9orf84Q5VXU9 1444 aa20.69■□□□□ 0.9
CNOT1-220ENST00000569916 PLEKHH2Q8IVE3 1493 aa20.69■□□□□ 0.9
CNOT1-220ENST00000569916 CFDP1Q9UEE9 299 aaPredicted RBP20.67■□□□□ 0.9
CNOT1-220ENST00000569916 ZNF777Q9ULD5 760 aaPredicted RBP20.67■□□□□ 0.9
CNOT1-220ENST00000569916 REREQ9P2R6 1566 aa20.67■□□□□ 0.9
CNOT1-220ENST00000569916 ARID4BQ4LE39 1312 aaPredicted RBP20.66■□□□□ 0.9
CNOT1-220ENST00000569916 KIAA1107Q9UPP5 1409 aa20.66■□□□□ 0.9
CNOT1-220ENST00000569916 RIMS1Q86UR5 1692 aaKnown RBP20.65■□□□□ 0.9
CNOT1-220ENST00000569916 INO80Q9ULG1 1556 aaPredicted RBP20.63■□□□□ 0.89
CNOT1-220ENST00000569916 FER1L4A9Z1Z3 1794 aa20.63■□□□□ 0.89
CNOT1-220ENST00000569916 PTPRMP28827 1452 aa20.62■□□□□ 0.89
CNOT1-220ENST00000569916 ATP7AQ04656 1500 aa20.6■□□□□ 0.89
CNOT1-220ENST00000569916 HNRNPMP52272 730 aaKnown RBP eCLIP20.6■□□□□ 0.89
CNOT1-220ENST00000569916 KANK4Q5T7N3 995 aaPredicted RBP20.6■□□□□ 0.89
CNOT1-220ENST00000569916 ZNF644Q9H582 1327 aaPredicted RBP20.59■□□□□ 0.89
CNOT1-220ENST00000569916 CAMSAP2Q08AD1 1489 aa20.59■□□□□ 0.89
CNOT1-220ENST00000569916 MBD5Q9P267 1494 aa20.59■□□□□ 0.89
CNOT1-220ENST00000569916 MYT1LQ9UL68 1186 aa20.58■□□□□ 0.89
CNOT1-220ENST00000569916 AGLP35573 1532 aa20.57■□□□□ 0.88
CNOT1-220ENST00000569916 SPAG9O60271 1321 aaKnown RBP20.54■□□□□ 0.88
CNOT1-220ENST00000569916 MLECQ14165 292 aa20.53■□□□□ 0.88
CNOT1-220ENST00000569916 PLXNC1O60486 1568 aa20.53■□□□□ 0.88
CNOT1-220ENST00000569916 ARHGEF5Q12774 1597 aa20.53■□□□□ 0.88
CNOT1-220ENST00000569916 ADGBQ8N7X0 1667 aa20.53■□□□□ 0.88
CNOT1-220ENST00000569916 CCDC141Q6ZP82 1450 aa20.52■□□□□ 0.88
CNOT1-220ENST00000569916 MYOM3Q5VTT5 1437 aa20.52■□□□□ 0.87
CNOT1-220ENST00000569916 APLP2Q06481 763 aa20.5■□□□□ 0.87
CNOT1-220ENST00000569916 MIA2Q96PC5 1412 aa20.48■□□□□ 0.87
CNOT1-220ENST00000569916 RTEL1-TNFRSF6BF6WH68 1400 aa20.47■□□□□ 0.87
CNOT1-220ENST00000569916 A2MP01023 1474 aa20.47■□□□□ 0.87
CNOT1-220ENST00000569916 PTPN23Q9H3S7 1636 aa20.44■□□□□ 0.86
CNOT1-220ENST00000569916 MAST1Q9Y2H9 1570 aa20.43■□□□□ 0.86
CNOT1-220ENST00000569916 C3P01024 1663 aa20.43■□□□□ 0.86
CNOT1-220ENST00000569916 CROCC2H7BZ55 1655 aa20.42■□□□□ 0.86
CNOT1-220ENST00000569916 RSPH4AQ5TD94 716 aa20.41■□□□□ 0.86
CNOT1-220ENST00000569916 MROH2AA6NES4 1674 aa20.4■□□□□ 0.86
CNOT1-220ENST00000569916 LMTK3Q96Q04 1460 aa20.4■□□□□ 0.86
CNOT1-220ENST00000569916 FGD6Q6ZV73 1430 aa20.38■□□□□ 0.85
CNOT1-220ENST00000569916 PREX1Q8TCU6 1659 aa20.38■□□□□ 0.85
CNOT1-220ENST00000569916 TCOF1Q13428 1488 aaKnown RBP20.37■□□□□ 0.85
CNOT1-220ENST00000569916 PLPPR3Q6T4P5 718 aa20.37■□□□□ 0.85
CNOT1-220ENST00000569916 CLTCQ00610 1675 aaKnown RBP20.37■□□□□ 0.85
CNOT1-220ENST00000569916 DNMT1P26358 1616 aaKnown RBP20.36■□□□□ 0.85
CNOT1-220ENST00000569916 CNTLNQ9NXG0 1405 aa20.36■□□□□ 0.85
CNOT1-220ENST00000569916 DHX29Q7Z478 1369 aaKnown RBP20.35■□□□□ 0.85
CNOT1-220ENST00000569916 TSPY4P0CV99 314 aa20.33■□□□□ 0.85
CNOT1-220ENST00000569916 TSPY10P0CW01 314 aa20.33■□□□□ 0.85
CNOT1-220ENST00000569916 CEBPAP49715 358 aaPredicted RBP20.33■□□□□ 0.85
CNOT1-220ENST00000569916 SHANK2Q9UPX8 1470 aa20.32■□□□□ 0.84
CNOT1-220ENST00000569916 ABCC5O15440 1437 aa20.3■□□□□ 0.84
CNOT1-220ENST00000569916 ESF1Q9H501 851 aaKnown RBP20.3■□□□□ 0.84
CNOT1-220ENST00000569916 EIF2AK4Q9P2K8 1649 aaKnown RBP20.3■□□□□ 0.84
CNOT1-220ENST00000569916 DAPK1P53355 1430 aa20.28■□□□□ 0.84
CNOT1-220ENST00000569916 RNF17Q9BXT8 1623 aaKnown RBP20.28■□□□□ 0.84
CNOT1-220ENST00000569916 SETD1BQ9UPS6 1966 aaKnown RBP20.27■□□□□ 0.84
CNOT1-220ENST00000569916 GGT6Q6P531 493 aa20.27■□□□□ 0.84
CNOT1-220ENST00000569916 FAM135AQ9P2D6 1515 aa20.27■□□□□ 0.83
CNOT1-220ENST00000569916 KDM5DQ9BY66 1539 aa20.25■□□□□ 0.83
CNOT1-220ENST00000569916 DUOX2Q9NRD8 1548 aa20.25■□□□□ 0.83
CNOT1-220ENST00000569916 ZMYM3Q14202 1370 aa20.24■□□□□ 0.83
CNOT1-220ENST00000569916 KIF3BO15066 747 aa20.24■□□□□ 0.83
CNOT1-220ENST00000569916 NPATQ14207 1427 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms