RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-222ENST00000568034 ARHGAP5Q13017 1502 aa28.08■■■□□ 2.09
COMMD4-222ENST00000568034 CFAP74Q9C0B2 1584 aa28.07■■■□□ 2.08
COMMD4-222ENST00000568034 ITSN2Q9NZM3 1697 aa28.07■■■□□ 2.08
COMMD4-222ENST00000568034 COL17A1Q9UMD9 1497 aaPredicted RBP28.05■■■□□ 2.08
COMMD4-222ENST00000568034 PHLDB1Q86UU1 1377 aa28.04■■■□□ 2.08
COMMD4-222ENST00000568034 AKNAQ7Z591 1439 aa28.03■■■□□ 2.08
COMMD4-222ENST00000568034 EFCAB2Q5VUJ9 269 aa28.02■■■□□ 2.08
COMMD4-222ENST00000568034 MYOM3Q5VTT5 1437 aa28.01■■■□□ 2.07
COMMD4-222ENST00000568034 SAMD9LQ8IVG5 1584 aa28■■■□□ 2.07
COMMD4-222ENST00000568034 PPARGC1BQ86YN6 1023 aaKnown RBP28■■■□□ 2.07
COMMD4-222ENST00000568034 KDM6BO15054 1643 aa27.99■■■□□ 2.07
COMMD4-222ENST00000568034 CFDP1Q9UEE9 299 aaPredicted RBP27.98■■■□□ 2.07
COMMD4-222ENST00000568034 ABCC1P33527 1531 aa27.97■■■□□ 2.07
COMMD4-222ENST00000568034 ADGRL1O94910 1474 aa27.96■■■□□ 2.07
COMMD4-222ENST00000568034 ARHGEF12Q9NZN5 1544 aa27.94■■■□□ 2.06
COMMD4-222ENST00000568034 FRMPD1Q5SYB0 1578 aa27.94■■■□□ 2.06
COMMD4-222ENST00000568034 MIA2Q96PC5 1412 aa27.93■■■□□ 2.06
COMMD4-222ENST00000568034 SCAPERQ9BY12 1400 aa27.92■■■□□ 2.06
COMMD4-222ENST00000568034 ZNF644Q9H582 1327 aaPredicted RBP27.92■■■□□ 2.06
COMMD4-222ENST00000568034 ZNF777Q9ULD5 760 aaPredicted RBP27.9■■■□□ 2.06
COMMD4-222ENST00000568034 FGD6Q6ZV73 1430 aa27.9■■■□□ 2.06
COMMD4-222ENST00000568034 RICTORQ6R327 1708 aa27.89■■■□□ 2.06
COMMD4-222ENST00000568034 DENND4BO75064 1496 aaPredicted RBP27.89■■■□□ 2.06
COMMD4-222ENST00000568034 CAMSAP2Q08AD1 1489 aa27.89■■■□□ 2.06
COMMD4-222ENST00000568034 SYCP2Q9BX26 1530 aa27.89■■■□□ 2.06
COMMD4-222ENST00000568034 POGZQ7Z3K3 1410 aa27.88■■■□□ 2.05
COMMD4-222ENST00000568034 KIAA1107Q9UPP5 1409 aa27.88■■■□□ 2.05
COMMD4-222ENST00000568034 PLEKHH2Q8IVE3 1493 aa27.87■■■□□ 2.05
COMMD4-222ENST00000568034 RAPGEF3O95398 923 aa27.85■■■□□ 2.05
COMMD4-222ENST00000568034 PTPN23Q9H3S7 1636 aa27.85■■■□□ 2.05
COMMD4-222ENST00000568034 TRAPPC8Q9Y2L5 1435 aa27.84■■■□□ 2.05
COMMD4-222ENST00000568034 TCOF1Q13428 1488 aaKnown RBP27.84■■■□□ 2.05
COMMD4-222ENST00000568034 MBD5Q9P267 1494 aa27.84■■■□□ 2.05
COMMD4-222ENST00000568034 KDM5CP41229 1560 aa27.82■■■□□ 2.04
COMMD4-222ENST00000568034 ZNF518AQ6AHZ1 1483 aa27.8■■■□□ 2.04
COMMD4-222ENST00000568034 ZMYM4Q5VZL5 1548 aa27.8■■■□□ 2.04
COMMD4-222ENST00000568034 HNRNPMP52272 730 aaKnown RBP eCLIP27.79■■■□□ 2.04
COMMD4-222ENST00000568034 ARHGEF5Q12774 1597 aa27.77■■■□□ 2.04
COMMD4-222ENST00000568034 AFAP1Q8N556 730 aa27.76■■■□□ 2.03
COMMD4-222ENST00000568034 RRBP1Q9P2E9 1410 aaKnown RBP27.74■■■□□ 2.03
COMMD4-222ENST00000568034 CCDC141Q6ZP82 1450 aa27.73■■■□□ 2.03
COMMD4-222ENST00000568034 HECW2Q9P2P5 1572 aa27.7■■■□□ 2.03
COMMD4-222ENST00000568034 MLH3Q9UHC1 1453 aa27.7■■■□□ 2.02
COMMD4-222ENST00000568034 MAGI2Q86UL8 1455 aa27.69■■■□□ 2.02
COMMD4-222ENST00000568034 INO80Q9ULG1 1556 aaPredicted RBP27.68■■■□□ 2.02
COMMD4-222ENST00000568034 YEATS2Q9ULM3 1422 aa27.67■■■□□ 2.02
COMMD4-222ENST00000568034 ARHGEF40Q8TER5 1519 aa27.67■■■□□ 2.02
COMMD4-222ENST00000568034 DNMT1P26358 1616 aaKnown RBP27.67■■■□□ 2.02
COMMD4-222ENST00000568034 ZFYVE16Q7Z3T8 1539 aa27.67■■■□□ 2.02
COMMD4-222ENST00000568034 ABCC5O15440 1437 aa27.67■■■□□ 2.02
COMMD4-222ENST00000568034 KIDINS220Q9ULH0 1771 aa27.65■■■□□ 2.02
COMMD4-222ENST00000568034 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.65■■■□□ 2.02
COMMD4-222ENST00000568034 RSPH4AQ5TD94 716 aa27.65■■■□□ 2.02
COMMD4-222ENST00000568034 CROCC2H7BZ55 1655 aa27.64■■■□□ 2.02
COMMD4-222ENST00000568034 DAPK1P53355 1430 aa27.64■■■□□ 2.02
COMMD4-222ENST00000568034 FAM50AQ14320 339 aaKnown RBP27.63■■■□□ 2.01
COMMD4-222ENST00000568034 ATP7AQ04656 1500 aa27.62■■■□□ 2.01
COMMD4-222ENST00000568034 MAST1Q9Y2H9 1570 aa27.62■■■□□ 2.01
COMMD4-222ENST00000568034 ABCA6Q8N139 1617 aa27.62■■■□□ 2.01
COMMD4-222ENST00000568034 SPAG9O60271 1321 aaKnown RBP27.62■■■□□ 2.01
COMMD4-222ENST00000568034 SHANK2Q9UPX8 1470 aa27.61■■■□□ 2.01
COMMD4-222ENST00000568034 DIP2CQ9Y2E4 1556 aa27.6■■■□□ 2.01
COMMD4-222ENST00000568034 RTEL1-TNFRSF6BF6WH68 1400 aa27.6■■■□□ 2.01
COMMD4-222ENST00000568034 C9orf84Q5VXU9 1444 aa27.58■■■□□ 2
COMMD4-222ENST00000568034 PTPRKQ15262 1439 aa27.57■■■□□ 2
COMMD4-222ENST00000568034 SIGLEC1Q9BZZ2 1709 aa27.53■■■□□ 2
COMMD4-222ENST00000568034 ATP10AO60312 1499 aa27.53■■■□□ 2
COMMD4-222ENST00000568034 TSPY4P0CV99 314 aa27.52■■■□□ 2
COMMD4-222ENST00000568034 TSPY10P0CW01 314 aa27.52■■■□□ 2
COMMD4-222ENST00000568034 REREQ9P2R6 1566 aa27.52■■■□□ 2
COMMD4-222ENST00000568034 PLXNC1O60486 1568 aa27.51■■□□□ 1.99
COMMD4-222ENST00000568034 ADGBQ8N7X0 1667 aa27.5■■□□□ 1.99
COMMD4-222ENST00000568034 MYT1LQ9UL68 1186 aa27.5■■□□□ 1.99
COMMD4-222ENST00000568034 ADGRL2O95490 1459 aa27.49■■□□□ 1.99
COMMD4-222ENST00000568034 A2MP01023 1474 aa27.44■■□□□ 1.98
COMMD4-222ENST00000568034 CHIC2Q9UKJ5 165 aa27.44■■□□□ 1.98
COMMD4-222ENST00000568034 NCOA1Q15788 1441 aa27.43■■□□□ 1.98
COMMD4-222ENST00000568034 AGLP35573 1532 aa27.41■■□□□ 1.98
COMMD4-222ENST00000568034 ITGAEP38570 1179 aa27.4■■□□□ 1.98
COMMD4-222ENST00000568034 AEBP2Q6ZN18 517 aaPredicted RBP27.4■■□□□ 1.98
COMMD4-222ENST00000568034 ROCK1Q13464 1354 aa27.39■■□□□ 1.98
COMMD4-222ENST00000568034 DHX29Q7Z478 1369 aaKnown RBP27.39■■□□□ 1.98
COMMD4-222ENST00000568034 ANKRD30AQ9BXX3 1397 aa27.39■■□□□ 1.98
COMMD4-222ENST00000568034 KIF15Q9NS87 1388 aa27.39■■□□□ 1.98
COMMD4-222ENST00000568034 DUOX2Q9NRD8 1548 aa27.37■■□□□ 1.97
COMMD4-222ENST00000568034 RRP7BPQ9NSQ0 103 aa27.35■■□□□ 1.97
COMMD4-222ENST00000568034 BCORL1Q5H9F3 1711 aa27.33■■□□□ 1.96
COMMD4-222ENST00000568034 ERBINQ96RT1 1412 aa27.3■■□□□ 1.96
COMMD4-222ENST00000568034 EIF2AK4Q9P2K8 1649 aaKnown RBP27.3■■□□□ 1.96
COMMD4-222ENST00000568034 ARID4BQ4LE39 1312 aaPredicted RBP27.29■■□□□ 1.96
COMMD4-222ENST00000568034 ADAMTSL3P82987 1691 aa27.26■■□□□ 1.95
COMMD4-222ENST00000568034 NAIPQ13075 1403 aa27.24■■□□□ 1.95
COMMD4-222ENST00000568034 ANKRD50Q9ULJ7 1429 aa27.24■■□□□ 1.95
COMMD4-222ENST00000568034 GCC2Q8IWJ2 1684 aa27.24■■□□□ 1.95
COMMD4-222ENST00000568034 RNF17Q9BXT8 1623 aaKnown RBP27.24■■□□□ 1.95
COMMD4-222ENST00000568034 HFM1A2PYH4 1435 aa27.24■■□□□ 1.95
COMMD4-222ENST00000568034 KIF3BO15066 747 aa27.22■■□□□ 1.95
COMMD4-222ENST00000568034 MROH1Q8NDA8 1641 aa27.22■■□□□ 1.95
COMMD4-222ENST00000568034 MLECQ14165 292 aa27.21■■□□□ 1.95
COMMD4-222ENST00000568034 DEPDC5O75140 1603 aa27.19■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms