RNA–Protein interactions for RNA: ENST00000567060.5

CLN6-208, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 945 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-208ENST00000567060 FANCAO15360 1455 aa26.36■■□□□ 1.81
CLN6-208ENST00000567060 HSPA2P54652 639 aa26.36■■□□□ 1.81
CLN6-208ENST00000567060 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP26.35■■□□□ 1.812e-6■■■■□ 19.9
CLN6-208ENST00000567060 RIMS1Q86UR5 1692 aaKnown RBP26.34■■□□□ 1.81
CLN6-208ENST00000567060 MAP3K1Q13233 1512 aa26.34■■□□□ 1.81
CLN6-208ENST00000567060 YEATS2Q9ULM3 1422 aa26.31■■□□□ 1.8
CLN6-208ENST00000567060 PLPPR3Q6T4P5 718 aa26.3■■□□□ 1.8
CLN6-208ENST00000567060 SIGLEC1Q9BZZ2 1709 aa26.3■■□□□ 1.8
CLN6-208ENST00000567060 TROQ12816 1431 aaPredicted RBP26.3■■□□□ 1.8
CLN6-208ENST00000567060 ZMYM4Q5VZL5 1548 aa26.28■■□□□ 1.8
CLN6-208ENST00000567060 TTC37Q6PGP7 1564 aa26.28■■□□□ 1.8
CLN6-208ENST00000567060 POGZQ7Z3K3 1410 aa26.26■■□□□ 1.79
CLN6-208ENST00000567060 TIAM1Q13009 1591 aa26.25■■□□□ 1.79
CLN6-208ENST00000567060 CFAP74Q9C0B2 1584 aa26.24■■□□□ 1.79
CLN6-208ENST00000567060 APLP2Q06481 763 aa26.24■■□□□ 1.79
CLN6-208ENST00000567060 MLECQ14165 292 aa26.24■■□□□ 1.79
CLN6-208ENST00000567060 ZFYVE16Q7Z3T8 1539 aa26.24■■□□□ 1.79
CLN6-208ENST00000567060 MAGI2Q86UL8 1455 aa26.23■■□□□ 1.79
CLN6-208ENST00000567060 KIF14Q15058 1648 aa26.21■■□□□ 1.79
CLN6-208ENST00000567060 PLCH2O75038 1416 aa26.21■■□□□ 1.79
CLN6-208ENST00000567060 SCAPERQ9BY12 1400 aa26.21■■□□□ 1.79
CLN6-208ENST00000567060 MTUS2Q5JR59 1369 aa26.2■■□□□ 1.79
CLN6-208ENST00000567060 EHBP1L1Q8N3D4 1523 aa26.2■■□□□ 1.79
CLN6-208ENST00000567060 CERKQ8TCT0 537 aa26.18■■□□□ 1.78
CLN6-208ENST00000567060 LRRC9Q6ZRR7 1453 aa26.14■■□□□ 1.78
CLN6-208ENST00000567060 ATP10AO60312 1499 aa26.12■■□□□ 1.77
CLN6-208ENST00000567060 CEBPAP49715 358 aaPredicted RBP26.11■■□□□ 1.77
CLN6-208ENST00000567060 FER1L4A9Z1Z3 1794 aa26.1■■□□□ 1.77
CLN6-208ENST00000567060 ARHGEF12Q9NZN5 1544 aa26.1■■□□□ 1.77
CLN6-208ENST00000567060 EFCAB2Q5VUJ9 269 aa26.1■■□□□ 1.77
CLN6-208ENST00000567060 SUPT6HQ7KZ85 1726 aaKnown RBP26.08■■□□□ 1.76
CLN6-208ENST00000567060 C9orf84Q5VXU9 1444 aa26.05■■□□□ 1.76
CLN6-208ENST00000567060 AFAP1Q8N556 730 aa26.05■■□□□ 1.76
CLN6-208ENST00000567060 MYO5CQ9NQX4 1742 aa26.05■■□□□ 1.76
CLN6-208ENST00000567060 NCOA2Q15596 1464 aa25.99■■□□□ 1.75
CLN6-208ENST00000567060 KANK4Q5T7N3 995 aaPredicted RBP25.99■■□□□ 1.75
CLN6-208ENST00000567060 CCNB3Q8WWL7 1395 aa25.98■■□□□ 1.75
CLN6-208ENST00000567060 PREX2Q70Z35 1606 aa25.98■■□□□ 1.75
CLN6-208ENST00000567060 PREX1Q8TCU6 1659 aa25.97■■□□□ 1.75
CLN6-208ENST00000567060 ZNF518AQ6AHZ1 1483 aa25.97■■□□□ 1.75
CLN6-208ENST00000567060 ITSN2Q9NZM3 1697 aa25.96■■□□□ 1.75
CLN6-208ENST00000567060 STRCQ7RTU9 1775 aa25.95■■□□□ 1.75
CLN6-208ENST00000567060 GPATCH8Q9UKJ3 1502 aaKnown RBP25.95■■□□□ 1.74
CLN6-208ENST00000567060 CDC42BPAQ5VT25 1732 aa25.95■■□□□ 1.74
CLN6-208ENST00000567060 KDM5CP41229 1560 aa25.94■■□□□ 1.74
CLN6-208ENST00000567060 DMRT2Q9Y5R5 561 aa25.93■■□□□ 1.74
CLN6-208ENST00000567060 CDC42BPBQ9Y5S2 1711 aa25.92■■□□□ 1.74
CLN6-208ENST00000567060 ARHGAP5Q13017 1502 aa25.92■■□□□ 1.74
CLN6-208ENST00000567060 SETD1BQ9UPS6 1966 aaKnown RBP25.91■■□□□ 1.74
CLN6-208ENST00000567060 MYT1LQ9UL68 1186 aa25.89■■□□□ 1.74
CLN6-208ENST00000567060 UHRF1BP1Q6BDS2 1440 aa25.88■■□□□ 1.73
CLN6-208ENST00000567060 DIP2CQ9Y2E4 1556 aa25.88■■□□□ 1.73
CLN6-208ENST00000567060 ILDR2Q71H61 639 aa25.87■■□□□ 1.73
CLN6-208ENST00000567060 CFDP1Q9UEE9 299 aaPredicted RBP25.87■■□□□ 1.73
CLN6-208ENST00000567060 MLH3Q9UHC1 1453 aa25.86■■□□□ 1.73
CLN6-208ENST00000567060 MYOM3Q5VTT5 1437 aa25.86■■□□□ 1.73
CLN6-208ENST00000567060 MIA2Q96PC5 1412 aa25.86■■□□□ 1.73
CLN6-208ENST00000567060 PLEKHH2Q8IVE3 1493 aa25.85■■□□□ 1.73
CLN6-208ENST00000567060 TRAPPC8Q9Y2L5 1435 aa25.85■■□□□ 1.73
CLN6-208ENST00000567060 REREQ9P2R6 1566 aa25.85■■□□□ 1.73
CLN6-208ENST00000567060 ABCA6Q8N139 1617 aa25.82■■□□□ 1.72
CLN6-208ENST00000567060 PTPRTO14522 1441 aa25.81■■□□□ 1.72
CLN6-208ENST00000567060 DISP3Q9P2K9 1392 aa25.81■■□□□ 1.72
CLN6-208ENST00000567060 KIAA1107Q9UPP5 1409 aa25.8■■□□□ 1.72
CLN6-208ENST00000567060 C3P01024 1663 aa25.8■■□□□ 1.72
CLN6-208ENST00000567060 AGLP35573 1532 aa25.79■■□□□ 1.72
CLN6-208ENST00000567060 ABCC1P33527 1531 aa25.78■■□□□ 1.72
CLN6-208ENST00000567060 SAMD9LQ8IVG5 1584 aa25.77■■□□□ 1.72
CLN6-208ENST00000567060 ESF1Q9H501 851 aaKnown RBP25.75■■□□□ 1.71
CLN6-208ENST00000567060 RSPH4AQ5TD94 716 aa25.73■■□□□ 1.71
CLN6-208ENST00000567060 LTBP4Q8N2S1 1624 aa25.73■■□□□ 1.71
CLN6-208ENST00000567060 FGD6Q6ZV73 1430 aa25.72■■□□□ 1.71
CLN6-208ENST00000567060 SOCS7O14512 581 aa25.72■■□□□ 1.71
CLN6-208ENST00000567060 ZNF777Q9ULD5 760 aaPredicted RBP25.72■■□□□ 1.71
CLN6-208ENST00000567060 KIDINS220Q9ULH0 1771 aa25.72■■□□□ 1.71
CLN6-208ENST00000567060 CAMSAP2Q08AD1 1489 aa25.71■■□□□ 1.71
CLN6-208ENST00000567060 NCOA1Q15788 1441 aa25.7■■□□□ 1.7
CLN6-208ENST00000567060 TCOF1Q13428 1488 aaKnown RBP25.69■■□□□ 1.7
CLN6-208ENST00000567060 CNTLNQ9NXG0 1405 aa25.68■■□□□ 1.7
CLN6-208ENST00000567060 SYCP2Q9BX26 1530 aa25.68■■□□□ 1.7
CLN6-208ENST00000567060 PTPN23Q9H3S7 1636 aa25.67■■□□□ 1.7
CLN6-208ENST00000567060 ARHGEF5Q12774 1597 aa25.65■■□□□ 1.7
CLN6-208ENST00000567060 MBD5Q9P267 1494 aa25.65■■□□□ 1.7
CLN6-208ENST00000567060 ZMYM3Q14202 1370 aa25.64■■□□□ 1.69
CLN6-208ENST00000567060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.64■■□□□ 1.691e-10■■□□□ 12.6
CLN6-208ENST00000567060 HNRNPMP52272 730 aaKnown RBP eCLIP25.63■■□□□ 1.69
CLN6-208ENST00000567060 ZNF644Q9H582 1327 aaPredicted RBP25.63■■□□□ 1.69
CLN6-208ENST00000567060 NPATQ14207 1427 aa25.62■■□□□ 1.69
CLN6-208ENST00000567060 CCDC141Q6ZP82 1450 aa25.61■■□□□ 1.69
CLN6-208ENST00000567060 NCKAP5LQ9HCH0 1330 aa25.61■■□□□ 1.69
CLN6-208ENST00000567060 IQSEC2Q5JU85 1478 aa25.6■■□□□ 1.69
CLN6-208ENST00000567060 PPARGC1BQ86YN6 1023 aaKnown RBP25.6■■□□□ 1.69
CLN6-208ENST00000567060 SPAG9O60271 1321 aaKnown RBP25.6■■□□□ 1.69
CLN6-208ENST00000567060 CAMSAP1Q5T5Y3 1602 aa25.59■■□□□ 1.69
CLN6-208ENST00000567060 RRBP1Q9P2E9 1410 aaKnown RBP25.59■■□□□ 1.69
CLN6-208ENST00000567060 RTEL1-TNFRSF6BF6WH68 1400 aa25.56■■□□□ 1.68
CLN6-208ENST00000567060 MROH2AA6NES4 1674 aa25.55■■□□□ 1.68
CLN6-208ENST00000567060 ZNF335Q9H4Z2 1342 aaPredicted RBP25.55■■□□□ 1.68
CLN6-208ENST00000567060 SPATA31D1Q6ZQQ2 1576 aa25.54■■□□□ 1.68
CLN6-208ENST00000567060 DNMT1P26358 1616 aaKnown RBP25.53■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms