RNA–Protein interactions for RNA: ENST00000566376.3

TCF4-233, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 462 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-233	ENST00000566376	MNX1	P50219	401 aa	Predicted RBP	11.63	□□□□□ -0.55
TCF4-233	ENST00000566376	ERICH3	Q5RHP9	1530 aa		11.63	□□□□□ -0.55
TCF4-233	ENST00000566376	ST18	O60284	1047 aa		11.62	□□□□□ -0.55
TCF4-233	ENST00000566376	GRIN2A	Q12879	1464 aa		11.62	□□□□□ -0.55
TCF4-233	ENST00000566376	RUSC2	Q8N2Y8	1516 aa		11.61	□□□□□ -0.55
TCF4-233	ENST00000566376	BMP2K	Q9NSY1	1161 aa	Predicted RBP	11.6	□□□□□ -0.55
TCF4-233	ENST00000566376	NUP160	Q12769	1436 aa		11.59	□□□□□ -0.55
TCF4-233	ENST00000566376	SLAIN1	Q8ND83	568 aa		11.57	□□□□□ -0.56
TCF4-233	ENST00000566376	COLQ	Q9Y215	455 aa	Predicted RBP	11.57	□□□□□ -0.56
TCF4-233	ENST00000566376	CUL7	Q14999	1698 aa		11.56	□□□□□ -0.56
TCF4-233	ENST00000566376	TRIM41	Q8WV44	630 aa		11.56	□□□□□ -0.56
TCF4-233	ENST00000566376	TRPC6	Q9Y210	931 aa		11.55	□□□□□ -0.56
TCF4-233	ENST00000566376	FHAD1	B1AJZ9	1412 aa		11.52	□□□□□ -0.56
TCF4-233	ENST00000566376	KIF12	Q96FN5	646 aa		11.52	□□□□□ -0.57
TCF4-233	ENST00000566376	SPDYE4	A6NLX3	237 aa		11.51	□□□□□ -0.57
TCF4-233	ENST00000566376	KIF13A	Q9H1H9	1805 aa		11.51	□□□□□ -0.57
TCF4-233	ENST00000566376	CCDC61	Q9Y6R9	512 aa		11.5	□□□□□ -0.57
TCF4-233	ENST00000566376	TIE1	P35590	1138 aa		11.47	□□□□□ -0.57
TCF4-233	ENST00000566376	CTTNBP2	Q8WZ74	1663 aa		11.46	□□□□□ -0.57
TCF4-233	ENST00000566376	CHMP7	Q8WUX9	453 aa	Predicted RBP	11.45	□□□□□ -0.58
TCF4-233	ENST00000566376	MAP3K13	O43283	966 aa		11.44	□□□□□ -0.58
TCF4-233	ENST00000566376	TTLL13P	A6NNM8	815 aa		11.43	□□□□□ -0.58
TCF4-233	ENST00000566376	ADCY10	Q96PN6	1610 aa		11.42	□□□□□ -0.58
TCF4-233	ENST00000566376	IGF1R	P08069	1367 aa		11.41	□□□□□ -0.58
TCF4-233	ENST00000566376	KIF27	Q86VH2	1401 aa		11.41	□□□□□ -0.58
TCF4-233	ENST00000566376	CYB5RL	Q6IPT4	315 aa		11.4	□□□□□ -0.58
TCF4-233	ENST00000566376	MARVELD3	Q96A59	401 aa		11.4	□□□□□ -0.58
TCF4-233	ENST00000566376	TRIM35	Q9UPQ4	493 aa		11.39	□□□□□ -0.59
TCF4-233	ENST00000566376	FBXO3	Q9UK99	471 aa		11.38	□□□□□ -0.59
TCF4-233	ENST00000566376	IQGAP2	Q13576	1575 aa		11.37	□□□□□ -0.59
TCF4-233	ENST00000566376	TMEM121B	Q9BXQ6	578 aa	Predicted RBP	11.36	□□□□□ -0.59
TCF4-233	ENST00000566376	KIAA0586	Q9BVV6	1533 aa		11.35	□□□□□ -0.59
TCF4-233	ENST00000566376	IER5L	Q5T953	404 aa		11.35	□□□□□ -0.59
TCF4-233	ENST00000566376	PRG4	Q92954	1404 aa	Predicted RBP	11.35	□□□□□ -0.59
TCF4-233	ENST00000566376	KIAA0556	O60303	1618 aa		11.32	□□□□□ -0.6
TCF4-233	ENST00000566376	DISP1	Q96F81	1524 aa		11.32	□□□□□ -0.6
TCF4-233	ENST00000566376	DIP2B	Q9P265	1576 aa		11.32	□□□□□ -0.6
TCF4-233	ENST00000566376	PPRC1	Q5VV67	1664 aa	Known RBP	11.3	□□□□□ -0.6
TCF4-233	ENST00000566376	UGGT2	Q9NYU1	1516 aa		11.3	□□□□□ -0.6
TCF4-233	ENST00000566376	CARMIL1	Q5VZK9	1371 aa		11.3	□□□□□ -0.6
TCF4-233	ENST00000566376	SNPH	O15079	494 aa		11.3	□□□□□ -0.6
TCF4-233	ENST00000566376	PLCG2	P16885	1265 aa		11.3	□□□□□ -0.6
TCF4-233	ENST00000566376	MAPKBP1	O60336	1514 aa		11.29	□□□□□ -0.6
TCF4-233	ENST00000566376	PRX	Q9BXM0	1461 aa		11.28	□□□□□ -0.6
TCF4-233	ENST00000566376	TSPOAP1	O95153	1857 aa		11.27	□□□□□ -0.6
TCF4-233	ENST00000566376	RAPGEF2	Q9Y4G8	1499 aa		11.27	□□□□□ -0.6
TCF4-233	ENST00000566376	ABCC2	Q92887	1545 aa		11.25	□□□□□ -0.61
TCF4-233	ENST00000566376	ZCCHC11	Q5TAX3	1644 aa	Known RBP	11.25	□□□□□ -0.61
TCF4-233	ENST00000566376	PROM2	Q8N271	834 aa		11.25	□□□□□ -0.61
TCF4-233	ENST00000566376	JPH4	Q96JJ6	628 aa		11.25	□□□□□ -0.61
TCF4-233	ENST00000566376	SAMD9	Q5K651	1589 aa		11.24	□□□□□ -0.61
TCF4-233	ENST00000566376	EMP3	P54852	163 aa		11.23	□□□□□ -0.61
TCF4-233	ENST00000566376	PCDHB13	Q9Y5F0	798 aa		11.23	□□□□□ -0.61
TCF4-233	ENST00000566376	RASEF	Q8IZ41	740 aa		11.21	□□□□□ -0.61
TCF4-233	ENST00000566376	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	11.2	□□□□□ -0.62
TCF4-233	ENST00000566376	KIF21B	O75037	1637 aa		11.2	□□□□□ -0.62
TCF4-233	ENST00000566376	ABCA8	O94911	1581 aa		11.2	□□□□□ -0.62
TCF4-233	ENST00000566376	TMEM106C	Q9BVX2	250 aa		11.19	□□□□□ -0.62
TCF4-233	ENST00000566376	MAP3K4	Q9Y6R4	1608 aa		11.19	□□□□□ -0.62
TCF4-233	ENST00000566376	ABCC10	Q5T3U5	1492 aa		11.19	□□□□□ -0.62
TCF4-233	ENST00000566376	UHRF1BP1L	A0JNW5	1464 aa		11.18	□□□□□ -0.62
TCF4-233	ENST00000566376	PLEKHG5	O94827	1062 aa		11.17	□□□□□ -0.62
TCF4-233	ENST00000566376	KRTAP3-3	Q9BYR6	98 aa		11.17	□□□□□ -0.62
TCF4-233	ENST00000566376	KRTAP3-2	Q9BYR7	98 aa		11.17	□□□□□ -0.62
TCF4-233	ENST00000566376	KDM5B	Q9UGL1	1544 aa		11.16	□□□□□ -0.62
TCF4-233	ENST00000566376	FAM205C	A6NFA0	338 aa		11.16	□□□□□ -0.62
TCF4-233	ENST00000566376	LRRIQ1	Q96JM4	1722 aa		11.15	□□□□□ -0.62
TCF4-233	ENST00000566376	GLI2	P10070	1586 aa		11.15	□□□□□ -0.62
TCF4-233	ENST00000566376	TNIK	Q9UKE5	1360 aa		11.15	□□□□□ -0.63
TCF4-233	ENST00000566376	HS3ST6	Q96QI5	342 aa		11.14	□□□□□ -0.63
TCF4-233	ENST00000566376	PLB1	Q6P1J6	1458 aa		11.13	□□□□□ -0.63
TCF4-233	ENST00000566376	PTPRG	P23470	1445 aa		11.12	□□□□□ -0.63
TCF4-233	ENST00000566376	IRX5	P78411	483 aa	Predicted RBP	11.12	□□□□□ -0.63
TCF4-233	ENST00000566376	SGIP1	Q9BQI5	828 aa		11.12	□□□□□ -0.63
TCF4-233	ENST00000566376	CARMIL2	Q6F5E8	1435 aa		11.11	□□□□□ -0.63
TCF4-233	ENST00000566376	POTEB3	A0JP26	581 aa		11.11	□□□□□ -0.63
TCF4-233	ENST00000566376	POTEB	Q6S5H4	581 aa		11.11	□□□□□ -0.63
TCF4-233	ENST00000566376	MIER1	Q8N108	512 aa		11.11	□□□□□ -0.63
TCF4-233	ENST00000566376	UACA	Q9BZF9	1416 aa		11.1	□□□□□ -0.63
TCF4-233	ENST00000566376	IFNL1	Q8IU54	200 aa		11.1	□□□□□ -0.63
TCF4-233	ENST00000566376	CFAP43	Q8NDM7	1665 aa		11.1	□□□□□ -0.63
TCF4-233	ENST00000566376	KDM6B	O15054	1643 aa		11.09	□□□□□ -0.63
TCF4-233	ENST00000566376	RAPGEF6	Q8TEU7	1601 aa		11.09	□□□□□ -0.63
TCF4-233	ENST00000566376	OCEL1	Q9H607	264 aa		11.09	□□□□□ -0.63
TCF4-233	ENST00000566376	ASXL2	Q76L83	1435 aa		11.09	□□□□□ -0.63
TCF4-233	ENST00000566376	EEA1	Q15075	1411 aa		11.08	□□□□□ -0.64
TCF4-233	ENST00000566376	EPRS	P07814	1512 aa	Known RBP	11.07	□□□□□ -0.64
TCF4-233	ENST00000566376	GOLGA3	Q08378	1498 aa		11.06	□□□□□ -0.64
TCF4-233	ENST00000566376	VASP	P50552	380 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-233	ENST00000566376	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.05	□□□□□ -0.64
TCF4-233	ENST00000566376	ABCA9	Q8IUA7	1624 aa		11.03	□□□□□ -0.64
TCF4-233	ENST00000566376	WDR7	Q9Y4E6	1490 aa		11.03	□□□□□ -0.64
TCF4-233	ENST00000566376	COL17A1	Q9UMD9	1497 aa	Predicted RBP	11.02	□□□□□ -0.65
TCF4-233	ENST00000566376	EFCAB5	A4FU69	1503 aa		11.02	□□□□□ -0.65
TCF4-233	ENST00000566376	NUP153	P49790	1475 aa	Known RBP	11.01	□□□□□ -0.65
TCF4-233	ENST00000566376	C3orf67	Q6ZVT6	689 aa		11.01	□□□□□ -0.65
TCF4-233	ENST00000566376	RNF166	Q96A37	237 aa	Predicted RBP	11.01	□□□□□ -0.65
TCF4-233	ENST00000566376	FHOD3	Q2V2M9	1422 aa		11.01	□□□□□ -0.65
TCF4-233	ENST00000566376	TTBK1	Q5TCY1	1321 aa	Predicted RBP	11	□□□□□ -0.65
TCF4-233	ENST00000566376	ATP10B	O94823	1461 aa		10.99	□□□□□ -0.65

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms