RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 ZFYVE16Q7Z3T8 1539 aa30.56■■■□□ 2.48
CLN3-218ENST00000565688 POGZQ7Z3K3 1410 aa30.56■■■□□ 2.48
CLN3-218ENST00000565688 CASKIN1Q8WXD9 1431 aa30.55■■■□□ 2.48
CLN3-218ENST00000565688 CCDC18Q5T9S5 1454 aa30.52■■■□□ 2.48
CLN3-218ENST00000565688 MADDQ8WXG6 1647 aa30.52■■■□□ 2.48
CLN3-218ENST00000565688 LRRIQ1Q96JM4 1722 aa30.52■■■□□ 2.48
CLN3-218ENST00000565688 YEATS2Q9ULM3 1422 aa30.51■■■□□ 2.47
CLN3-218ENST00000565688 PCF11O94913 1555 aaKnown RBP30.49■■■□□ 2.47
CLN3-218ENST00000565688 ARHGAP5Q13017 1502 aa30.47■■■□□ 2.47
CLN3-218ENST00000565688 FYCO1Q9BQS8 1478 aa30.44■■■□□ 2.46
CLN3-218ENST00000565688 ZNF518AQ6AHZ1 1483 aa30.43■■■□□ 2.46
CLN3-218ENST00000565688 RIMS1Q86UR5 1692 aaKnown RBP30.4■■■□□ 2.46
CLN3-218ENST00000565688 ATP10AO60312 1499 aa30.4■■■□□ 2.46
CLN3-218ENST00000565688 SIGLEC1Q9BZZ2 1709 aa30.38■■■□□ 2.45
CLN3-218ENST00000565688 C9orf84Q5VXU9 1444 aa30.37■■■□□ 2.45
CLN3-218ENST00000565688 KDM5CP41229 1560 aa30.35■■■□□ 2.45
CLN3-218ENST00000565688 CDC42BPBQ9Y5S2 1711 aa30.35■■■□□ 2.45
CLN3-218ENST00000565688 PREX2Q70Z35 1606 aa30.34■■■□□ 2.45
CLN3-218ENST00000565688 ILDR1Q86SU0 546 aaPredicted RBP30.34■■■□□ 2.45
CLN3-218ENST00000565688 AFAP1Q8N556 730 aa30.34■■■□□ 2.45
CLN3-218ENST00000565688 MLECQ14165 292 aa30.32■■■□□ 2.44
CLN3-218ENST00000565688 LMTK3Q96Q04 1460 aa30.3■■■□□ 2.44
CLN3-218ENST00000565688 MYT1LQ9UL68 1186 aa30.27■■■□□ 2.44
CLN3-218ENST00000565688 FER1L4A9Z1Z3 1794 aa30.27■■■□□ 2.44
CLN3-218ENST00000565688 ABCC1P33527 1531 aa30.27■■■□□ 2.44
CLN3-218ENST00000565688 ARHGEF12Q9NZN5 1544 aa30.27■■■□□ 2.44
CLN3-218ENST00000565688 MLH3Q9UHC1 1453 aa30.25■■■□□ 2.43
CLN3-218ENST00000565688 CDC42BPAQ5VT25 1732 aa30.23■■■□□ 2.43
CLN3-218ENST00000565688 PLPPR3Q6T4P5 718 aa30.22■■■□□ 2.43
CLN3-218ENST00000565688 REREQ9P2R6 1566 aa30.21■■■□□ 2.43
CLN3-218ENST00000565688 DIP2CQ9Y2E4 1556 aa30.21■■■□□ 2.43
CLN3-218ENST00000565688 TRAPPC8Q9Y2L5 1435 aa30.21■■■□□ 2.43
CLN3-218ENST00000565688 ITSN2Q9NZM3 1697 aa30.2■■■□□ 2.43
CLN3-218ENST00000565688 GPATCH8Q9UKJ3 1502 aaKnown RBP30.17■■■□□ 2.42
CLN3-218ENST00000565688 ABCA6Q8N139 1617 aa30.16■■■□□ 2.42
CLN3-218ENST00000565688 ZNF777Q9ULD5 760 aaPredicted RBP30.13■■■□□ 2.41
CLN3-218ENST00000565688 MTUS2Q5JR59 1369 aa30.12■■■□□ 2.41
CLN3-218ENST00000565688 AGLP35573 1532 aa30.11■■■□□ 2.41
CLN3-218ENST00000565688 CCNB3Q8WWL7 1395 aa30.1■■■□□ 2.41
CLN3-218ENST00000565688 SAMD9LQ8IVG5 1584 aa30.1■■■□□ 2.41
CLN3-218ENST00000565688 HSPA2P54652 639 aa30.09■■■□□ 2.41
CLN3-218ENST00000565688 CEP162Q5TB80 1403 aa30.09■■■□□ 2.41
CLN3-218ENST00000565688 KIDINS220Q9ULH0 1771 aa30.08■■■□□ 2.41
CLN3-218ENST00000565688 PLEKHH2Q8IVE3 1493 aa30.08■■■□□ 2.41
CLN3-218ENST00000565688 CFDP1Q9UEE9 299 aaPredicted RBP30.08■■■□□ 2.41
CLN3-218ENST00000565688 KIAA1107Q9UPP5 1409 aa30.07■■■□□ 2.4
CLN3-218ENST00000565688 SYCP2Q9BX26 1530 aa30.06■■■□□ 2.4
CLN3-218ENST00000565688 CEBPAP49715 358 aaPredicted RBP30.04■■■□□ 2.4
CLN3-218ENST00000565688 SPAG9O60271 1321 aaKnown RBP30.03■■■□□ 2.4
CLN3-218ENST00000565688 HNRNPMP52272 730 aaKnown RBP eCLIP30.03■■■□□ 2.4
CLN3-218ENST00000565688 ESF1Q9H501 851 aaKnown RBP30.03■■■□□ 2.4
CLN3-218ENST00000565688 PREX1Q8TCU6 1659 aa30.03■■■□□ 2.4
CLN3-218ENST00000565688 EHBP1L1Q8N3D4 1523 aa30.01■■■□□ 2.4
CLN3-218ENST00000565688 FBXO41Q8TF61 875 aa29.99■■■□□ 2.39
CLN3-218ENST00000565688 CNTLNQ9NXG0 1405 aa29.96■■■□□ 2.39
CLN3-218ENST00000565688 ATP7AQ04656 1500 aa29.95■■■□□ 2.38
CLN3-218ENST00000565688 UHRF1BP1Q6BDS2 1440 aa29.95■■■□□ 2.38
CLN3-218ENST00000565688 TIAM1Q13009 1591 aa29.94■■■□□ 2.38
CLN3-218ENST00000565688 SETD1BQ9UPS6 1966 aaKnown RBP29.94■■■□□ 2.38
CLN3-218ENST00000565688 C3P01024 1663 aa29.92■■■□□ 2.38
CLN3-218ENST00000565688 INO80Q9ULG1 1556 aaPredicted RBP29.92■■■□□ 2.38
CLN3-218ENST00000565688 A2MP01023 1474 aa29.87■■■□□ 2.37
CLN3-218ENST00000565688 ZNF644Q9H582 1327 aaPredicted RBP29.86■■■□□ 2.37
CLN3-218ENST00000565688 PLXNC1O60486 1568 aa29.86■■■□□ 2.37
CLN3-218ENST00000565688 SUPT6HQ7KZ85 1726 aaKnown RBP29.85■■■□□ 2.37
CLN3-218ENST00000565688 DMRT2Q9Y5R5 561 aa29.84■■■□□ 2.37
CLN3-218ENST00000565688 MBD5Q9P267 1494 aa29.84■■■□□ 2.37
CLN3-218ENST00000565688 MROH2AA6NES4 1674 aa29.82■■■□□ 2.36
CLN3-218ENST00000565688 NCOA2Q15596 1464 aa29.81■■■□□ 2.36
CLN3-218ENST00000565688 RTEL1-TNFRSF6BF6WH68 1400 aa29.79■■■□□ 2.36
CLN3-218ENST00000565688 NPATQ14207 1427 aa29.79■■■□□ 2.36
CLN3-218ENST00000565688 ADGBQ8N7X0 1667 aa29.79■■■□□ 2.36
CLN3-218ENST00000565688 VPS8Q8N3P4 1428 aa29.79■■■□□ 2.36
CLN3-218ENST00000565688 ZMYM3Q14202 1370 aa29.78■■■□□ 2.36
CLN3-218ENST00000565688 LOC105371045A0A1W2PR82 267 aa29.78■■■□□ 2.36
CLN3-218ENST00000565688 PPP6R1Q9UPN7 881 aa29.76■■■□□ 2.35
CLN3-218ENST00000565688 STRCQ7RTU9 1775 aa29.76■■■□□ 2.35
CLN3-218ENST00000565688 RSPH4AQ5TD94 716 aa29.75■■■□□ 2.35
CLN3-218ENST00000565688 CERKQ8TCT0 537 aa29.74■■■□□ 2.35
CLN3-218ENST00000565688 GGT6Q6P531 493 aa29.73■■■□□ 2.35
CLN3-218ENST00000565688 CAMSAP2Q08AD1 1489 aa29.73■■■□□ 2.35
CLN3-218ENST00000565688 CCDC141Q6ZP82 1450 aa29.73■■■□□ 2.35
CLN3-218ENST00000565688 CLTCQ00610 1675 aaKnown RBP29.71■■■□□ 2.35
CLN3-218ENST00000565688 LRRC9Q6ZRR7 1453 aa29.7■■■□□ 2.35
CLN3-218ENST00000565688 DHX29Q7Z478 1369 aaKnown RBP29.7■■■□□ 2.35
CLN3-218ENST00000565688 PTPRTO14522 1441 aa29.68■■■□□ 2.34
CLN3-218ENST00000565688 MAP3K1Q13233 1512 aa29.66■■■□□ 2.34
CLN3-218ENST00000565688 ARHGEF5Q12774 1597 aa29.64■■■□□ 2.33
CLN3-218ENST00000565688 PTPRKQ15262 1439 aa29.63■■■□□ 2.33
CLN3-218ENST00000565688 NCOA1Q15788 1441 aa29.63■■■□□ 2.33
CLN3-218ENST00000565688 TSPY4P0CV99 314 aa29.61■■■□□ 2.33
CLN3-218ENST00000565688 TSPY10P0CW01 314 aa29.61■■■□□ 2.33
CLN3-218ENST00000565688 KIF3BO15066 747 aa29.58■■■□□ 2.33
CLN3-218ENST00000565688 CAMSAP1Q5T5Y3 1602 aa29.58■■■□□ 2.33
CLN3-218ENST00000565688 MYO3AQ8NEV4 1616 aa29.57■■■□□ 2.32
CLN3-218ENST00000565688 FAM135AQ9P2D6 1515 aa29.56■■■□□ 2.32
CLN3-218ENST00000565688 KANK4Q5T7N3 995 aaPredicted RBP29.56■■■□□ 2.32
CLN3-218ENST00000565688 ZNF142P52746 1687 aaPredicted RBP29.56■■■□□ 2.32
CLN3-218ENST00000565688 CEP170BQ9Y4F5 1589 aaPredicted RBP29.53■■■□□ 2.32
CLN3-218ENST00000565688 MIA2Q96PC5 1412 aa29.53■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms