RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 RAB3GAP2Q9H2M9 1393 aa10.61□□□□□ -0.71
HERPUD1-209ENST00000564678 ITGAEP38570 1179 aa10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 FAM50AQ14320 339 aaKnown RBP10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 EIF4G3O43432 1585 aaKnown RBP10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 EHBP1L1Q8N3D4 1523 aa10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 FGD6Q6ZV73 1430 aa10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 GRIN2AQ12879 1464 aa10.6□□□□□ -0.71
HERPUD1-209ENST00000564678 LRRIQ1Q96JM4 1722 aa10.59□□□□□ -0.71
HERPUD1-209ENST00000564678 HECW1Q76N89 1606 aa10.59□□□□□ -0.71
HERPUD1-209ENST00000564678 SUPT6HQ7KZ85 1726 aaKnown RBP10.59□□□□□ -0.71
HERPUD1-209ENST00000564678 NCOA2Q15596 1464 aa10.58□□□□□ -0.72
HERPUD1-209ENST00000564678 MYOM3Q5VTT5 1437 aa10.57□□□□□ -0.72
HERPUD1-209ENST00000564678 ARHGEF11O15085 1522 aa10.57□□□□□ -0.72
HERPUD1-209ENST00000564678 SYNJ2O15056 1496 aa10.57□□□□□ -0.72
HERPUD1-209ENST00000564678 EPRSP07814 1512 aaKnown RBP10.56□□□□□ -0.72
HERPUD1-209ENST00000564678 ECM2O94769 699 aaPredicted RBP10.55□□□□□ -0.72
HERPUD1-209ENST00000564678 CHMP7Q8WUX9 453 aaPredicted RBP10.55□□□□□ -0.72
HERPUD1-209ENST00000564678 DISP1Q96F81 1524 aa10.55□□□□□ -0.72
HERPUD1-209ENST00000564678 KIAA0556O60303 1618 aa10.54□□□□□ -0.72
HERPUD1-209ENST00000564678 RGL2O15211 777 aa10.54□□□□□ -0.72
HERPUD1-209ENST00000564678 SPDYE4A6NLX3 237 aa10.53□□□□□ -0.72
HERPUD1-209ENST00000564678 MIA2Q96PC5 1412 aa10.52□□□□□ -0.73
HERPUD1-209ENST00000564678 MAPKBP1O60336 1514 aa10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 MAGI3Q5TCQ9 1506 aa10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 HFM1A2PYH4 1435 aa10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 NUP160Q12769 1436 aa10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 PROM2Q8N271 834 aa10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 TCOF1Q13428 1488 aaKnown RBP10.51□□□□□ -0.73
HERPUD1-209ENST00000564678 CDK11AQ9UQ88 783 aaPredicted RBP10.5□□□□□ -0.73
HERPUD1-209ENST00000564678 PTPN23Q9H3S7 1636 aa10.5□□□□□ -0.73
HERPUD1-209ENST00000564678 CARMIL2Q6F5E8 1435 aa10.5□□□□□ -0.73
HERPUD1-209ENST00000564678 CEP170Q5SW79 1584 aa10.49□□□□□ -0.73
HERPUD1-209ENST00000564678 ACIN1Q9UKV3 1341 aaKnown RBP10.49□□□□□ -0.73
HERPUD1-209ENST00000564678 RAPGEF6Q8TEU7 1601 aa10.48□□□□□ -0.73
HERPUD1-209ENST00000564678 POTEHQ6S545 545 aa10.48□□□□□ -0.73
HERPUD1-209ENST00000564678 JPH4Q96JJ6 628 aa10.48□□□□□ -0.73
HERPUD1-209ENST00000564678 PTPRKQ15262 1439 aa10.47□□□□□ -0.73
HERPUD1-209ENST00000564678 CDK13Q14004 1512 aaKnown RBP10.47□□□□□ -0.73
HERPUD1-209ENST00000564678 NUP153P49790 1475 aaKnown RBP10.47□□□□□ -0.73
HERPUD1-209ENST00000564678 NAIPQ13075 1403 aa10.46□□□□□ -0.73
HERPUD1-209ENST00000564678 AKNAQ7Z591 1439 aa10.46□□□□□ -0.73
HERPUD1-209ENST00000564678 UACAQ9BZF9 1416 aa10.46□□□□□ -0.73
HERPUD1-209ENST00000564678 HOXD11P31277 338 aaPredicted RBP10.46□□□□□ -0.74
HERPUD1-209ENST00000564678 TROQ12816 1431 aaPredicted RBP10.42□□□□□ -0.74
HERPUD1-209ENST00000564678 CENPBP07199 599 aaPredicted RBP10.42□□□□□ -0.74
HERPUD1-209ENST00000564678 TRHP20396 242 aaPredicted RBP10.42□□□□□ -0.74
HERPUD1-209ENST00000564678 SIN3AQ96ST3 1273 aa10.41□□□□□ -0.74
HERPUD1-209ENST00000564678 ROCK1Q13464 1354 aa10.4□□□□□ -0.74
HERPUD1-209ENST00000564678 GCC2Q8IWJ2 1684 aa10.4□□□□□ -0.74
HERPUD1-209ENST00000564678 CHGAP10645 457 aaKnown RBP10.4□□□□□ -0.74
HERPUD1-209ENST00000564678 PLB1Q6P1J6 1458 aa10.4□□□□□ -0.74
HERPUD1-209ENST00000564678 PPP1R15AO75807 674 aaPredicted RBP10.39□□□□□ -0.75
HERPUD1-209ENST00000564678 BRPF1P55201 1214 aaPredicted RBP10.39□□□□□ -0.75
HERPUD1-209ENST00000564678 NEUROD1Q13562 356 aa10.39□□□□□ -0.75
HERPUD1-209ENST00000564678 MIER1Q8N108 512 aa10.39□□□□□ -0.75
HERPUD1-209ENST00000564678 ABCA8O94911 1581 aa10.38□□□□□ -0.75
HERPUD1-209ENST00000564678 ARID3CA6NKF2 412 aa10.38□□□□□ -0.75
HERPUD1-209ENST00000564678 ADCY10Q96PN6 1610 aa10.38□□□□□ -0.75
HERPUD1-209ENST00000564678 PLEKHD1A6NEE1 506 aa10.37□□□□□ -0.75
HERPUD1-209ENST00000564678 DAPK1P53355 1430 aa10.37□□□□□ -0.75
HERPUD1-209ENST00000564678 DNMT1P26358 1616 aaKnown RBP10.37□□□□□ -0.75
HERPUD1-209ENST00000564678 ITSN2Q9NZM3 1697 aa10.37□□□□□ -0.75
HERPUD1-209ENST00000564678 PRG4Q92954 1404 aaPredicted RBP10.36□□□□□ -0.75
HERPUD1-209ENST00000564678 RRP7BPQ9NSQ0 103 aa10.36□□□□□ -0.75
HERPUD1-209ENST00000564678 CHIC2Q9UKJ5 165 aa10.36□□□□□ -0.75
HERPUD1-209ENST00000564678 ABCC5O15440 1437 aa10.35□□□□□ -0.75
HERPUD1-209ENST00000564678 CFDP1Q9UEE9 299 aaPredicted RBP10.35□□□□□ -0.75
HERPUD1-209ENST00000564678 GPATCH8Q9UKJ3 1502 aaKnown RBP10.35□□□□□ -0.75
HERPUD1-209ENST00000564678 TONSLQ96HA7 1378 aa10.35□□□□□ -0.75
HERPUD1-209ENST00000564678 PTPRGP23470 1445 aa10.34□□□□□ -0.75
HERPUD1-209ENST00000564678 ATP10BO94823 1461 aa10.34□□□□□ -0.75
HERPUD1-209ENST00000564678 SPOCK2Q92563 424 aa10.32□□□□□ -0.76
HERPUD1-209ENST00000564678 TRIM52Q96A61 297 aa10.32□□□□□ -0.76
HERPUD1-209ENST00000564678 CHD1O14646 1710 aa10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 SHROOM2Q13796 1616 aa10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 CAMSAP2Q08AD1 1489 aa10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 ZNF644Q9H582 1327 aaPredicted RBP10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 MKRN4PQ13434 485 aaPredicted RBP10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 MPHOSPH9Q99550 1183 aa10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 KIF14Q15058 1648 aa10.31□□□□□ -0.76
HERPUD1-209ENST00000564678 ADGRL2O95490 1459 aa10.3□□□□□ -0.76
HERPUD1-209ENST00000564678 ABCC10Q5T3U5 1492 aa10.3□□□□□ -0.76
HERPUD1-209ENST00000564678 NCOA1Q15788 1441 aa10.3□□□□□ -0.76
HERPUD1-209ENST00000564678 DENND4BO75064 1496 aaPredicted RBP10.29□□□□□ -0.76
HERPUD1-209ENST00000564678 KDM6BO15054 1643 aa10.29□□□□□ -0.76
HERPUD1-209ENST00000564678 ANKRD30AQ9BXX3 1397 aa10.27□□□□□ -0.76
HERPUD1-209ENST00000564678 CDC42BPAQ5VT25 1732 aa10.27□□□□□ -0.76
HERPUD1-209ENST00000564678 ADGBQ8N7X0 1667 aa10.27□□□□□ -0.77
HERPUD1-209ENST00000564678 RSPH4AQ5TD94 716 aa10.27□□□□□ -0.77
HERPUD1-209ENST00000564678 SHANK2Q9UPX8 1470 aa10.26□□□□□ -0.77
HERPUD1-209ENST00000564678 CROCC2H7BZ55 1655 aa10.26□□□□□ -0.77
HERPUD1-209ENST00000564678 ZNF777Q9ULD5 760 aaPredicted RBP10.25□□□□□ -0.77
HERPUD1-209ENST00000564678 ANKRD30BQ9BXX2 1392 aa10.25□□□□□ -0.77
HERPUD1-209ENST00000564678 KDM5BQ9UGL1 1544 aa10.24□□□□□ -0.77
HERPUD1-209ENST00000564678 TSPY4P0CV99 314 aa10.24□□□□□ -0.77
HERPUD1-209ENST00000564678 TSPY10P0CW01 314 aa10.24□□□□□ -0.77
HERPUD1-209ENST00000564678 ARHGEF5Q12774 1597 aa10.23□□□□□ -0.77
HERPUD1-209ENST00000564678 ZNF219Q9P2Y4 722 aaPredicted RBP10.23□□□□□ -0.77
HERPUD1-209ENST00000564678 RPRD2Q5VT52 1461 aaKnown RBP10.23□□□□□ -0.77
HERPUD1-209ENST00000564678 ABCC2Q92887 1545 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms