RNA–Protein interactions for RNA: ENST00000563448.1

SMG1-208, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 2

Gene SMG1, Length 2,016 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-208ENST00000563448 CFDP1Q9UEE9 299 aaPredicted RBP15.42■□□□□ 0.06
SMG1-208ENST00000563448 SAMD9LQ8IVG5 1584 aa15.42■□□□□ 0.06
SMG1-208ENST00000563448 DNMT1P26358 1616 aaKnown RBP15.41■□□□□ 0.06
SMG1-208ENST00000563448 ARHGAP5Q13017 1502 aa15.4■□□□□ 0.06
SMG1-208ENST00000563448 PLCH2O75038 1416 aa15.4■□□□□ 0.06
SMG1-208ENST00000563448 ZNF644Q9H582 1327 aaPredicted RBP15.4■□□□□ 0.06
SMG1-208ENST00000563448 ITGAEP38570 1179 aa15.39■□□□□ 0.05
SMG1-208ENST00000563448 CROCC2H7BZ55 1655 aa15.39■□□□□ 0.05
SMG1-208ENST00000563448 ARAP3Q8WWN8 1544 aa15.39■□□□□ 0.05
SMG1-208ENST00000563448 KIF13AQ9H1H9 1805 aa15.38■□□□□ 0.05
SMG1-208ENST00000563448 GLI2P10070 1586 aa15.38■□□□□ 0.05
SMG1-208ENST00000563448 DIP2BQ9P265 1576 aa15.38■□□□□ 0.05
SMG1-208ENST00000563448 ZNF777Q9ULD5 760 aaPredicted RBP15.38■□□□□ 0.05
SMG1-208ENST00000563448 MAP3K4Q9Y6R4 1608 aa15.37■□□□□ 0.05
SMG1-208ENST00000563448 PTPRKQ15262 1439 aa15.37■□□□□ 0.05
SMG1-208ENST00000563448 ARHGEF5Q12774 1597 aa15.34■□□□□ 0.05
SMG1-208ENST00000563448 ADGBQ8N7X0 1667 aa15.34■□□□□ 0.05
SMG1-208ENST00000563448 DAPK1P53355 1430 aa15.34■□□□□ 0.05
SMG1-208ENST00000563448 TSPOAP1O95153 1857 aa15.33■□□□□ 0.04
SMG1-208ENST00000563448 ABCC5O15440 1437 aa15.33■□□□□ 0.04
SMG1-208ENST00000563448 SYCP2Q9BX26 1530 aa15.32■□□□□ 0.04
SMG1-208ENST00000563448 CD109Q6YHK3 1445 aa15.32■□□□□ 0.04
SMG1-208ENST00000563448 ABCC1P33527 1531 aa15.32■□□□□ 0.04
SMG1-208ENST00000563448 CFAP74Q9C0B2 1584 aa15.32■□□□□ 0.04
SMG1-208ENST00000563448 MBD5Q9P267 1494 aa15.32■□□□□ 0.04
SMG1-208ENST00000563448 FANCAO15360 1455 aa15.31■□□□□ 0.04
SMG1-208ENST00000563448 EFCAB2Q5VUJ9 269 aa15.31■□□□□ 0.04
SMG1-208ENST00000563448 PLEKHH2Q8IVE3 1493 aa15.3■□□□□ 0.04
SMG1-208ENST00000563448 PPRC1Q5VV67 1664 aaKnown RBP15.3■□□□□ 0.04
SMG1-208ENST00000563448 GCC2Q8IWJ2 1684 aa15.3■□□□□ 0.04
SMG1-208ENST00000563448 ARHGEF12Q9NZN5 1544 aa15.3■□□□□ 0.04
SMG1-208ENST00000563448 HNRNPMP52272 730 aaKnown RBP eCLIP15.29■□□□□ 0.04
SMG1-208ENST00000563448 KIAA1107Q9UPP5 1409 aa15.28■□□□□ 0.04
SMG1-208ENST00000563448 FAM69CQ0P6D2 419 aa15.27■□□□□ 0.04
SMG1-208ENST00000563448 AKNAQ7Z591 1439 aa15.27■□□□□ 0.03
SMG1-208ENST00000563448 CCDC141Q6ZP82 1450 aa15.27■□□□□ 0.03
SMG1-208ENST00000563448 CHIC2Q9UKJ5 165 aa15.26■□□□□ 0.03
SMG1-208ENST00000563448 SHANK2Q9UPX8 1470 aa15.26■□□□□ 0.03
SMG1-208ENST00000563448 MAST1Q9Y2H9 1570 aa15.26■□□□□ 0.03
SMG1-208ENST00000563448 SETD5Q9C0A6 1442 aa15.25■□□□□ 0.03
SMG1-208ENST00000563448 HFM1A2PYH4 1435 aa15.24■□□□□ 0.03
SMG1-208ENST00000563448 ADGRL1O94910 1474 aa15.24■□□□□ 0.03
SMG1-208ENST00000563448 ADGRL2O95490 1459 aa15.24■□□□□ 0.03
SMG1-208ENST00000563448 ROCK1Q13464 1354 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 RSPH4AQ5TD94 716 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 NEO1Q92859 1461 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 NAIPQ13075 1403 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 C9orf84Q5VXU9 1444 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 TRAPPC8Q9Y2L5 1435 aa15.23■□□□□ 0.03
SMG1-208ENST00000563448 KDM6BO15054 1643 aa15.22■□□□□ 0.03
SMG1-208ENST00000563448 RAB3GAP2Q9H2M9 1393 aa15.21■□□□□ 0.03
SMG1-208ENST00000563448 RRP7BPQ9NSQ0 103 aa15.21■□□□□ 0.03
SMG1-208ENST00000563448 SCAPERQ9BY12 1400 aa15.21■□□□□ 0.03
SMG1-208ENST00000563448 NCOA1Q15788 1441 aa15.2■□□□□ 0.02
SMG1-208ENST00000563448 TSPY4P0CV99 314 aa15.2■□□□□ 0.02
SMG1-208ENST00000563448 TSPY10P0CW01 314 aa15.2■□□□□ 0.02
SMG1-208ENST00000563448 RICTORQ6R327 1708 aa15.19■□□□□ 0.02
SMG1-208ENST00000563448 PLXNC1O60486 1568 aa15.19■□□□□ 0.02
SMG1-208ENST00000563448 INO80Q9ULG1 1556 aaPredicted RBP15.18■□□□□ 0.02
SMG1-208ENST00000563448 ANKRD30AQ9BXX3 1397 aa15.17■□□□□ 0.02
SMG1-208ENST00000563448 TEX14Q8IWB6 1497 aa15.17■□□□□ 0.02
SMG1-208ENST00000563448 KIDINS220Q9ULH0 1771 aa15.16■□□□□ 0.02
SMG1-208ENST00000563448 AFAP1Q8N556 730 aa15.16■□□□□ 0.02
SMG1-208ENST00000563448 ZFYVE16Q7Z3T8 1539 aa15.16■□□□□ 0.02
SMG1-208ENST00000563448 KDM5CP41229 1560 aa15.16■□□□□ 0.02
SMG1-208ENST00000563448 HRCP23327 699 aa15.15■□□□□ 0.02
SMG1-208ENST00000563448 POGZQ7Z3K3 1410 aa15.15■□□□□ 0.02
SMG1-208ENST00000563448 ZNF518AQ6AHZ1 1483 aa15.15■□□□□ 0.02
SMG1-208ENST00000563448 ATP7AQ04656 1500 aa15.14■□□□□ 0.02
SMG1-208ENST00000563448 RTEL1-TNFRSF6BF6WH68 1400 aa15.14■□□□□ 0.01
SMG1-208ENST00000563448 FRMPD1Q5SYB0 1578 aa15.13■□□□□ 0.01
SMG1-208ENST00000563448 DENND4BO75064 1496 aaPredicted RBP15.13■□□□□ 0.01
SMG1-208ENST00000563448 HECW2Q9P2P5 1572 aa15.12■□□□□ 0.01
SMG1-208ENST00000563448 SPAG9O60271 1321 aaKnown RBP15.12■□□□□ 0.01
SMG1-208ENST00000563448 KIF15Q9NS87 1388 aa15.12■□□□□ 0.01
SMG1-208ENST00000563448 DHX57Q6P158 1386 aaKnown RBP15.1■□□□□ 0.01
SMG1-208ENST00000563448 DUOX2Q9NRD8 1548 aa15.1■□□□□ 0.01
SMG1-208ENST00000563448 CCER1Q8TC90 406 aaPredicted RBP15.09■□□□□ 0.01
SMG1-208ENST00000563448 ANKRD50Q9ULJ7 1429 aa15.09■□□□□ 0.01
SMG1-208ENST00000563448 MLH3Q9UHC1 1453 aa15.09■□□□□ 0.01
SMG1-208ENST00000563448 ABCA6Q8N139 1617 aa15.08■□□□□ 0
SMG1-208ENST00000563448 RAPGEF3O95398 923 aa15.08■□□□□ 0
SMG1-208ENST00000563448 TRHP20396 242 aaPredicted RBP15.07■□□□□ 0
SMG1-208ENST00000563448 ZMYM4Q5VZL5 1548 aa15.07■□□□□ 0
SMG1-208ENST00000563448 COL17A1Q9UMD9 1497 aaPredicted RBP15.05■□□□□ -0
SMG1-208ENST00000563448 UNC13BO14795 1591 aa15.05■□□□□ -0
SMG1-208ENST00000563448 MYT1LQ9UL68 1186 aa15.04■□□□□ -0
SMG1-208ENST00000563448 ERBINQ96RT1 1412 aa15.04■□□□□ -0
SMG1-208ENST00000563448 DIP2CQ9Y2E4 1556 aa15.04■□□□□ -0
SMG1-208ENST00000563448 EIF2AK4Q9P2K8 1649 aaKnown RBP15.04■□□□□ -0
SMG1-208ENST00000563448 TRIM52Q96A61 297 aa15.02■□□□□ -0
SMG1-208ENST00000563448 ACIN1Q9UKV3 1341 aaKnown RBP15.02□□□□□ -0.01
SMG1-208ENST00000563448 KDM5DQ9BY66 1539 aa15.01□□□□□ -0.01
SMG1-208ENST00000563448 DEPDC5O75140 1603 aa15.01□□□□□ -0.01
SMG1-208ENST00000563448 BCORL1Q5H9F3 1711 aa15.01□□□□□ -0.01
SMG1-208ENST00000563448 A2MP01023 1474 aa15□□□□□ -0.01
SMG1-208ENST00000563448 PZPP20742 1482 aa15□□□□□ -0.01
SMG1-208ENST00000563448 DHX29Q7Z478 1369 aaKnown RBP15□□□□□ -0.01
SMG1-208ENST00000563448 YEATS2Q9ULM3 1422 aa15□□□□□ -0.01
SMG1-208ENST00000563448 MAGI2Q86UL8 1455 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms