RNA–Protein interactions for RNA: ENST00000561330.1

USP8-218, Transcript of ubiquitin specific peptidase 8, humanhuman

TSL 1 (best)

Gene USP8, Length 815 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP8-218ENST00000561330 SCUBE2Q9NQ36 999 aa12.06□□□□□ -0.48
USP8-218ENST00000561330 PDE4AP27815 886 aa12.04□□□□□ -0.48
USP8-218ENST00000561330 VSIG10Q8N0Z9 540 aa12.04□□□□□ -0.48
USP8-218ENST00000561330 TMC2Q8TDI7 906 aa12.04□□□□□ -0.48
USP8-218ENST00000561330 CRISPLD2Q9H0B8 497 aa12.02□□□□□ -0.49
USP8-218ENST00000561330 GPHNQ9NQX3 736 aaPredicted RBP12.01□□□□□ -0.49
USP8-218ENST00000561330 NCKAP5LQ9HCH0 1330 aa12.01□□□□□ -0.49
USP8-218ENST00000561330 TMEM92Q6UXU6 159 aa11.99□□□□□ -0.49
USP8-218ENST00000561330 LARP6Q9BRS8 491 aaKnown RBP11.99□□□□□ -0.49
USP8-218ENST00000561330 C2orf72A6NCS6 295 aa11.98□□□□□ -0.49
USP8-218ENST00000561330 WDR70Q9NW82 654 aa11.98□□□□□ -0.49
USP8-218ENST00000561330 KDM2AQ9Y2K7 1162 aa11.98□□□□□ -0.49
USP8-218ENST00000561330 KIF3CO14782 793 aa11.96□□□□□ -0.49
USP8-218ENST00000561330 SLAIN1Q8ND83 568 aa11.96□□□□□ -0.49
USP8-218ENST00000561330 OTUD5Q96G74 571 aa11.95□□□□□ -0.5
USP8-218ENST00000561330 DDX27Q96GQ7 796 aaKnown RBP11.95□□□□□ -0.5
USP8-218ENST00000561330 MFSD10Q14728 455 aa11.94□□□□□ -0.5
USP8-218ENST00000561330 FOXK1P85037 733 aa11.92□□□□□ -0.5
USP8-218ENST00000561330 PPP1R15BQ5SWA1 713 aa11.92□□□□□ -0.5
USP8-218ENST00000561330 DSG2Q14126 1118 aa11.91□□□□□ -0.5
USP8-218ENST00000561330 PLPP6Q8IY26 295 aa11.89□□□□□ -0.51
USP8-218ENST00000561330 E2F4Q16254 413 aa11.85□□□□□ -0.51
USP8-218ENST00000561330 CAMK2BQ13554 666 aa11.8□□□□□ -0.52
USP8-218ENST00000561330 SNPHO15079 494 aa11.79□□□□□ -0.52
USP8-218ENST00000561330 P3H3Q8IVL6 736 aa11.79□□□□□ -0.52
USP8-218ENST00000561330 DOK7Q18PE1 504 aa11.78□□□□□ -0.52
USP8-218ENST00000561330 SLC34A2O95436 690 aa11.76□□□□□ -0.53
USP8-218ENST00000561330 HOXB3P14651 431 aaPredicted RBP11.75□□□□□ -0.53
USP8-218ENST00000561330 KCNV2Q8TDN2 545 aa11.75□□□□□ -0.53
USP8-218ENST00000561330 EMILIN3Q9NT22 766 aa11.75□□□□□ -0.53
USP8-218ENST00000561330 RIMBP2O15034 1052 aa11.74□□□□□ -0.53
USP8-218ENST00000561330 OXER1Q8TDS5 423 aa11.73□□□□□ -0.53
USP8-218ENST00000561330 UPF1Q92900 1129 aaKnown RBP eCLIP11.73□□□□□ -0.53
USP8-218ENST00000561330 ZNF710Q8N1W2 664 aa11.72□□□□□ -0.53
USP8-218ENST00000561330 PTCD2Q8WV60 388 aaKnown RBP11.72□□□□□ -0.53
USP8-218ENST00000561330 TBC1D12O60347 775 aa11.71□□□□□ -0.53
USP8-218ENST00000561330 ARHGEF1Q92888 912 aaKnown RBP11.71□□□□□ -0.53
USP8-218ENST00000561330 MAP3K9P80192 1104 aa11.7□□□□□ -0.54
USP8-218ENST00000561330 ARIH1Q9Y4X5 557 aaPredicted RBP11.7□□□□□ -0.54
USP8-218ENST00000561330 DPYSL4O14531 572 aa11.69□□□□□ -0.54
USP8-218ENST00000561330 ZSWIM6Q9HCJ5 1215 aa11.69□□□□□ -0.54
USP8-218ENST00000561330 PCDHGA4Q9Y5G9 962 aa11.69□□□□□ -0.54
USP8-218ENST00000561330 ARSIQ5FYB1 569 aa11.64□□□□□ -0.55
USP8-218ENST00000561330 ZNF316A6NFI3 1004 aaPredicted RBP11.63□□□□□ -0.55
USP8-218ENST00000561330 GPR153Q6NV75 609 aa11.63□□□□□ -0.55
USP8-218ENST00000561330 SPDYE16A6NNV3 312 aaPredicted RBP11.62□□□□□ -0.55
USP8-218ENST00000561330 FAM163AQ96GL9 167 aaPredicted RBP11.62□□□□□ -0.55
USP8-218ENST00000561330 EVI5O60447 810 aa11.6□□□□□ -0.55
USP8-218ENST00000561330 HOXB1P14653 301 aaPredicted RBP11.6□□□□□ -0.55
USP8-218ENST00000561330 NBR1Q14596 966 aa11.6□□□□□ -0.55
USP8-218ENST00000561330 PDIA6Q15084 440 aa11.6□□□□□ -0.55
USP8-218ENST00000561330 KHSRPQ92945 711 aaKnown RBP eCLIP11.6□□□□□ -0.559e-7■■■□□ 15.8
USP8-218ENST00000561330 PLSCR2Q9NRY7 297 aa11.6□□□□□ -0.55
USP8-218ENST00000561330 ST18O60284 1047 aa11.59□□□□□ -0.55
USP8-218ENST00000561330 NUDT7P0C024 238 aa11.58□□□□□ -0.56
USP8-218ENST00000561330 KDM4FA0A1W2PPD8 638 aa11.55□□□□□ -0.56
USP8-218ENST00000561330 BCANQ96GW7 911 aa11.55□□□□□ -0.56
USP8-218ENST00000561330 ANO8Q9HCE9 1232 aaPredicted RBP11.55□□□□□ -0.56
USP8-218ENST00000561330 SEMA3EO15041 775 aa11.53□□□□□ -0.56
USP8-218ENST00000561330 POTEMA6NI47 508 aa11.51□□□□□ -0.57
USP8-218ENST00000561330 MARVELD3Q96A59 401 aa11.5□□□□□ -0.57
USP8-218ENST00000561330 TESPA1A2RU30 521 aaPredicted RBP11.49□□□□□ -0.57
USP8-218ENST00000561330 PTGER2P43116 358 aa11.49□□□□□ -0.57
USP8-218ENST00000561330 EMP3P54852 163 aa11.49□□□□□ -0.57
USP8-218ENST00000561330 DDX12PQ92771 950 aa11.49□□□□□ -0.57
USP8-218ENST00000561330 LHX6Q9UPM6 363 aa11.49□□□□□ -0.57
USP8-218ENST00000561330 LCE2DQ5TA82 110 aaPredicted RBP11.48□□□□□ -0.57
USP8-218ENST00000561330 POTEGQ6S5H5 508 aa11.48□□□□□ -0.57
USP8-218ENST00000561330 GRXCR2A6NFK2 248 aa11.47□□□□□ -0.57
USP8-218ENST00000561330 ERBB3P21860 1342 aa11.46□□□□□ -0.57
USP8-218ENST00000561330 PSDA5PKW4 1024 aaPredicted RBP11.46□□□□□ -0.57
USP8-218ENST00000561330 MLLT3P42568 568 aaPredicted RBP11.46□□□□□ -0.57
USP8-218ENST00000561330 SMYD5Q6GMV2 418 aa11.46□□□□□ -0.57
USP8-218ENST00000561330 TULP1O00294 542 aaPredicted RBP11.45□□□□□ -0.58
USP8-218ENST00000561330 JPH4Q96JJ6 628 aa11.45□□□□□ -0.58
USP8-218ENST00000561330 PHF14O94880 888 aa11.44□□□□□ -0.58
USP8-218ENST00000561330 FOSBP53539 338 aa11.44□□□□□ -0.58
USP8-218ENST00000561330 ZNF454Q8N9F8 522 aa11.44□□□□□ -0.58
USP8-218ENST00000561330 FAM205CA6NFA0 338 aa11.42□□□□□ -0.58
USP8-218ENST00000561330 EPAS1Q99814 870 aa11.42□□□□□ -0.58
USP8-218ENST00000561330 PCDHGA10Q9Y5H3 936 aa11.42□□□□□ -0.58
USP8-218ENST00000561330 PPP4R3BQ5MIZ7 849 aa11.41□□□□□ -0.58
USP8-218ENST00000561330 VARS2Q5ST30 1063 aaKnown RBP11.41□□□□□ -0.58
USP8-218ENST00000561330 TYW1BQ6NUM6 668 aa11.41□□□□□ -0.58
USP8-218ENST00000561330 FBXW7Q969H0 707 aa11.4□□□□□ -0.58
USP8-218ENST00000561330 OSBPP22059 807 aa11.39□□□□□ -0.59
USP8-218ENST00000561330 ZDHHC16Q969W1 377 aa11.39□□□□□ -0.59
USP8-218ENST00000561330 HS3ST6Q96QI5 342 aa11.36□□□□□ -0.59
USP8-218ENST00000561330 RBM33Q96EV2 1170 aaKnown RBP11.35□□□□□ -0.59
USP8-218ENST00000561330 ADAM33Q9BZ11 813 aa11.35□□□□□ -0.59
USP8-218ENST00000561330 MAP3K7O43318 606 aa11.34□□□□□ -0.59
USP8-218ENST00000561330 EN1Q05925 392 aaPredicted RBP11.34□□□□□ -0.59
USP8-218ENST00000561330 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.34□□□□□ -0.59
USP8-218ENST00000561330 POTEB3A0JP26 581 aa11.33□□□□□ -0.6
USP8-218ENST00000561330 PRIM1P49642 420 aaKnown RBP11.33□□□□□ -0.6
USP8-218ENST00000561330 POTEBQ6S5H4 581 aa11.33□□□□□ -0.6
USP8-218ENST00000561330 RBM26Q5T8P6 1007 aaKnown RBP11.32□□□□□ -0.6
USP8-218ENST00000561330 LMOD2Q6P5Q4 547 aa11.31□□□□□ -0.6
USP8-218ENST00000561330 ZNF687Q8N1G0 1237 aa11.31□□□□□ -0.6
USP8-218ENST00000561330 BCL2L12Q9HB09 334 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms