RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 NLRP6P59044 892 aa12.89□□□□□ -0.35
VPS13C-210ENST00000561258 FBXO22Q8NEZ5 403 aa12.89□□□□□ -0.35
VPS13C-210ENST00000561258 TAOK2Q9UL54 1235 aa12.89□□□□□ -0.35
VPS13C-210ENST00000561258 STK25O00506 426 aa12.87□□□□□ -0.35
VPS13C-210ENST00000561258 PKD2Q13563 968 aa12.86□□□□□ -0.35
VPS13C-210ENST00000561258 MFRPQ9BY79 579 aa12.86□□□□□ -0.35
VPS13C-210ENST00000561258 ERBB3P21860 1342 aa12.86□□□□□ -0.35
VPS13C-210ENST00000561258 RIMBP2O15034 1052 aa12.85□□□□□ -0.35
VPS13C-210ENST00000561258 RGL2O15211 777 aa12.84□□□□□ -0.35
VPS13C-210ENST00000561258 VARS2Q5ST30 1063 aaKnown RBP12.79□□□□□ -0.36
VPS13C-210ENST00000561258 GPR153Q6NV75 609 aa12.79□□□□□ -0.36
VPS13C-210ENST00000561258 ZSWIM6Q9HCJ5 1215 aa12.78□□□□□ -0.36
VPS13C-210ENST00000561258 ARSIQ5FYB1 569 aa12.74□□□□□ -0.37
VPS13C-210ENST00000561258 KHSRPQ92945 711 aaKnown RBP eCLIP12.72□□□□□ -0.37
VPS13C-210ENST00000561258 C2orf72A6NCS6 295 aa12.7□□□□□ -0.38
VPS13C-210ENST00000561258 KIF3CO14782 793 aa12.69□□□□□ -0.38
VPS13C-210ENST00000561258 ZNF687Q8N1G0 1237 aa12.67□□□□□ -0.38
VPS13C-210ENST00000561258 PPP1R37O75864 691 aa12.66□□□□□ -0.38
VPS13C-210ENST00000561258 ZNF316A6NFI3 1004 aaPredicted RBP12.62□□□□□ -0.39
VPS13C-210ENST00000561258 TMC2Q8TDI7 906 aa12.59□□□□□ -0.39
VPS13C-210ENST00000561258 NUDT7P0C024 238 aa12.58□□□□□ -0.4
VPS13C-210ENST00000561258 RNF166Q96A37 237 aaPredicted RBP12.55□□□□□ -0.4
VPS13C-210ENST00000561258 PCDHGA4Q9Y5G9 962 aa12.55□□□□□ -0.4
VPS13C-210ENST00000561258 SLC34A2O95436 690 aa12.53□□□□□ -0.4
VPS13C-210ENST00000561258 HS6ST3Q8IZP7 471 aa12.53□□□□□ -0.4
VPS13C-210ENST00000561258 MYT1LQ9UL68 1186 aa12.53□□□□□ -0.4
VPS13C-210ENST00000561258 ANKRD13DQ6ZTN6 518 aa12.52□□□□□ -0.41
VPS13C-210ENST00000561258 LHX6Q9UPM6 363 aa12.52□□□□□ -0.41
VPS13C-210ENST00000561258 CHGAP10645 457 aaKnown RBP12.48□□□□□ -0.41
VPS13C-210ENST00000561258 LSM11P83369 360 aaKnown RBP eCLIP12.47□□□□□ -0.41
VPS13C-210ENST00000561258 POTEEQ6S8J3 1075 aa12.46□□□□□ -0.41
VPS13C-210ENST00000561258 AXIN2Q9Y2T1 843 aa12.45□□□□□ -0.42
VPS13C-210ENST00000561258 RTN4Q9NQC3 1192 aaKnown RBP12.44□□□□□ -0.42
VPS13C-210ENST00000561258 FOXK1P85037 733 aa12.42□□□□□ -0.42
VPS13C-210ENST00000561258 NKX1-1Q15270 411 aaPredicted RBP12.42□□□□□ -0.42
VPS13C-210ENST00000561258 AMER1Q5JTC6 1135 aaPredicted RBP12.42□□□□□ -0.42
VPS13C-210ENST00000561258 PLPP6Q8IY26 295 aa12.42□□□□□ -0.42
VPS13C-210ENST00000561258 PTGER2P43116 358 aa12.41□□□□□ -0.42
VPS13C-210ENST00000561258 GPHNQ9NQX3 736 aaPredicted RBP12.4□□□□□ -0.42
VPS13C-210ENST00000561258 KDM4FA0A1W2PPD8 638 aa12.39□□□□□ -0.43
VPS13C-210ENST00000561258 PBX2P40425 430 aa12.39□□□□□ -0.43
VPS13C-210ENST00000561258 DSG2Q14126 1118 aa12.39□□□□□ -0.43
VPS13C-210ENST00000561258 PTCD2Q8WV60 388 aaKnown RBP12.39□□□□□ -0.43
VPS13C-210ENST00000561258 DNAJC5Q9H3Z4 198 aa12.34□□□□□ -0.43
VPS13C-210ENST00000561258 SLC24A1O60721 1099 aa12.33□□□□□ -0.44
VPS13C-210ENST00000561258 ARHGAP33O14559 1287 aa12.31□□□□□ -0.44
VPS13C-210ENST00000561258 PSDA5PKW4 1024 aaPredicted RBP12.3□□□□□ -0.44
VPS13C-210ENST00000561258 PSEN2P49810 448 aa12.28□□□□□ -0.44
VPS13C-210ENST00000561258 TBC1D12O60347 775 aa12.27□□□□□ -0.45
VPS13C-210ENST00000561258 DMRTA1Q5VZB9 504 aa12.27□□□□□ -0.45
VPS13C-210ENST00000561258 ADGRD1Q6QNK2 874 aa12.27□□□□□ -0.45
VPS13C-210ENST00000561258 UPF1Q92900 1129 aaKnown RBP eCLIP12.26□□□□□ -0.45
VPS13C-210ENST00000561258 CRISPLD2Q9H0B8 497 aa12.26□□□□□ -0.45
VPS13C-210ENST00000561258 RYDENQ9NUL5 291 aaKnown RBP12.25□□□□□ -0.45
VPS13C-210ENST00000561258 PPP4R3BQ5MIZ7 849 aa12.24□□□□□ -0.45
VPS13C-210ENST00000561258 OXER1Q8TDS5 423 aa12.24□□□□□ -0.45
VPS13C-210ENST00000561258 NCKAP5LQ9HCH0 1330 aa12.21□□□□□ -0.45
VPS13C-210ENST00000561258 PPP1R15BQ5SWA1 713 aa12.21□□□□□ -0.45
VPS13C-210ENST00000561258 GTPBP6O43824 516 aaPredicted RBP12.2□□□□□ -0.46
VPS13C-210ENST00000561258 TK2O00142 265 aa12.19□□□□□ -0.46
VPS13C-210ENST00000561258 HRO43593 1189 aa12.18□□□□□ -0.46
VPS13C-210ENST00000561258 KCNK17Q96T54 332 aa12.18□□□□□ -0.46
VPS13C-210ENST00000561258 PDE4AP27815 886 aa12.16□□□□□ -0.46
VPS13C-210ENST00000561258 DCAF8L2P0C7V8 631 aa12.15□□□□□ -0.46
VPS13C-210ENST00000561258 ZNF454Q8N9F8 522 aa12.15□□□□□ -0.46
VPS13C-210ENST00000561258 HCSTQ9UBK5 93 aa12.14□□□□□ -0.47
VPS13C-210ENST00000561258 LARP6Q9BRS8 491 aaKnown RBP12.13□□□□□ -0.47
VPS13C-210ENST00000561258 KCTD12Q96CX2 325 aaKnown RBP12.1□□□□□ -0.47
VPS13C-210ENST00000561258 KCNH8Q96L42 1107 aa12.1□□□□□ -0.47
VPS13C-210ENST00000561258 FOSBP53539 338 aa12.09□□□□□ -0.47
VPS13C-210ENST00000561258 PLA2G2EQ9NZK7 142 aa12.09□□□□□ -0.47
VPS13C-210ENST00000561258 VPS9D1Q9Y2B5 631 aa12.09□□□□□ -0.47
VPS13C-210ENST00000561258 DDX27Q96GQ7 796 aaKnown RBP12.08□□□□□ -0.48
VPS13C-210ENST00000561258 STAC3Q96MF2 364 aa12.08□□□□□ -0.48
VPS13C-210ENST00000561258 BCL2L12Q9HB09 334 aa12.08□□□□□ -0.48
VPS13C-210ENST00000561258 EVI5O60447 810 aa12.07□□□□□ -0.48
VPS13C-210ENST00000561258 ANO8Q9HCE9 1232 aaPredicted RBP12.07□□□□□ -0.48
VPS13C-210ENST00000561258 MFSD10Q14728 455 aa12.04□□□□□ -0.48
VPS13C-210ENST00000561258 CADPS2Q86UW7 1296 aa12.04□□□□□ -0.48
VPS13C-210ENST00000561258 EMILIN3Q9NT22 766 aa12.03□□□□□ -0.48
VPS13C-210ENST00000561258 PTPREP23469 700 aa12.02□□□□□ -0.49
VPS13C-210ENST00000561258 MAP3K9P80192 1104 aa12.02□□□□□ -0.49
VPS13C-210ENST00000561258 JPH4Q96JJ6 628 aa12.02□□□□□ -0.49
VPS13C-210ENST00000561258 ADAM33Q9BZ11 813 aa12.01□□□□□ -0.49
VPS13C-210ENST00000561258 ZDHHC16Q969W1 377 aa12□□□□□ -0.49
VPS13C-210ENST00000561258 SLC4A5Q9BY07 1137 aa12□□□□□ -0.49
VPS13C-210ENST00000561258 ZBED2Q9BTP6 218 aa11.99□□□□□ -0.49
VPS13C-210ENST00000561258 BHMG1C9JSJ3 638 aaPredicted RBP11.97□□□□□ -0.49
VPS13C-210ENST00000561258 PTPN5P54829 565 aa11.97□□□□□ -0.49
VPS13C-210ENST00000561258 PCDHGA10Q9Y5H3 936 aa11.94□□□□□ -0.5
VPS13C-210ENST00000561258 GOLGA8CPA6NN73 597 aa11.9□□□□□ -0.5
VPS13C-210ENST00000561258 THSD4Q6ZMP0 1018 aa11.9□□□□□ -0.5
VPS13C-210ENST00000561258 MRPL50Q8N5N7 158 aaKnown RBP11.9□□□□□ -0.5
VPS13C-210ENST00000561258 WNT2BQ93097 391 aa11.89□□□□□ -0.51
VPS13C-210ENST00000561258 COL9A1P20849 921 aa11.87□□□□□ -0.51
VPS13C-210ENST00000561258 PROX2Q3B8N5 592 aa11.87□□□□□ -0.51
VPS13C-210ENST00000561258 PPP1R3GB7ZBB8 358 aa11.86□□□□□ -0.51
VPS13C-210ENST00000561258 PHF14O94880 888 aa11.85□□□□□ -0.51
VPS13C-210ENST00000561258 CAMK2BQ13554 666 aa11.85□□□□□ -0.51
VPS13C-210ENST00000561258 TYW1BQ6NUM6 668 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms