RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 PREX2Q70Z35 1606 aa17.82■□□□□ 0.44
TPM1-227ENST00000560970 CDC42BPBQ9Y5S2 1711 aa17.81■□□□□ 0.44
TPM1-227ENST00000560970 YEATS2Q9ULM3 1422 aa17.8■□□□□ 0.44
TPM1-227ENST00000560970 KDM5CP41229 1560 aa17.79■□□□□ 0.44
TPM1-227ENST00000560970 PREX1Q8TCU6 1659 aa17.79■□□□□ 0.44
TPM1-227ENST00000560970 PLCH2O75038 1416 aa17.79■□□□□ 0.44
TPM1-227ENST00000560970 ITSN2Q9NZM3 1697 aa17.77■□□□□ 0.44
TPM1-227ENST00000560970 ARID4BQ4LE39 1312 aaPredicted RBP17.77■□□□□ 0.44
TPM1-227ENST00000560970 ARHGAP5Q13017 1502 aa17.77■□□□□ 0.43
TPM1-227ENST00000560970 CDC42BPAQ5VT25 1732 aa17.75■□□□□ 0.43
TPM1-227ENST00000560970 ARHGEF12Q9NZN5 1544 aa17.75■□□□□ 0.43
TPM1-227ENST00000560970 CLIP1P30622 1438 aa17.74■□□□□ 0.43
TPM1-227ENST00000560970 TROQ12816 1431 aaPredicted RBP17.74■□□□□ 0.43
TPM1-227ENST00000560970 C9orf84Q5VXU9 1444 aa17.74■□□□□ 0.43
TPM1-227ENST00000560970 ABCA6Q8N139 1617 aa17.74■□□□□ 0.43
TPM1-227ENST00000560970 ZNF518AQ6AHZ1 1483 aa17.74■□□□□ 0.43
TPM1-227ENST00000560970 REREQ9P2R6 1566 aa17.74■□□□□ 0.43
TPM1-227ENST00000560970 SCAPERQ9BY12 1400 aa17.73■□□□□ 0.43
TPM1-227ENST00000560970 CCDC18Q5T9S5 1454 aa17.73■□□□□ 0.43
TPM1-227ENST00000560970 DIP2CQ9Y2E4 1556 aa17.73■□□□□ 0.43
TPM1-227ENST00000560970 ABCC1P33527 1531 aa17.72■□□□□ 0.43
TPM1-227ENST00000560970 UBTFP17480 764 aaKnown RBP17.7■□□□□ 0.42
TPM1-227ENST00000560970 ATP10AO60312 1499 aa17.69■□□□□ 0.42
TPM1-227ENST00000560970 FYCO1Q9BQS8 1478 aa17.67■□□□□ 0.42
TPM1-227ENST00000560970 C3P01024 1663 aa17.66■□□□□ 0.42
TPM1-227ENST00000560970 CDK11AQ9UQ88 783 aaPredicted RBP17.65■□□□□ 0.42
TPM1-227ENST00000560970 CASKIN1Q8WXD9 1431 aa17.64■□□□□ 0.42
TPM1-227ENST00000560970 KIDINS220Q9ULH0 1771 aa17.64■□□□□ 0.41
TPM1-227ENST00000560970 EHMT2Q96KQ7 1210 aa17.64■□□□□ 0.41
TPM1-227ENST00000560970 ATP1B4Q9UN42 357 aaPredicted RBP17.63■□□□□ 0.41
TPM1-227ENST00000560970 EFCAB2Q5VUJ9 269 aa17.62■□□□□ 0.41
TPM1-227ENST00000560970 MLH3Q9UHC1 1453 aa17.6■□□□□ 0.41
TPM1-227ENST00000560970 SAMD9LQ8IVG5 1584 aa17.6■□□□□ 0.41
TPM1-227ENST00000560970 MROH2AA6NES4 1674 aa17.6■□□□□ 0.41
TPM1-227ENST00000560970 STRCQ7RTU9 1775 aa17.59■□□□□ 0.41
TPM1-227ENST00000560970 AGLP35573 1532 aa17.59■□□□□ 0.41
TPM1-227ENST00000560970 FBXO41Q8TF61 875 aa17.59■□□□□ 0.41
TPM1-227ENST00000560970 INO80Q9ULG1 1556 aaPredicted RBP17.57■□□□□ 0.4
TPM1-227ENST00000560970 SYCP2Q9BX26 1530 aa17.57■□□□□ 0.4
TPM1-227ENST00000560970 MLECQ14165 292 aa17.56■□□□□ 0.4
TPM1-227ENST00000560970 SETD1BQ9UPS6 1966 aaKnown RBP17.56■□□□□ 0.4
TPM1-227ENST00000560970 PLPPR3Q6T4P5 718 aa17.54■□□□□ 0.4
TPM1-227ENST00000560970 SUPT6HQ7KZ85 1726 aaKnown RBP17.54■□□□□ 0.4
TPM1-227ENST00000560970 HSPA2P54652 639 aa17.53■□□□□ 0.4
TPM1-227ENST00000560970 TRAPPC8Q9Y2L5 1435 aa17.53■□□□□ 0.4
TPM1-227ENST00000560970 UHRF1BP1Q6BDS2 1440 aa17.52■□□□□ 0.4
TPM1-227ENST00000560970 PLXNC1O60486 1568 aa17.52■□□□□ 0.39
TPM1-227ENST00000560970 ADGBQ8N7X0 1667 aa17.52■□□□□ 0.39
TPM1-227ENST00000560970 ATP7AQ04656 1500 aa17.51■□□□□ 0.39
TPM1-227ENST00000560970 ZNF142P52746 1687 aaPredicted RBP17.5■□□□□ 0.39
TPM1-227ENST00000560970 CLTCQ00610 1675 aaKnown RBP17.49■□□□□ 0.39
TPM1-227ENST00000560970 EHBP1L1Q8N3D4 1523 aa17.48■□□□□ 0.39
TPM1-227ENST00000560970 AFAP1Q8N556 730 aa17.48■□□□□ 0.39
TPM1-227ENST00000560970 TIAM1Q13009 1591 aa17.48■□□□□ 0.39
TPM1-227ENST00000560970 MYO3AQ8NEV4 1616 aa17.47■□□□□ 0.39
TPM1-227ENST00000560970 GPATCH8Q9UKJ3 1502 aaKnown RBP17.46■□□□□ 0.39
TPM1-227ENST00000560970 CNTLNQ9NXG0 1405 aa17.46■□□□□ 0.39
TPM1-227ENST00000560970 PLEKHH2Q8IVE3 1493 aa17.45■□□□□ 0.38
TPM1-227ENST00000560970 MYT1LQ9UL68 1186 aa17.45■□□□□ 0.38
TPM1-227ENST00000560970 CEBPAP49715 358 aaPredicted RBP17.4■□□□□ 0.38
TPM1-227ENST00000560970 KIAA1107Q9UPP5 1409 aa17.39■□□□□ 0.38
TPM1-227ENST00000560970 NPATQ14207 1427 aa17.38■□□□□ 0.37
TPM1-227ENST00000560970 A2MP01023 1474 aa17.37■□□□□ 0.37
TPM1-227ENST00000560970 CEP170BQ9Y4F5 1589 aaPredicted RBP17.36■□□□□ 0.37
TPM1-227ENST00000560970 CAMSAP1Q5T5Y3 1602 aa17.36■□□□□ 0.37
TPM1-227ENST00000560970 CERKQ8TCT0 537 aa17.36■□□□□ 0.37
TPM1-227ENST00000560970 MTUS2Q5JR59 1369 aa17.36■□□□□ 0.37
TPM1-227ENST00000560970 PTPRTO14522 1441 aa17.36■□□□□ 0.37
TPM1-227ENST00000560970 NCOA1Q15788 1441 aa17.36■□□□□ 0.37
TPM1-227ENST00000560970 POLR1AO95602 1720 aaPredicted RBP17.35■□□□□ 0.37
TPM1-227ENST00000560970 ESF1Q9H501 851 aaKnown RBP17.35■□□□□ 0.37
TPM1-227ENST00000560970 CCNB3Q8WWL7 1395 aa17.35■□□□□ 0.37
TPM1-227ENST00000560970 SPAG9O60271 1321 aaKnown RBP17.33■□□□□ 0.36
TPM1-227ENST00000560970 LTBP4Q8N2S1 1624 aa17.32■□□□□ 0.36
TPM1-227ENST00000560970 ZNF777Q9ULD5 760 aaPredicted RBP17.32■□□□□ 0.36
TPM1-227ENST00000560970 FAM135AQ9P2D6 1515 aa17.31■□□□□ 0.36
TPM1-227ENST00000560970 IQSEC2Q5JU85 1478 aa17.31■□□□□ 0.36
TPM1-227ENST00000560970 CEP162Q5TB80 1403 aa17.31■□□□□ 0.36
TPM1-227ENST00000560970 DMRT2Q9Y5R5 561 aa17.31■□□□□ 0.36
TPM1-227ENST00000560970 PLA2R1Q13018 1463 aa17.29■□□□□ 0.36
TPM1-227ENST00000560970 CFDP1Q9UEE9 299 aaPredicted RBP17.28■□□□□ 0.36
TPM1-227ENST00000560970 CAMSAP2Q08AD1 1489 aa17.28■□□□□ 0.36
TPM1-227ENST00000560970 MBD5Q9P267 1494 aa17.28■□□□□ 0.36
TPM1-227ENST00000560970 ARHGEF5Q12774 1597 aa17.28■□□□□ 0.36
TPM1-227ENST00000560970 KDM5DQ9BY66 1539 aa17.27■□□□□ 0.36
TPM1-227ENST00000560970 CCDC141Q6ZP82 1450 aa17.27■□□□□ 0.36
TPM1-227ENST00000560970 ZC3H13Q5T200 1668 aaKnown RBP17.26■□□□□ 0.35
TPM1-227ENST00000560970 HNRNPMP52272 730 aaKnown RBP eCLIP17.26■□□□□ 0.35
TPM1-227ENST00000560970 SPATA31D1Q6ZQQ2 1576 aa17.26■□□□□ 0.35
TPM1-227ENST00000560970 NCOA2Q15596 1464 aa17.25■□□□□ 0.35
TPM1-227ENST00000560970 RTEL1-TNFRSF6BF6WH68 1400 aa17.25■□□□□ 0.35
TPM1-227ENST00000560970 PTPRKQ15262 1439 aa17.25■□□□□ 0.35
TPM1-227ENST00000560970 LOC105371045A0A1W2PR82 267 aa17.25■□□□□ 0.35
TPM1-227ENST00000560970 ZMYM3Q14202 1370 aa17.25■□□□□ 0.35
TPM1-227ENST00000560970 DNMT1P26358 1616 aaKnown RBP17.25■□□□□ 0.35
TPM1-227ENST00000560970 RNF17Q9BXT8 1623 aaKnown RBP17.24■□□□□ 0.35
TPM1-227ENST00000560970 TCOF1Q13428 1488 aaKnown RBP17.24■□□□□ 0.35
TPM1-227ENST00000560970 EIF2AK4Q9P2K8 1649 aaKnown RBP17.22■□□□□ 0.35
TPM1-227ENST00000560970 CROCC2H7BZ55 1655 aa17.21■□□□□ 0.35
TPM1-227ENST00000560970 MAST1Q9Y2H9 1570 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms