RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 ATP10AO60312 1499 aa31■■■□□ 2.55
TPM1-226ENST00000560959 EFCAB2Q5VUJ9 269 aa30.99■■■□□ 2.55
TPM1-226ENST00000560959 SIGLEC1Q9BZZ2 1709 aa30.98■■■□□ 2.55
TPM1-226ENST00000560959 CDK13Q14004 1512 aaKnown RBP30.98■■■□□ 2.55
TPM1-226ENST00000560959 CDK11AQ9UQ88 783 aaPredicted RBP30.96■■■□□ 2.55
TPM1-226ENST00000560959 C9orf84Q5VXU9 1444 aa30.94■■■□□ 2.54
TPM1-226ENST00000560959 ARHGEF12Q9NZN5 1544 aa30.93■■■□□ 2.54
TPM1-226ENST00000560959 FMN1Q68DA7 1419 aa30.92■■■□□ 2.54
TPM1-226ENST00000560959 FER1L4A9Z1Z3 1794 aa30.9■■■□□ 2.54
TPM1-226ENST00000560959 DMRT2Q9Y5R5 561 aa30.87■■■□□ 2.53
TPM1-226ENST00000560959 ZNF518AQ6AHZ1 1483 aa30.85■■■□□ 2.53
TPM1-226ENST00000560959 ATP1B4Q9UN42 357 aaPredicted RBP30.85■■■□□ 2.53
TPM1-226ENST00000560959 UBTFP17480 764 aaKnown RBP30.81■■■□□ 2.52
TPM1-226ENST00000560959 CEBPAP49715 358 aaPredicted RBP30.81■■■□□ 2.52
TPM1-226ENST00000560959 AFAP1Q8N556 730 aa30.8■■■□□ 2.52
TPM1-226ENST00000560959 MYO5CQ9NQX4 1742 aa30.8■■■□□ 2.52
TPM1-226ENST00000560959 PREX1Q8TCU6 1659 aa30.79■■■□□ 2.52
TPM1-226ENST00000560959 TROQ12816 1431 aaPredicted RBP30.79■■■□□ 2.52
TPM1-226ENST00000560959 ARHGAP35Q9NRY4 1499 aa30.76■■■□□ 2.52
TPM1-226ENST00000560959 KDM5CP41229 1560 aa30.76■■■□□ 2.52
TPM1-226ENST00000560959 CLIP1P30622 1438 aa30.74■■■□□ 2.51
TPM1-226ENST00000560959 KIF14Q15058 1648 aa30.74■■■□□ 2.51
TPM1-226ENST00000560959 UHRF1BP1Q6BDS2 1440 aa30.73■■■□□ 2.51
TPM1-226ENST00000560959 ARHGAP5Q13017 1502 aa30.73■■■□□ 2.51
TPM1-226ENST00000560959 SETD1BQ9UPS6 1966 aaKnown RBP30.72■■■□□ 2.51
TPM1-226ENST00000560959 REREQ9P2R6 1566 aa30.71■■■□□ 2.51
TPM1-226ENST00000560959 MLH3Q9UHC1 1453 aa30.7■■■□□ 2.51
TPM1-226ENST00000560959 MYT1LQ9UL68 1186 aa30.69■■■□□ 2.5
TPM1-226ENST00000560959 STRCQ7RTU9 1775 aa30.66■■■□□ 2.5
TPM1-226ENST00000560959 DIP2CQ9Y2E4 1556 aa30.65■■■□□ 2.5
TPM1-226ENST00000560959 PTPRTO14522 1441 aa30.64■■■□□ 2.49
TPM1-226ENST00000560959 AGLP35573 1532 aa30.63■■■□□ 2.49
TPM1-226ENST00000560959 ESF1Q9H501 851 aaKnown RBP30.62■■■□□ 2.49
TPM1-226ENST00000560959 EHMT2Q96KQ7 1210 aa30.61■■■□□ 2.49
TPM1-226ENST00000560959 TRAPPC8Q9Y2L5 1435 aa30.59■■■□□ 2.49
TPM1-226ENST00000560959 CDC42BPBQ9Y5S2 1711 aa30.56■■■□□ 2.48
TPM1-226ENST00000560959 CNTLNQ9NXG0 1405 aa30.55■■■□□ 2.48
TPM1-226ENST00000560959 ABCA6Q8N139 1617 aa30.55■■■□□ 2.48
TPM1-226ENST00000560959 DISP3Q9P2K9 1392 aa30.54■■■□□ 2.48
TPM1-226ENST00000560959 ABCC1P33527 1531 aa30.53■■■□□ 2.48
TPM1-226ENST00000560959 CCDC18Q5T9S5 1454 aa30.52■■■□□ 2.48
TPM1-226ENST00000560959 C3P01024 1663 aa30.52■■■□□ 2.48
TPM1-226ENST00000560959 CASKIN1Q8WXD9 1431 aa30.51■■■□□ 2.47
TPM1-226ENST00000560959 PREX2Q70Z35 1606 aa30.5■■■□□ 2.47
TPM1-226ENST00000560959 LRRIQ1Q96JM4 1722 aa30.49■■■□□ 2.47
TPM1-226ENST00000560959 ILDR2Q71H61 639 aa30.47■■■□□ 2.47
TPM1-226ENST00000560959 IQSEC2Q5JU85 1478 aa30.46■■■□□ 2.47
TPM1-226ENST00000560959 SOCS7O14512 581 aa30.46■■■□□ 2.47
TPM1-226ENST00000560959 NPATQ14207 1427 aa30.45■■■□□ 2.46
TPM1-226ENST00000560959 NCOA1Q15788 1441 aa30.45■■■□□ 2.46
TPM1-226ENST00000560959 LTBP4Q8N2S1 1624 aa30.44■■■□□ 2.46
TPM1-226ENST00000560959 KIDINS220Q9ULH0 1771 aa30.43■■■□□ 2.46
TPM1-226ENST00000560959 ITSN2Q9NZM3 1697 aa30.43■■■□□ 2.46
TPM1-226ENST00000560959 CHIC1Q5VXU3 224 aa30.42■■■□□ 2.46
TPM1-226ENST00000560959 ZMYM3Q14202 1370 aa30.39■■■□□ 2.45
TPM1-226ENST00000560959 SPAG9O60271 1321 aaKnown RBP30.36■■■□□ 2.45
TPM1-226ENST00000560959 SAMD9LQ8IVG5 1584 aa30.36■■■□□ 2.45
TPM1-226ENST00000560959 CDC42BPAQ5VT25 1732 aa30.34■■■□□ 2.45
TPM1-226ENST00000560959 ZNF777Q9ULD5 760 aaPredicted RBP30.34■■■□□ 2.45
TPM1-226ENST00000560959 MROH2AA6NES4 1674 aa30.33■■■□□ 2.45
TPM1-226ENST00000560959 FYCO1Q9BQS8 1478 aa30.32■■■□□ 2.44
TPM1-226ENST00000560959 KIAA1107Q9UPP5 1409 aa30.32■■■□□ 2.44
TPM1-226ENST00000560959 GPATCH8Q9UKJ3 1502 aaKnown RBP30.32■■■□□ 2.44
TPM1-226ENST00000560959 CAMSAP1Q5T5Y3 1602 aa30.3■■■□□ 2.44
TPM1-226ENST00000560959 HNRNPMP52272 730 aaKnown RBP eCLIP30.3■■■□□ 2.44
TPM1-226ENST00000560959 PKD2Q13563 968 aa30.29■■■□□ 2.44
TPM1-226ENST00000560959 PPP6R1Q9UPN7 881 aa30.29■■■□□ 2.44
TPM1-226ENST00000560959 PLEKHH2Q8IVE3 1493 aa30.27■■■□□ 2.44
TPM1-226ENST00000560959 SYCP2Q9BX26 1530 aa30.26■■■□□ 2.43
TPM1-226ENST00000560959 CFDP1Q9UEE9 299 aaPredicted RBP30.25■■■□□ 2.43
TPM1-226ENST00000560959 PLA2R1Q13018 1463 aa30.25■■■□□ 2.43
TPM1-226ENST00000560959 NCKAP5LQ9HCH0 1330 aa30.24■■■□□ 2.43
TPM1-226ENST00000560959 SPATA31D1Q6ZQQ2 1576 aa30.24■■■□□ 2.43
TPM1-226ENST00000560959 A2MP01023 1474 aa30.22■■■□□ 2.43
TPM1-226ENST00000560959 ATP7AQ04656 1500 aa30.22■■■□□ 2.43
TPM1-226ENST00000560959 PTPRKQ15262 1439 aa30.21■■■□□ 2.43
TPM1-226ENST00000560959 PLXNC1O60486 1568 aa30.2■■■□□ 2.43
TPM1-226ENST00000560959 ZNF335Q9H4Z2 1342 aaPredicted RBP30.19■■■□□ 2.42
TPM1-226ENST00000560959 CCNB3Q8WWL7 1395 aa30.18■■■□□ 2.42
TPM1-226ENST00000560959 SUPT6HQ7KZ85 1726 aaKnown RBP30.17■■■□□ 2.42
TPM1-226ENST00000560959 GGT6Q6P531 493 aa30.17■■■□□ 2.42
TPM1-226ENST00000560959 TCOF1Q13428 1488 aaKnown RBP30.17■■■□□ 2.42
TPM1-226ENST00000560959 INO80Q9ULG1 1556 aaPredicted RBP30.15■■■□□ 2.42
TPM1-226ENST00000560959 UBAP1LF5GYI3 381 aa30.15■■■□□ 2.42
TPM1-226ENST00000560959 ZNF142P52746 1687 aaPredicted RBP30.14■■■□□ 2.41
TPM1-226ENST00000560959 CLTCQ00610 1675 aaKnown RBP30.13■■■□□ 2.41
TPM1-226ENST00000560959 CEP170BQ9Y4F5 1589 aaPredicted RBP30.11■■■□□ 2.41
TPM1-226ENST00000560959 MYO3AQ8NEV4 1616 aa30.11■■■□□ 2.41
TPM1-226ENST00000560959 MTUS2Q5JR59 1369 aa30.08■■■□□ 2.41
TPM1-226ENST00000560959 RTEL1-TNFRSF6BF6WH68 1400 aa30.07■■■□□ 2.4
TPM1-226ENST00000560959 A2ML1A8K2U0 1454 aa30.05■■■□□ 2.4
TPM1-226ENST00000560959 MBD5Q9P267 1494 aa30.04■■■□□ 2.4
TPM1-226ENST00000560959 DHX29Q7Z478 1369 aaKnown RBP30.03■■■□□ 2.4
TPM1-226ENST00000560959 ADGBQ8N7X0 1667 aa30.03■■■□□ 2.4
TPM1-226ENST00000560959 ZNF644Q9H582 1327 aaPredicted RBP30.01■■■□□ 2.4
TPM1-226ENST00000560959 DNMT1P26358 1616 aaKnown RBP29.97■■■□□ 2.39
TPM1-226ENST00000560959 RSPH4AQ5TD94 716 aa29.96■■■□□ 2.39
TPM1-226ENST00000560959 TNRQ92752 1358 aa29.93■■■□□ 2.38
TPM1-226ENST00000560959 FAM135AQ9P2D6 1515 aa29.93■■■□□ 2.38
TPM1-226ENST00000560959 TOM1O60784 492 aa29.93■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms